Hi Xiangchuan

Avi Snyder's new talairach doesn't seem to fail anymore, and the skullstrip failures are now extremely rate, so you might just let the whole thing chug through and only check it at the end to make sure the surfaces are accurate.

cheers, Bruce

On Mon, 17 Sep 2007, Xiangchuan Chen wrote:

Hi all,

I am working on 80 subjects' data with the following work flow:

1. -autorecon1
2. edit talairach registration
3. -autorecon1
4. -autorecon2
5. edit brainmask.mgz
6. edit wm.mgz
7. -autorecon2-wm
8. -autorecon3

I have already finished this work flow for 30 subjects with FreeSurfer v3.05. I have spent a lot of time on steps 2, 5 and 6. I am not worrying about the other steps because they are my computer's tasks, but not mine. So, if I re-run the same work flow with v4, do I have to go through all these steps?

Any suggestions are greatly appreciated.

Thanks in advance,

Xiangchuan Chen

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