Hi Devika

the very large defects can take a very long time to fix, and probably won't produce good results. They are typically caused by something significant going wrong - large portions of the skull left behind and connected to the surface, an incorrect aseg, that kind of thing. You should take a look at the orig.nofix and inflated.nofix over the wm.mgz for that hemisphere to diagnose what is going on.

Let us know how it goes.

cheers Bruce

On Wed, 29 Jan 2020, Devika K wrote:

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Hi Freesurfer Team,

I am running recon-all command in parallel. one of my subject's (recon-all.log file) is showing Xl defect and it has been in this step overnight and there is no further progress.  PFA of recon-all.log file and recon-all-status.log file of the above-mentioned subject. The recon-all process for this subject is not terminated with an error, it's still running.

Could you please help me to resolve this issue?

Regards Devika K Research Scholar, Dept of EEE e: k_devika@cb.students.amrita.edu Amrita Vishwa Vidyapeetham Coimbatore, India

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