Hi Gabriel

you should only need to specify -clean if you have done editing or manual intervention and you want to overwrite what you have done. Otherwise edits and such will be detected and preserved.

cheers Bruce

On Mon, 25 Mar 2013, obregon@nmr.mgh.harvard.edu wrote:

Hi,

I was wondering if the -clean-* flags should only be used when you've performed manual edits on your volumes, or if they are also necessary when you re-process your subjects?

For instance, let's say I edit the Talairach transform and run the entire recon-all process (using the -all flag) on a subject I had previously processed using the previous release of Freesurfer. If I had done no other manual edits on volumes such as brainmask.mgz, wm.mgz, etc., will these volumes be automatically overwritten when I run the latest version of recon-all, or do I need to specify the corresponding -clean-* flags in order for this to take place?

Thanks,

Gabriel _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer