Recon-All Talairach error - Freesurfer

17 Mar 2010


      Hello,
I am working on unpacking a subject scanned in Bay 8 on Thursday, 3/11/2010.
I entered recon-all -autorecon-all -s FB0011090A
and after unpacking for approximately 45 minutes, it reported:
Wed Mar 17 12:52:07 EDT 2010
talairach_avi done
#--------------------------------------------
#@# Talairach Failure Detection Wed Mar 17 12:52:07 EDT 2010
/autofs/space/seymour_001/users/folate_subjects/FB0011090A/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm
***FAILED*** (p=0.0176, pval=0.0000 < threshold=0.0050)
Linux seymour 2.6.18-128.7.1.el5 #1 SMP Mon Aug 24 08:20:55 EDT 2009 i686
i686 i386 GNU/Linux
recon-all exited with ERRORS at Wed Mar 17 12:52:07 EDT 2010
Should I run without a talairach check if I manually look and it looks ok?
Let me know, and thanks,
Dave Brohawn
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4-stable-v4.5.0-20100311
RedHat release: CentOS release 5.3 (Final)
Kernel info: Linux 2.6.18-128.7.1.el5 i686
NMR Center info (/space/freesurfer exists):
machine: seymour
SUBJECTS_DIR: /space/seymour/1/users/folate_subjects/
PWD: /space/seymour/1/users/folate_subjects
ssh seymour
  setenv SUBJECTS_DIR /space/seymour/1/users/folate_subjects/
  cd /space/seymour/1/users/folate_subjects