Dear FreeSurfers,
It is our pleasure to welcome you the FreeSurfer course organized in Tours, Loire Valley, France, 2016 26-27th may.
This event is coorganized by the brain and imaging laboratory, INSERM U930-Université François Rabelais of Tours (France) and by the Martinos Center for Biomedical Imaging in Charlestown, MA (USA) which develops and distributes FreeSurfer. http://freesurfer.net/ This course will be limited to 64 participants. It will focus on surface-based analysis of individual and group morphological data and on tractographic analysis using FreeSurfer tools.
This course will be organized in the Ecole Polytechnique de l'Université de Tours
For online registration, please visit : http://freesurfer2016.sciencesconf.org/?lang=en
See you in Tours next May C Destrieux, F Andersson, L Barantin, S Love, M Sta, C Tauber
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Dear all,
I am wondering about the template that I should use for use to convert custom made labels to volumes. I have used the template.nii.gz file that gets generated in the fMRI analysis folder corresponding to the same subject along with the register.dat file located in the same location. However, when I viewed the resulting volume and label in freeview they don’t seem to overlap correctly.
Did anyone have success in converting custom labels to volumes?
Thank you,
how were the labels made? On Fri, 5 Feb 2016, m.abouelyazid@gmail.com wrote:
Dear all,
I am wondering about the template that I should use for use to convert custom made labels to volumes. I have used the template.nii.gz file that gets generated in the fMRI analysis folder corresponding to the same subject along with the register.dat file located in the same location.
However, when I viewed the resulting volume and label in freeview they don’t seem to overlap correctly.
Did anyone have success in converting custom labels to volumes?
Thank you,
I used tksurfer… I found the error actually it was due to the order by which I load the data into freeview. It has to be loading the ROI first and then loading the volume along with the associated registry. When this order is violated all sorts of problems happen.
On the other hand, I am unable to change the values in the textbox for "configure phase encoded data display" window in tksurfer. The keyboard just won’t type anything. Is there a way around that? I cannot use freeview for labelling coz I do it on flattened patches that don’t open there.
Thank you,
Sent from Mail for Windows 10
From: Bruce Fischl Sent: Friday, February 5, 2016 10:55 AM To: Freesurfer support list Subject: Re: [Freesurfer] Template for mri_label2vol
how were the labels made? On Fri, 5 Feb 2016, m.abouelyazid@gmail.com wrote:
Dear all,
I am wondering about the template that I should use for use to convert custom made labels to volumes. I have used the template.nii.gz file that gets generated in the fMRI analysis folder corresponding to the same subject along with the register.dat file located in the same location.
However, when I viewed the resulting volume and label in freeview they don’t seem to overlap correctly.
Did anyone have success in converting custom labels to volumes?
Thank you,
Dag Jolijn,
Heb jij je al aangemeld voor onderstaande Freesurfer course? Er is volgens mij nog steeds niets van die andere beschikbaar, dus ik twijfel ook om te gaan (zou wel nuttig zijn!). Al is het een beetje achter de feiten aan…
Vriendelijke groet,
Caroline
Van: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Namens Christophe Destrieux Verzonden: woensdag 3 februari 2016 18:00 Aan: freesurfer@nmr.mgh.harvard.edu Onderwerp: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016
Dear FreeSurfers,
It is our pleasure to welcome you the FreeSurfer course organized in Tours, Loire Valley, France, 2016 26-27th may. This event is coorganized by the brain and imaging laboratory, INSERM U930-Université François Rabelais of Tours (France) and by the Martinos Center for Biomedical Imaging in Charlestown, MA (USA) which develops and distributes FreeSurfer.http://freesurfer.net/ This course will be limited to 64 participants. It will focus on surface-based analysis of individual and group morphological data and on tractographic analysis using FreeSurfer tools. This course will be organized in the Ecole Polytechnique de l'Université de Tours For online registration, please visit : http://freesurfer2016.sciencesconf.org/?lang=en See you in Tours next May C Destrieux, F Andersson, L Barantin, S Love, M Sta, C Tauber
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Dear Caroline could you please resend it in english or in French ; I’m not too familiar with Flamish ; ) thanks
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Le 12 févr. 2016 à 09:53, Caroline Beelen caroline.beelen@ppw.kuleuven.be a écrit :
Dag Jolijn,
Heb jij je al aangemeld voor onderstaande Freesurfer course? Er is volgens mij nog steeds niets van die andere beschikbaar, dus ik twijfel ook om te gaan (zou wel nuttig zijn!). Al is het een beetje achter de feiten aan…
Vriendelijke groet,
Caroline
Van: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Namens Christophe Destrieux Verzonden: woensdag 3 februari 2016 18:00 Aan: freesurfer@nmr.mgh.harvard.edu Onderwerp: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016
Dear FreeSurfers,
It is our pleasure to welcome you the FreeSurfer course organized in Tours, Loire Valley, France, 2016 26-27th may. This event is coorganized by the brain and imaging laboratory, INSERM U930-Université François Rabelais of Tours (France) and by the Martinos Center for Biomedical Imaging in Charlestown, MA (USA) which develops and distributes FreeSurfer. http://freesurfer.net/ This course will be limited to 64 participants. It will focus on surface-based analysis of individual and group morphological data and on tractographic analysis using FreeSurfer tools. This course will be organized in the Ecole Polytechnique de l'Université de Tours For online registration, please visit : http://freesurfer2016.sciencesconf.org/?lang=en http://freesurfer2016.sciencesconf.org/?lang=en See you in Tours next May C Destrieux, F Andersson, L Barantin, S Love, M Sta, C Tauber
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Christophe,
Apologies, I wanted to forward the mail but instead replied to it. ;)
Regards, Caroline
Van: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Namens Christophe Destrieux Verzonden: vrijdag 12 februari 2016 10:45 Aan: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Onderwerp: Re: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016
Dear Caroline could you please resend it in english or in French ; I’m not too familiar with Flamish ; ) thanks
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Le 12 févr. 2016 à 09:53, Caroline Beelen <caroline.beelen@ppw.kuleuven.bemailto:caroline.beelen@ppw.kuleuven.be> a écrit :
Dag Jolijn,
Heb jij je al aangemeld voor onderstaande Freesurfer course? Er is volgens mij nog steeds niets van die andere beschikbaar, dus ik twijfel ook om te gaan (zou wel nuttig zijn!). Al is het een beetje achter de feiten aan…
Vriendelijke groet,
Caroline
Van: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Namens Christophe Destrieux Verzonden: woensdag 3 februari 2016 18:00 Aan: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Onderwerp: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016
Dear FreeSurfers,
It is our pleasure to welcome you the FreeSurfer course organized in Tours, Loire Valley, France, 2016 26-27th may. This event is coorganized by the brain and imaging laboratory, INSERM U930-Université François Rabelais of Tours (France) and by the Martinos Center for Biomedical Imaging in Charlestown, MA (USA) which develops and distributes FreeSurfer.http://freesurfer.net/ This course will be limited to 64 participants. It will focus on surface-based analysis of individual and group morphological data and on tractographic analysis using FreeSurfer tools. This course will be organized in the Ecole Polytechnique de l'Université de Tours For online registration, please visit : http://freesurfer2016.sciencesconf.org/?lang=en See you in Tours next May C Destrieux, F Andersson, L Barantin, S Love, M Sta, C Tauber
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Bon problem ; I guessed it was something like this ; )
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Le 12 févr. 2016 à 11:02, Caroline Beelen caroline.beelen@ppw.kuleuven.be a écrit :
Hi Christophe,
Apologies, I wanted to forward the mail but instead replied to it. ;)
Regards, Caroline
Van: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Namens Christophe Destrieux Verzonden: vrijdag 12 februari 2016 10:45 Aan: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Onderwerp: Re: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016
Dear Caroline could you please resend it in english or in French ; I’m not too familiar with Flamish ; ) thanks
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Le 12 févr. 2016 à 09:53, Caroline Beelen <caroline.beelen@ppw.kuleuven.be mailto:caroline.beelen@ppw.kuleuven.be> a écrit :
Dag Jolijn,
Heb jij je al aangemeld voor onderstaande Freesurfer course? Er is volgens mij nog steeds niets van die andere beschikbaar, dus ik twijfel ook om te gaan (zou wel nuttig zijn!). Al is het een beetje achter de feiten aan…
Vriendelijke groet,
Caroline
Van: freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Namens Christophe Destrieux Verzonden: woensdag 3 februari 2016 18:00 Aan: freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu Onderwerp: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016
Dear FreeSurfers,
It is our pleasure to welcome you the FreeSurfer course organized in Tours, Loire Valley, France, 2016 26-27th may. This event is coorganized by the brain and imaging laboratory, INSERM U930-Université François Rabelais of Tours (France) and by the Martinos Center for Biomedical Imaging in Charlestown, MA (USA) which develops and distributes FreeSurfer. http://freesurfer.net/ This course will be limited to 64 participants. It will focus on surface-based analysis of individual and group morphological data and on tractographic analysis using FreeSurfer tools. This course will be organized in the Ecole Polytechnique de l'Université de Tours For online registration, please visit : http://freesurfer2016.sciencesconf.org/?lang=en http://freesurfer2016.sciencesconf.org/?lang=en See you in Tours next May C Destrieux, F Andersson, L Barantin, S Love, M Sta, C Tauber
Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ http://www.u930.tours.inserm.fr/
Service de Neurochirurgie et Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé - 37032 Tours - France tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Caroline Beelen -
Christophe Destrieux -
m.abouelyazid＠gmail.com