Dear expert, I want to run recon-all for 100 subject simultaneously. I found the following link about it, but as I'm a beginner in this field, I don't understand how to use it. Would you please kindly give an example with a subject names, directory , etc. what should be written instead of * , or how could I define the number of subjects, ...? Thank you very much. https://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/Scripts/Two Best Regards
F.Keyvanfard
The * is what makes the script useful as that allows it to process all the subjects without you having to specify every subject. That script only works if you have already set up your subject's folders in the directory structure freesurfer expects. Is this the case? Or are you working from dicom files?
On 10/15/2016 02:52 PM, Farzaneh keyvanfard wrote:
/Dear expert,/ / / /I want to run recon-all for 100 subject /simultaneously. I found the following link about it, but as I'm a beginner in this field, I don't understand how to use it. Would you please kindly give an example with a subject names, directory , etc. what should be written instead of * , or how could I define the number of subjects, ...? Thank you very much. https://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/Scripts/Two Best Regards
F.Keyvanfard
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Farzaneh keyvanfard