It's having a problem with something in the header of the file. Try using mri_convert directly and specify that this is a GE dicom (see mri_convert -help).

doug

Joakim Vinberg wrote:

Hi everybody,

I have several older anatomical series that I would like to run through recon-all. Unfortunately, the DCM files were pulled down with an older filename convention that seems to trip mri_convert immediately, and I’m having some trouble interpreting the error. Can anybody shed any light on this one?

The filenames were pulled down from the scanner in the E8846S5I%d.MR format are still in this format, so I’m not immediately sure what’s going on.

Thanks in advance for all of the help!

Joakim

/Volumes/192.168.1.10/projects/freesurfer/0029

\n mri_convert /Volumes/192.168.1.10/projects/freesurfer/0029/dcm/E8846S5I1.MR /Volumes/192.168.1.10/projects/freesurfer/0029/mri/orig/001.mgz \n

mri_convert /Volumes/192.168.1.10/projects/freesurfer/0029/dcm/E8846S5I1.MR /Volumes/192.168.1.10/projects/freesurfer/0029/mri/orig/001.mgz

$Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $

reading from /Volumes/192.168.1.10/projects/freesurfer/0029/dcm/E8846S5I1.MR...

MRIalloc(1229409857, 0, 124): bad parm

fname_format : /Volumes/192.168.1.10/projects/freesurfer/0029/dcm/E8846S5I%d.MR

fname_format2 : /Volumes/192.168.1.10/projects/freesurfer/0029/dcm/E8846S5I%03d.MR

multi-echo genesis file detected (26981 echoes)...

No such file or directory

Darwin sam 10.5.0 Darwin Kernel Version 10.5.0: Fri Nov 5 23:19:13 PDT 2010; root:xnu-1504.9.17~1/RELEASE_X86_64 x86_64

recon-all -s 0029 exited with ERRORS at Fri Feb 11 12:06:11 PST 2011

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