Oops, that's a bug. I've fixed it locally in both dev and stable and put a new version here:

ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/selfreqavg

The autostimdur and acfbins do not apply to the retinotopy analysis. Your solution to remove them from the cfg is fine.

doug

romain valabregue wrote:

Hello

I am trying to analyze retiontopy data using the indication found : http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis

I first created the analysis with the comand : mkanalysis-sess -a rtopy -TR 2.8 -designtype retinotopy -paradigm rtopy.par -ncycles

But then when I try to run the anlysis with the comand : sfa-sess -a rtopy -s ../Sujet5_retino

I get the folowing error --- Parsing Config File: /homenasFC1/romdat/data/freesurfer_DB/Sujet5_retino/rtopy/analysis.cfg

---

-ncycles 7 -delay 0 -acfbins 10 -nskip 0 -fwhm 0 -noautostimdur ERROR: Flag -acfbins unrecognized. -ncycles 7 -delay 0 -acfbins 10 -nskip 0 -fwhm 0 -noautostimdur -TR 2.8 -o rtopy/polar/h -i 001/f -i 002/f -cfg /homenasFC1/romdat/data/freesurfer_DB/Sujet5_retino/rtopy/analysis.cfg -parname rtopy.par ERROR: selfreqavg failed

So I remove from the rtopy/analysis.cfg file the line -acfbins 10 I get an other error : ERROR: Flag -noautostimdur unrecognized. So I remove the line -noautostimdur

So I change from -ncycles 7 -delay 0 -acfbins 10 -nskip 0 -fwhm 0 -noautostimdur

to -ncycles 7 -delay 0 -nskip 0 -fwhm 0

Why it does not recognize thoses option, what are the diference on the model build ?

Thank for your help

Romain

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