Hi,
Following previous discussions on the mailing list, I am using mri_surfcluster to extract MNI (or Talairach) coordinates of a label using:
mri_surfcluster --in $SUBJECTS_DIR/fsaverage/surf/lh.area --clabel lh.G_cingulate-Isthmus.label --sum ~/Desktop/pract3 --centroid --thmin 0 --hemi lh --subject fsaverage --nofixmni I tried different labels, but for all of them I get the following coordinates (for left hemisphere): -29.4 -22.0 17.4
I see that others are having the same problem, like the one in the following link: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2015-November/042446....
Am I missing something here? What can I do to solve this problem?
Bests, Ladan
It turns out that setting --min to 0 causes a problem. Try setting it to something close to 0, eg 1e-6
On 03/09/2017 03:10 AM, Ladan Shahshahani wrote:
Hi,
Following previous discussions on the mailing list, I am using mri_surfcluster to extract MNI (or Talairach) coordinates of a label using:
mri_surfcluster --in $SUBJECTS_DIR/fsaverage/surf/lh.area --clabel lh.G_cingulate-Isthmus.label --sum ~/Desktop/pract3 --centroid --thmin 0 --hemi lh --subject fsaverage --nofixmni I tried different labels, but for all of them I get the following coordinates (for left hemisphere): -29.4 -22.0 17.4
I see that others are having the same problem, like the one in the following link: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2015-November/042446....
Am I missing something here? What can I do to solve this problem?
Bests, Ladan
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Douglas N Greve -
Ladan Shahshahani