apologies, the trac-all.log sent was for a prior attempt I did with a nii version of the diffusion data which did not work either I converted then to mnc, and the log is this -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cached Mem: 65903240 7003456 58899784 0 391760 5063564 -/+ buffers/cache: 1548132 64355108 Swap: 67032060 1791716 65240344
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cached Mem: 65903240 7004712 58898528 0 391760 5063564 -/+ buffers/cache: 1549388 64353852 Swap: 67032060 1791716 65240344
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 16:28:18 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, 1) k_ras = (-0, -1, -0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LSP INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 16:30:24 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- http://www1.imperial.ac.uk/medicine/people/d.soto/
________________________________________ From: Anastasia Yendiki [ayendiki@nmr.mgh.harvard.edu] Sent: 06 August 2013 16:17 To: Soto, David Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] trac-all inquiry
The first error is: niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
Does this file exist?
On Tue, 6 Aug 2013, Soto, David wrote:
here it is - thanks! dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log Tue Aug 6 01:57:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980064 59923176 0 83692 4482000 -/+ buffers/cache: 1414372 64488868 Swap: 67032060 1824148 65207912
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980856 59922384 0 83692 4482000 -/+ buffers/cache: 1415164 64488076 Swap: 67032060 1824148 65207912
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:00:22 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5982784 59920456 0 83932 4482156 -/+ buffers/cache: 1416696 64486544 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984932 59918308 0 83932 4482156 -/+ buffers/cache: 1418844 64484396 Swap: 67032060 1824120 65207940
New invocation of trac-all
Tue Aug 6 02:00:32 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5983252 59919988 0 83956 4482156 -/+ buffers/cache: 1417140 64486100 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984752 59918488 0 83956 4482156 -/+ buffers/cache: 1418640 64484600 Swap: 67032060 1824120 65207940
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:01:42 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984044 59919196 0 84144 4482192 -/+ buffers/cache: 1417708 64485532 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987064 59916176 0 84144 4482192 -/+ buffers/cache: 1420728 64482512 Swap: 67032060 1824104 65207956
New invocation of trac-all
Tue Aug 6 02:01:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5985300 59917940 0 84160 4482188 -/+ buffers/cache: 1418952 64484288 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986324 59916916 0 84160 4482188 -/+ buffers/cache: 1419976 64483264 Swap: 67032060 1824104 65207956
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:01:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:02:48 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984700 59918540 0 84336 4482212 -/+ buffers/cache: 1418152 64485088 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987120 59916120 0 84336 4482216 -/+ buffers/cache: 1420568 64482672 Swap: 67032060 1824076 65207984
New invocation of trac-all
Tue Aug 6 02:02:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986420 59916820 0 84348 4482212 -/+ buffers/cache: 1419860 64483380 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5988520 59914720 0 84348 4482212 -/+ buffers/cache: 1421960 64481280 Swap: 67032060 1824076 65207984
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:04:33 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142
New invocation of trac-all
Tue Aug 6 02:09:35 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5990572 59912668 0 85028 4482988 -/+ buffers/cache: 1422556 64480684 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5992728 59910512 0 85028 4482988 -/+ buffers/cache: 1424712 64478528 Swap: 67032060 1824048 65208012
New invocation of trac-all
Tue Aug 6 02:11:25 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5989716 59913524 0 85072 4482980 -/+ buffers/cache: 1421664 64481576 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5991732 59911508 0 85072 4482980 -/+ buffers/cache: 1423680 64479560 Swap: 67032060 1824048 65208012
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:11:26 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, 1) k_ras = (-0, -1, -0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LSP INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:15:07 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 6 clusters 0 k 4.000000 1 k 1038.000000 2 k 3.000000 3 k 1.000000 4 k 2.000000 5 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 12.000000 2 k 1.000000 3 k 1.000000 4 k 1038.000000 Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 458567 values in range Counting number of voxels Found 458567 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 737102 values in range Counting number of voxels Found 737102 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 19373 values in range Counting number of voxels Found 19373 voxels in final mask mri_binarize done fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt #------------------------------------- #@# Tensor fit Tue Aug 6 02:18:26 BST 2013 dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask terminate called after throwing an instance of 'RBD_COMMON::BaseException' #------------------------------------- #@# Priors Tue Aug 6 02:18:26 BST 2013 /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_!
roi2.flt .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh!
.ccg_PP_ roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt Training subject directory list: /tmp/subj33.02ST.15264.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 0 Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 572 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132) INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12) INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7) INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 39274 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 94 26 102 105 55 113 110 78 115 106 116 115 107 138 INFO: Distances between consecutive points are 32 26 38 22 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 17.678 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 441 streamlines for straying off mask INFO: Rejected 92 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7) INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 46198 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 92 30 77 104 62 65 110 82 66 107 112 71 110 143 INFO: Distances between consecutive points are 34 24 30 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 19.176 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 19 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142) INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9) INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5) INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 39318 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 130 139 35 134 104 58 130 83 68 116 50 72 109 35 60 INFO: Distances between consecutive points are 42 24 36 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 10.382 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133) INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28709 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 44 144 40 48 100 60 50 84 67 68 53 76 76 41 64 INFO: Distances between consecutive points are 48 18 37 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 11.356 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 67 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104) INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5) INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23343 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 124 144 40 128 128 47 125 126 59 109 151 62 107 168 58 INFO: Distances between consecutive points are 18 13 30 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 6.691 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 107 streamlines for straying off mask INFO: Rejected 120 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113) INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 26122 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 52 145 44 53 129 49 59 133 59 73 153 61 76 175 55 INFO: Distances between consecutive points are 17 12 24 23 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 8.203 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 2655 streamlines for straying off mask INFO: Rejected 231 streamlines for reversing direction INFO: Rejected 155 streamlines as length outliers INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166) INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 59210 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 116 58 86 91 91 84 62 64 87 72 38 111 INFO: Distances between consecutive points are 33 41 40 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 108 116 58 86 90 91 84 60 62 86 72 38 112 INFO: Distances between consecutive points are 34 42 42 37 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 61 86 89 91 84 61 60 86 72 39 112 INFO: Distances between consecutive points are 35 40 42 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 55 86 93 90 84 61 64 87 72 38 112 INFO: Distances between consecutive points are 35 42 41 38 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 56 86 93 90 84 61 65 87 72 38 112 INFO: Distances between consecutive points are 35 41 41 38 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 39 107 115 57 85 91 90 84 61 62 87 72 38 112 INFO: Distances between consecutive points are 34 41 41 36 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 115 60 86 88 90 85 61 59 86 72 39 115 INFO: Distances between consecutive points are 34 40 41 37 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 64 87 76 38 112 INFO: Distances between consecutive points are 35 39 39 39 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 114 61 85 89 90 84 61 63 87 71 40 111 INFO: Distances between consecutive points are 32 38 39 35 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 34 102 117 57 85 92 91 84 60 63 87 72 42 113 INFO: Distances between consecutive points are 31 42 43 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 65 87 72 43 113 INFO: Distances between consecutive points are 32 42 42 36 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 57 85 91 90 84 61 63 87 72 42 113 INFO: Distances between consecutive points are 33 41 40 35 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 59 85 91 91 84 60 65 87 71 40 111 INFO: Distances between consecutive points are 33 41 41 36 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 112 67 85 83 91 84 64 57 86 77 39 111 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 115 59 84 90 91 83 62 62 87 73 39 111 INFO: Distances between consecutive points are 35 41 41 35 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 64 86 88 90 83 63 61 88 77 39 114 INFO: Distances between consecutive points are 37 40 39 37 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 104 117 60 88 92 90 83 60 66 92 79 41 103 INFO: Distances between consecutive points are 36 39 41 33 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 63 87 77 37 110 INFO: Distances between consecutive points are 35 39 40 38 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 85 84 91 84 64 58 86 78 39 112 INFO: Distances between consecutive points are 35 38 39 35 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 60 88 80 41 111 INFO: Distances between consecutive points are 34 38 40 34 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 64 87 71 40 111 INFO: Distances between consecutive points are 32 42 43 36 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 37 105 117 62 89 91 90 83 60 67 92 77 41 103 INFO: Distances between consecutive points are 35 39 40 33 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 90 90 83 63 63 87 78 38 112 INFO: Distances between consecutive points are 35 40 38 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 60 85 89 90 85 60 61 87 72 42 113 INFO: Distances between consecutive points are 35 40 41 34 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 105 115 61 87 88 92 85 62 62 89 70 36 100 INFO: Distances between consecutive points are 33 41 40 29 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 59 88 96 88 84 63 71 88 71 38 97 INFO: Distances between consecutive points are 36 36 37 35 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 58 85 88 90 85 60 61 87 71 41 113 INFO: Distances between consecutive points are 34 42 40 35 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 107 115 60 87 90 91 85 62 63 91 78 41 110 INFO: Distances between consecutive points are 35 40 40 33 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 152 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 43 108 113 62 86 88 93 84 63 62 89 80 42 112 INFO: Distances between consecutive points are 34 40 40 35 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 108 114 62 88 88 91 85 62 61 90 78 42 110 INFO: Distances between consecutive points are 35 39 40 32 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 66 85 85 92 84 63 59 87 75 39 107 INFO: Distances between consecutive points are 35 38 40 31 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 112 67 85 83 91 84 64 57 86 77 39 110 INFO: Distances between consecutive points are 35 38 39 33 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 42 112 118 61 89 91 89 84 62 63 88 78 39 114 INFO: Distances between consecutive points are 33 39 39 39 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 35 99 117 60 86 92 91 84 60 66 87 70 39 106 INFO: Distances between consecutive points are 32 40 41 34 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 100 114 63 84 86 90 85 61 60 87 72 39 115 INFO: Distances between consecutive points are 33 39 39 37 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 105 117 60 88 92 90 83 60 68 92 79 41 104 INFO: Distances between consecutive points are 36 39 40 35 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 104 117 62 89 90 91 83 59 65 92 79 42 103 INFO: Distances between consecutive points are 36 40 41 32 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 34 101 114 58 85 93 90 85 64 65 89 76 38 109 INFO: Distances between consecutive points are 31 38 38 36 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 35 99 117 60 86 93 91 85 60 67 87 69 38 106 INFO: Distances between consecutive points are 31 39 41 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 102 117 57 85 94 91 85 61 68 87 70 39 106 INFO: Distances between consecutive points are 31 41 40 36 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 34 99 117 61 86 91 91 84 60 65 87 70 39 107 INFO: Distances between consecutive points are 33 40 41 34 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 42 107 112 65 86 84 91 84 64 59 86 78 40 111 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 41 115 116 56 87 98 88 84 64 73 88 71 38 97 INFO: Distances between consecutive points are 35 37 37 37 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 100 114 62 84 88 90 84 62 60 87 73 42 112 INFO: Distances between consecutive points are 35 38 40 33 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 90 89 84 64 62 88 79 39 114 INFO: Distances between consecutive points are 34 39 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 60 87 96 90 84 64 72 87 72 38 97 INFO: Distances between consecutive points are 34 37 37 36 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 89 89 83 64 60 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 36 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 106 113 63 87 87 92 84 62 63 89 70 36 100 INFO: Distances between consecutive points are 33 39 39 30 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 107 113 64 87 87 91 84 62 61 89 70 36 100 INFO: Distances between consecutive points are 34 38 39 28 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 42 107 113 62 86 89 92 84 62 65 90 70 36 100 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 116 57 88 98 88 84 66 74 86 72 38 97 INFO: Distances between consecutive points are 34 36 35 38 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 88 77 38 106 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 112 67 85 82 90 84 65 57 84 78 39 112 INFO: Distances between consecutive points are 34 38 37 36 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 61 84 89 90 84 62 64 87 72 40 111 INFO: Distances between consecutive points are 35 38 38 35 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 118 63 89 93 90 84 62 69 88 71 37 97 INFO: Distances between consecutive points are 31 37 38 34 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 41 106 112 66 87 85 91 84 63 59 89 79 41 110 INFO: Distances between consecutive points are 34 37 39 32 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 86 85 92 84 63 60 87 77 38 106 INFO: Distances between consecutive points are 35 38 39 32 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 106 114 63 89 89 92 85 62 66 91 70 36 100 INFO: Distances between consecutive points are 33 38 38 32 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 93 113 68 87 86 91 85 60 60 86 72 38 112 INFO: Distances between consecutive points are 32 36 40 36 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 107 113 64 89 87 91 85 62 61 90 78 41 110 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 43 107 118 61 88 95 89 84 63 72 88 71 37 97 INFO: Distances between consecutive points are 29 36 36 37 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 65 86 87 93 84 63 62 87 77 37 105 INFO: Distances between consecutive points are 34 38 39 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 60 85 92 88 83 60 68 85 72 35 102 INFO: Distances between consecutive points are 35 40 38 39 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 60 88 91 89 84 64 61 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 37 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 63 86 89 88 83 62 63 85 75 35 108 INFO: Distances between consecutive points are 37 40 37 38 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 65 85 74 35 106 INFO: Distances between consecutive points are 36 40 37 39 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 32 101 114 59 83 90 91 84 62 62 87 72 40 111 INFO: Distances between consecutive points are 35 40 40 34 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 65 86 86 92 84 63 62 88 77 38 108 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 64 86 89 93 83 64 66 90 71 36 100 INFO: Distances between consecutive points are 34 38 37 32 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 61 86 91 88 83 61 67 85 74 35 106 INFO: Distances between consecutive points are 35 40 37 40 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 62 88 89 91 84 64 63 87 75 34 104 INFO: Distances between consecutive points are 35 39 38 35 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 87 77 38 106 INFO: Distances between consecutive points are 34 38 39 33 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 38 111 119 61 87 91 90 83 59 67 86 71 35 102 INFO: Distances between consecutive points are 38 41 40 38 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 59 85 92 88 82 63 66 84 75 35 106 INFO: Distances between consecutive points are 39 38 36 40 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 62 84 88 90 84 61 62 87 72 41 110 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 78 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 59 88 96 89 84 63 72 88 71 38 97 INFO: Distances between consecutive points are 33 37 37 36 WARN: Could not find satisfactory control point fit - try 79 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 60 85 90 90 82 64 63 87 77 38 110 INFO: Distances between consecutive points are 39 40 38 36 WARN: Could not find satisfactory control point fit - try 80 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 82 90 84 64 59 85 79 40 110 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 81 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 83 90 84 64 59 85 80 42 111 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 82 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 114 58 83 91 90 84 63 65 87 73 42 113 INFO: Distances between consecutive points are 34 39 38 36 WARN: Could not find satisfactory control point fit - try 83 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 59 83 90 90 84 62 60 87 73 42 113 INFO: Distances between consecutive points are 34 39 41 33 WARN: Could not find satisfactory control point fit - try 84 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 58 85 93 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 39 38 37 41 WARN: Could not find satisfactory control point fit - try 85 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 73 38 111 INFO: Distances between consecutive points are 32 36 38 35 WARN: Could not find satisfactory control point fit - try 86 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 64 85 75 35 108 INFO: Distances between consecutive points are 36 40 38 40 WARN: Could not find satisfactory control point fit - try 87 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 58 85 94 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 38 37 37 41 WARN: Could not find satisfactory control point fit - try 88 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 93 88 83 62 69 85 76 37 104 INFO: Distances between consecutive points are 34 38 36 40 WARN: Could not find satisfactory control point fit - try 89 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 36 100 117 62 86 92 91 86 62 67 89 78 41 107 INFO: Distances between consecutive points are 33 38 39 35 WARN: Could not find satisfactory control point fit - try 90 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 113 116 57 88 97 88 84 65 73 87 71 38 97 INFO: Distances between consecutive points are 32 37 35 37 WARN: Could not find satisfactory control point fit - try 91 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 95 88 83 62 70 85 75 36 105 INFO: Distances between consecutive points are 34 37 38 42 WARN: Could not find satisfactory control point fit - try 92 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 117 62 86 94 90 83 64 72 87 72 40 96 INFO: Distances between consecutive points are 31 36 35 34 WARN: Could not find satisfactory control point fit - try 93 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 62 88 90 89 84 64 65 87 74 33 101 INFO: Distances between consecutive points are 35 36 36 36 WARN: Could not find satisfactory control point fit - try 94 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 37 103 114 68 86 85 91 84 64 62 86 74 33 101 INFO: Distances between consecutive points are 36 37 36 34 WARN: Could not find satisfactory control point fit - try 95 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 59 85 93 89 81 63 68 84 76 35 106 INFO: Distances between consecutive points are 39 38 37 42 WARN: Could not find satisfactory control point fit - try 96 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 60 84 92 90 82 64 66 86 77 38 110 INFO: Distances between consecutive points are 36 39 37 39 WARN: Could not find satisfactory control point fit - try 97 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 106 120 64 87 89 90 84 59 67 85 71 35 102 INFO: Distances between consecutive points are 35 41 38 38 WARN: Could not find satisfactory control point fit - try 98 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 99 114 61 81 89 91 83 62 61 86 74 40 112 INFO: Distances between consecutive points are 36 39 40 36 WARN: Could not find satisfactory control point fit - try 99 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 92 111 69 84 83 89 85 61 59 86 72 39 112 INFO: Distances between consecutive points are 32 34 37 35 WARN: Could not find satisfactory control point fit - try 100 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 2212.85 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 839 streamlines for straying off mask INFO: Rejected 304 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119) Processing pathway 8 of 18... Matching streamline ends INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119) INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 67506 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 98 193 75 108 164 69 88 150 75 73 168 69 83 193 81 INFO: Distances between consecutive points are 31 25 24 29 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 57.864 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 83 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 47 streamlines as length outliers INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 42884 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 107 187 71 113 167 73 111 158 74 107 138 80 95 113 81 INFO: Distances between consecutive points are 21 9 21 28 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 9.28 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 38520 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 69 194 85 71 186 82 68 157 78 81 115 78 82 111 78 INFO: Distances between consecutive points are 9 29 44 4 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.144 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 3 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134) INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7) INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20097 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 74 96 101 81 101 96 112 105 97 139 100 97 163 79 INFO: Distances between consecutive points are 9 32 27 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.013 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2) INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18871 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 82 98 81 98 104 83 128 104 82 160 90 86 164 93 INFO: Distances between consecutive points are 17 30 35 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 6.164 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 52 streamlines for straying off mask INFO: Rejected 62 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92) INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12) INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5) INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17882 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 104 74 79 105 85 70 114 106 49 117 118 44 118 133 39 INFO: Distances between consecutive points are 14 31 13 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 4.921 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 491 streamlines for straying off mask INFO: Rejected 76 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99) INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 15900 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 74 76 85 65 107 47 61 115 43 61 119 42 64 128 39 INFO: Distances between consecutive points are 50 10 4 10 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 3.905 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 181 streamlines for straying off mask INFO: Rejected 652 streamlines for reversing direction INFO: Rejected 40 streamlines as length outliers INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103) INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3) INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 150 131 96 134 121 97 128 98 103 131 85 104 146 86 115 INFO: Distances between consecutive points are 19 25 13 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 7.66 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 311 streamlines for straying off mask INFO: Rejected 458 streamlines for reversing direction INFO: Rejected 95 streamlines as length outliers INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3) INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 65106 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 31 133 95 50 121 100 53 100 105 53 83 102 42 73 113 INFO: Distances between consecutive points are 23 22 17 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 16.605 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 353 streamlines for straying off mask INFO: Rejected 59 streamlines for reversing direction INFO: Rejected 77 streamlines as length outliers INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45630 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 135 97 130 120 98 125 87 98 135 80 70 149 73 70 INFO: Distances between consecutive points are 23 33 31 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.592 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132) INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31157 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 139 102 52 127 99 55 93 101 46 81 79 29 71 78 INFO: Distances between consecutive points are 23 34 27 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.246 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
New invocation of trac-all
Tue Aug 6 08:19:08 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 6936780 58966460 0 372776 5055680 -/+ buffers/cache: 1508324 64394916 Swap: 67032060 1816772 65215288
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat ^C dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ ^C dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ ^C dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log Tue Aug 6 01:57:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980064 59923176 0 83692 4482000 -/+ buffers/cache: 1414372 64488868 Swap: 67032060 1824148 65207912
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980856 59922384 0 83692 4482000 -/+ buffers/cache: 1415164 64488076 Swap: 67032060 1824148 65207912
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:00:22 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5982784 59920456 0 83932 4482156 -/+ buffers/cache: 1416696 64486544 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984932 59918308 0 83932 4482156 -/+ buffers/cache: 1418844 64484396 Swap: 67032060 1824120 65207940
New invocation of trac-all
Tue Aug 6 02:00:32 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5983252 59919988 0 83956 4482156 -/+ buffers/cache: 1417140 64486100 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984752 59918488 0 83956 4482156 -/+ buffers/cache: 1418640 64484600 Swap: 67032060 1824120 65207940
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:01:42 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984044 59919196 0 84144 4482192 -/+ buffers/cache: 1417708 64485532 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987064 59916176 0 84144 4482192 -/+ buffers/cache: 1420728 64482512 Swap: 67032060 1824104 65207956
New invocation of trac-all
Tue Aug 6 02:01:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5985300 59917940 0 84160 4482188 -/+ buffers/cache: 1418952 64484288 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986324 59916916 0 84160 4482188 -/+ buffers/cache: 1419976 64483264 Swap: 67032060 1824104 65207956
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:01:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:02:48 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984700 59918540 0 84336 4482212 -/+ buffers/cache: 1418152 64485088 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987120 59916120 0 84336 4482216 -/+ buffers/cache: 1420568 64482672 Swap: 67032060 1824076 65207984
New invocation of trac-all
Tue Aug 6 02:02:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986420 59916820 0 84348 4482212 -/+ buffers/cache: 1419860 64483380 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5988520 59914720 0 84348 4482212 -/+ buffers/cache: 1421960 64481280 Swap: 67032060 1824076 65207984
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:04:33 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142
New invocation of trac-all
Tue Aug 6 02:09:35 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5990572 59912668 0 85028 4482988 -/+ buffers/cache: 1422556 64480684 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5992728 59910512 0 85028 4482988 -/+ buffers/cache: 1424712 64478528 Swap: 67032060 1824048 65208012
New invocation of trac-all
Tue Aug 6 02:11:25 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5989716 59913524 0 85072 4482980 -/+ buffers/cache: 1421664 64481576 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5991732 59911508 0 85072 4482980 -/+ buffers/cache: 1423680 64479560 Swap: 67032060 1824048 65208012
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:11:26 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, 1) k_ras = (-0, -1, -0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LSP INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:15:07 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 6 clusters 0 k 4.000000 1 k 1038.000000 2 k 3.000000 3 k 1.000000 4 k 2.000000 5 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 12.000000 2 k 1.000000 3 k 1.000000 4 k 1038.000000 Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 458567 values in range Counting number of voxels Found 458567 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 737102 values in range Counting number of voxels Found 737102 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 19373 values in range Counting number of voxels Found 19373 voxels in final mask mri_binarize done fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt #------------------------------------- #@# Tensor fit Tue Aug 6 02:18:26 BST 2013 dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask terminate called after throwing an instance of 'RBD_COMMON::BaseException' #------------------------------------- #@# Priors Tue Aug 6 02:18:26 BST 2013 /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_!
roi2.flt .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh!
.ccg_PP_ roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt Training subject directory list: /tmp/subj33.02ST.15264.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 0 Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 572 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132) INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12) INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7) INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 39274 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 94 26 102 105 55 113 110 78 115 106 116 115 107 138 INFO: Distances between consecutive points are 32 26 38 22 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 17.678 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 441 streamlines for straying off mask INFO: Rejected 92 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7) INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 46198 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 92 30 77 104 62 65 110 82 66 107 112 71 110 143 INFO: Distances between consecutive points are 34 24 30 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 19.176 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 19 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142) INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9) INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5) INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 39318 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 130 139 35 134 104 58 130 83 68 116 50 72 109 35 60 INFO: Distances between consecutive points are 42 24 36 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 10.382 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133) INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28709 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 44 144 40 48 100 60 50 84 67 68 53 76 76 41 64 INFO: Distances between consecutive points are 48 18 37 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 11.356 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 67 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104) INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5) INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23343 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 124 144 40 128 128 47 125 126 59 109 151 62 107 168 58 INFO: Distances between consecutive points are 18 13 30 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 6.691 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 107 streamlines for straying off mask INFO: Rejected 120 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113) INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 26122 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 52 145 44 53 129 49 59 133 59 73 153 61 76 175 55 INFO: Distances between consecutive points are 17 12 24 23 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 8.203 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 2655 streamlines for straying off mask INFO: Rejected 231 streamlines for reversing direction INFO: Rejected 155 streamlines as length outliers INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166) INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 59210 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 116 58 86 91 91 84 62 64 87 72 38 111 INFO: Distances between consecutive points are 33 41 40 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 108 116 58 86 90 91 84 60 62 86 72 38 112 INFO: Distances between consecutive points are 34 42 42 37 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 61 86 89 91 84 61 60 86 72 39 112 INFO: Distances between consecutive points are 35 40 42 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 55 86 93 90 84 61 64 87 72 38 112 INFO: Distances between consecutive points are 35 42 41 38 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 56 86 93 90 84 61 65 87 72 38 112 INFO: Distances between consecutive points are 35 41 41 38 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 39 107 115 57 85 91 90 84 61 62 87 72 38 112 INFO: Distances between consecutive points are 34 41 41 36 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 115 60 86 88 90 85 61 59 86 72 39 115 INFO: Distances between consecutive points are 34 40 41 37 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 64 87 76 38 112 INFO: Distances between consecutive points are 35 39 39 39 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 114 61 85 89 90 84 61 63 87 71 40 111 INFO: Distances between consecutive points are 32 38 39 35 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 34 102 117 57 85 92 91 84 60 63 87 72 42 113 INFO: Distances between consecutive points are 31 42 43 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 65 87 72 43 113 INFO: Distances between consecutive points are 32 42 42 36 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 57 85 91 90 84 61 63 87 72 42 113 INFO: Distances between consecutive points are 33 41 40 35 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 59 85 91 91 84 60 65 87 71 40 111 INFO: Distances between consecutive points are 33 41 41 36 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 112 67 85 83 91 84 64 57 86 77 39 111 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 115 59 84 90 91 83 62 62 87 73 39 111 INFO: Distances between consecutive points are 35 41 41 35 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 64 86 88 90 83 63 61 88 77 39 114 INFO: Distances between consecutive points are 37 40 39 37 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 104 117 60 88 92 90 83 60 66 92 79 41 103 INFO: Distances between consecutive points are 36 39 41 33 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 63 87 77 37 110 INFO: Distances between consecutive points are 35 39 40 38 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 85 84 91 84 64 58 86 78 39 112 INFO: Distances between consecutive points are 35 38 39 35 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 60 88 80 41 111 INFO: Distances between consecutive points are 34 38 40 34 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 64 87 71 40 111 INFO: Distances between consecutive points are 32 42 43 36 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 37 105 117 62 89 91 90 83 60 67 92 77 41 103 INFO: Distances between consecutive points are 35 39 40 33 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 90 90 83 63 63 87 78 38 112 INFO: Distances between consecutive points are 35 40 38 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 60 85 89 90 85 60 61 87 72 42 113 INFO: Distances between consecutive points are 35 40 41 34 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 105 115 61 87 88 92 85 62 62 89 70 36 100 INFO: Distances between consecutive points are 33 41 40 29 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 59 88 96 88 84 63 71 88 71 38 97 INFO: Distances between consecutive points are 36 36 37 35 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 58 85 88 90 85 60 61 87 71 41 113 INFO: Distances between consecutive points are 34 42 40 35 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 107 115 60 87 90 91 85 62 63 91 78 41 110 INFO: Distances between consecutive points are 35 40 40 33 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 152 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 43 108 113 62 86 88 93 84 63 62 89 80 42 112 INFO: Distances between consecutive points are 34 40 40 35 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 108 114 62 88 88 91 85 62 61 90 78 42 110 INFO: Distances between consecutive points are 35 39 40 32 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 66 85 85 92 84 63 59 87 75 39 107 INFO: Distances between consecutive points are 35 38 40 31 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 112 67 85 83 91 84 64 57 86 77 39 110 INFO: Distances between consecutive points are 35 38 39 33 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 42 112 118 61 89 91 89 84 62 63 88 78 39 114 INFO: Distances between consecutive points are 33 39 39 39 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 35 99 117 60 86 92 91 84 60 66 87 70 39 106 INFO: Distances between consecutive points are 32 40 41 34 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 100 114 63 84 86 90 85 61 60 87 72 39 115 INFO: Distances between consecutive points are 33 39 39 37 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 105 117 60 88 92 90 83 60 68 92 79 41 104 INFO: Distances between consecutive points are 36 39 40 35 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 104 117 62 89 90 91 83 59 65 92 79 42 103 INFO: Distances between consecutive points are 36 40 41 32 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 34 101 114 58 85 93 90 85 64 65 89 76 38 109 INFO: Distances between consecutive points are 31 38 38 36 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 35 99 117 60 86 93 91 85 60 67 87 69 38 106 INFO: Distances between consecutive points are 31 39 41 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 102 117 57 85 94 91 85 61 68 87 70 39 106 INFO: Distances between consecutive points are 31 41 40 36 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 34 99 117 61 86 91 91 84 60 65 87 70 39 107 INFO: Distances between consecutive points are 33 40 41 34 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 42 107 112 65 86 84 91 84 64 59 86 78 40 111 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 41 115 116 56 87 98 88 84 64 73 88 71 38 97 INFO: Distances between consecutive points are 35 37 37 37 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 100 114 62 84 88 90 84 62 60 87 73 42 112 INFO: Distances between consecutive points are 35 38 40 33 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 90 89 84 64 62 88 79 39 114 INFO: Distances between consecutive points are 34 39 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 60 87 96 90 84 64 72 87 72 38 97 INFO: Distances between consecutive points are 34 37 37 36 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 89 89 83 64 60 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 36 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 106 113 63 87 87 92 84 62 63 89 70 36 100 INFO: Distances between consecutive points are 33 39 39 30 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 107 113 64 87 87 91 84 62 61 89 70 36 100 INFO: Distances between consecutive points are 34 38 39 28 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 42 107 113 62 86 89 92 84 62 65 90 70 36 100 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 116 57 88 98 88 84 66 74 86 72 38 97 INFO: Distances between consecutive points are 34 36 35 38 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 88 77 38 106 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 112 67 85 82 90 84 65 57 84 78 39 112 INFO: Distances between consecutive points are 34 38 37 36 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 61 84 89 90 84 62 64 87 72 40 111 INFO: Distances between consecutive points are 35 38 38 35 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 118 63 89 93 90 84 62 69 88 71 37 97 INFO: Distances between consecutive points are 31 37 38 34 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 41 106 112 66 87 85 91 84 63 59 89 79 41 110 INFO: Distances between consecutive points are 34 37 39 32 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 86 85 92 84 63 60 87 77 38 106 INFO: Distances between consecutive points are 35 38 39 32 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 106 114 63 89 89 92 85 62 66 91 70 36 100 INFO: Distances between consecutive points are 33 38 38 32 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 93 113 68 87 86 91 85 60 60 86 72 38 112 INFO: Distances between consecutive points are 32 36 40 36 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 107 113 64 89 87 91 85 62 61 90 78 41 110 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 43 107 118 61 88 95 89 84 63 72 88 71 37 97 INFO: Distances between consecutive points are 29 36 36 37 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 65 86 87 93 84 63 62 87 77 37 105 INFO: Distances between consecutive points are 34 38 39 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 60 85 92 88 83 60 68 85 72 35 102 INFO: Distances between consecutive points are 35 40 38 39 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 60 88 91 89 84 64 61 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 37 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 63 86 89 88 83 62 63 85 75 35 108 INFO: Distances between consecutive points are 37 40 37 38 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 65 85 74 35 106 INFO: Distances between consecutive points are 36 40 37 39 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 32 101 114 59 83 90 91 84 62 62 87 72 40 111 INFO: Distances between consecutive points are 35 40 40 34 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 65 86 86 92 84 63 62 88 77 38 108 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 64 86 89 93 83 64 66 90 71 36 100 INFO: Distances between consecutive points are 34 38 37 32 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 61 86 91 88 83 61 67 85 74 35 106 INFO: Distances between consecutive points are 35 40 37 40 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 62 88 89 91 84 64 63 87 75 34 104 INFO: Distances between consecutive points are 35 39 38 35 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 87 77 38 106 INFO: Distances between consecutive points are 34 38 39 33 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 38 111 119 61 87 91 90 83 59 67 86 71 35 102 INFO: Distances between consecutive points are 38 41 40 38 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 59 85 92 88 82 63 66 84 75 35 106 INFO: Distances between consecutive points are 39 38 36 40 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 62 84 88 90 84 61 62 87 72 41 110 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 78 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 59 88 96 89 84 63 72 88 71 38 97 INFO: Distances between consecutive points are 33 37 37 36 WARN: Could not find satisfactory control point fit - try 79 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 60 85 90 90 82 64 63 87 77 38 110 INFO: Distances between consecutive points are 39 40 38 36 WARN: Could not find satisfactory control point fit - try 80 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 82 90 84 64 59 85 79 40 110 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 81 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 83 90 84 64 59 85 80 42 111 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 82 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 114 58 83 91 90 84 63 65 87 73 42 113 INFO: Distances between consecutive points are 34 39 38 36 WARN: Could not find satisfactory control point fit - try 83 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 59 83 90 90 84 62 60 87 73 42 113 INFO: Distances between consecutive points are 34 39 41 33 WARN: Could not find satisfactory control point fit - try 84 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 58 85 93 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 39 38 37 41 WARN: Could not find satisfactory control point fit - try 85 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 73 38 111 INFO: Distances between consecutive points are 32 36 38 35 WARN: Could not find satisfactory control point fit - try 86 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 64 85 75 35 108 INFO: Distances between consecutive points are 36 40 38 40 WARN: Could not find satisfactory control point fit - try 87 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 58 85 94 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 38 37 37 41 WARN: Could not find satisfactory control point fit - try 88 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 93 88 83 62 69 85 76 37 104 INFO: Distances between consecutive points are 34 38 36 40 WARN: Could not find satisfactory control point fit - try 89 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 36 100 117 62 86 92 91 86 62 67 89 78 41 107 INFO: Distances between consecutive points are 33 38 39 35 WARN: Could not find satisfactory control point fit - try 90 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 113 116 57 88 97 88 84 65 73 87 71 38 97 INFO: Distances between consecutive points are 32 37 35 37 WARN: Could not find satisfactory control point fit - try 91 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 95 88 83 62 70 85 75 36 105 INFO: Distances between consecutive points are 34 37 38 42 WARN: Could not find satisfactory control point fit - try 92 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 117 62 86 94 90 83 64 72 87 72 40 96 INFO: Distances between consecutive points are 31 36 35 34 WARN: Could not find satisfactory control point fit - try 93 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 62 88 90 89 84 64 65 87 74 33 101 INFO: Distances between consecutive points are 35 36 36 36 WARN: Could not find satisfactory control point fit - try 94 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 37 103 114 68 86 85 91 84 64 62 86 74 33 101 INFO: Distances between consecutive points are 36 37 36 34 WARN: Could not find satisfactory control point fit - try 95 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 59 85 93 89 81 63 68 84 76 35 106 INFO: Distances between consecutive points are 39 38 37 42 WARN: Could not find satisfactory control point fit - try 96 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 60 84 92 90 82 64 66 86 77 38 110 INFO: Distances between consecutive points are 36 39 37 39 WARN: Could not find satisfactory control point fit - try 97 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 106 120 64 87 89 90 84 59 67 85 71 35 102 INFO: Distances between consecutive points are 35 41 38 38 WARN: Could not find satisfactory control point fit - try 98 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 99 114 61 81 89 91 83 62 61 86 74 40 112 INFO: Distances between consecutive points are 36 39 40 36 WARN: Could not find satisfactory control point fit - try 99 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 92 111 69 84 83 89 85 61 59 86 72 39 112 INFO: Distances between consecutive points are 32 34 37 35 WARN: Could not find satisfactory control point fit - try 100 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 2212.85 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 839 streamlines for straying off mask INFO: Rejected 304 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119) Processing pathway 8 of 18... Matching streamline ends INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119) INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 67506 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 98 193 75 108 164 69 88 150 75 73 168 69 83 193 81 INFO: Distances between consecutive points are 31 25 24 29 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 57.864 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 83 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 47 streamlines as length outliers INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 42884 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 107 187 71 113 167 73 111 158 74 107 138 80 95 113 81 INFO: Distances between consecutive points are 21 9 21 28 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 9.28 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 38520 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 69 194 85 71 186 82 68 157 78 81 115 78 82 111 78 INFO: Distances between consecutive points are 9 29 44 4 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.144 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 3 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134) INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7) INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20097 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 74 96 101 81 101 96 112 105 97 139 100 97 163 79 INFO: Distances between consecutive points are 9 32 27 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.013 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2) INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18871 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 82 98 81 98 104 83 128 104 82 160 90 86 164 93 INFO: Distances between consecutive points are 17 30 35 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 6.164 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 52 streamlines for straying off mask INFO: Rejected 62 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92) INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12) INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5) INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17882 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 104 74 79 105 85 70 114 106 49 117 118 44 118 133 39 INFO: Distances between consecutive points are 14 31 13 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 4.921 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 491 streamlines for straying off mask INFO: Rejected 76 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99) INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 15900 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 74 76 85 65 107 47 61 115 43 61 119 42 64 128 39 INFO: Distances between consecutive points are 50 10 4 10 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 3.905 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 181 streamlines for straying off mask INFO: Rejected 652 streamlines for reversing direction INFO: Rejected 40 streamlines as length outliers INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103) INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3) INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 150 131 96 134 121 97 128 98 103 131 85 104 146 86 115 INFO: Distances between consecutive points are 19 25 13 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 7.66 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 311 streamlines for straying off mask INFO: Rejected 458 streamlines for reversing direction INFO: Rejected 95 streamlines as length outliers INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3) INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 65106 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 31 133 95 50 121 100 53 100 105 53 83 102 42 73 113 INFO: Distances between consecutive points are 23 22 17 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 16.605 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 353 streamlines for straying off mask INFO: Rejected 59 streamlines for reversing direction INFO: Rejected 77 streamlines as length outliers INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45630 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 135 97 130 120 98 125 87 98 135 80 70 149 73 70 INFO: Distances between consecutive points are 23 33 31 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.592 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132) INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31157 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 139 102 52 127 99 55 93 101 46 81 79 29 71 78 INFO: Distances between consecutive points are 23 34 27 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.246 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
New invocation of trac-all
Tue Aug 6 08:19:08 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 6936780 58966460 0 372776 5055680 -/+ buffers/cache: 1508324 64394916 Swap: 67032060 1816772 65215288
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log Tue Aug 6 01:57:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980064 59923176 0 83692 4482000 -/+ buffers/cache: 1414372 64488868 Swap: 67032060 1824148 65207912
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980856 59922384 0 83692 4482000 -/+ buffers/cache: 1415164 64488076 Swap: 67032060 1824148 65207912
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:00:22 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5982784 59920456 0 83932 4482156 -/+ buffers/cache: 1416696 64486544 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984932 59918308 0 83932 4482156 -/+ buffers/cache: 1418844 64484396 Swap: 67032060 1824120 65207940
New invocation of trac-all
Tue Aug 6 02:00:32 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5983252 59919988 0 83956 4482156 -/+ buffers/cache: 1417140 64486100 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984752 59918488 0 83956 4482156 -/+ buffers/cache: 1418640 64484600 Swap: 67032060 1824120 65207940
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:01:42 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984044 59919196 0 84144 4482192 -/+ buffers/cache: 1417708 64485532 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987064 59916176 0 84144 4482192 -/+ buffers/cache: 1420728 64482512 Swap: 67032060 1824104 65207956
New invocation of trac-all
Tue Aug 6 02:01:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5985300 59917940 0 84160 4482188 -/+ buffers/cache: 1418952 64484288 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986324 59916916 0 84160 4482188 -/+ buffers/cache: 1419976 64483264 Swap: 67032060 1824104 65207956
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:01:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:02:48 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984700 59918540 0 84336 4482212 -/+ buffers/cache: 1418152 64485088 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987120 59916120 0 84336 4482216 -/+ buffers/cache: 1420568 64482672 Swap: 67032060 1824076 65207984
New invocation of trac-all
Tue Aug 6 02:02:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986420 59916820 0 84348 4482212 -/+ buffers/cache: 1419860 64483380 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5988520 59914720 0 84348 4482212 -/+ buffers/cache: 1421960 64481280 Swap: 67032060 1824076 65207984
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:04:33 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142
New invocation of trac-all
Tue Aug 6 02:09:35 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5990572 59912668 0 85028 4482988 -/+ buffers/cache: 1422556 64480684 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5992728 59910512 0 85028 4482988 -/+ buffers/cache: 1424712 64478528 Swap: 67032060 1824048 65208012
New invocation of trac-all
Tue Aug 6 02:11:25 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5989716 59913524 0 85072 4482980 -/+ buffers/cache: 1421664 64481576 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5991732 59911508 0 85072 4482980 -/+ buffers/cache: 1423680 64479560 Swap: 67032060 1824048 65208012
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:11:26 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, 1) k_ras = (-0, -1, -0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LSP INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:15:07 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 6 clusters 0 k 4.000000 1 k 1038.000000 2 k 3.000000 3 k 1.000000 4 k 2.000000 5 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 12.000000 2 k 1.000000 3 k 1.000000 4 k 1038.000000 Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 458567 values in range Counting number of voxels Found 458567 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 737102 values in range Counting number of voxels Found 737102 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 19373 values in range Counting number of voxels Found 19373 voxels in final mask mri_binarize done fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt #------------------------------------- #@# Tensor fit Tue Aug 6 02:18:26 BST 2013 dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask terminate called after throwing an instance of 'RBD_COMMON::BaseException' #------------------------------------- #@# Priors Tue Aug 6 02:18:26 BST 2013 /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_!
roi2.flt .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh!
.ccg_PP_ roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt Training subject directory list: /tmp/subj33.02ST.15264.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 0 Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 572 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132) INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12) INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7) INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 39274 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 94 26 102 105 55 113 110 78 115 106 116 115 107 138 INFO: Distances between consecutive points are 32 26 38 22 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 17.678 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 441 streamlines for straying off mask INFO: Rejected 92 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7) INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 46198 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 92 30 77 104 62 65 110 82 66 107 112 71 110 143 INFO: Distances between consecutive points are 34 24 30 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 19.176 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 19 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142) INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9) INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5) INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 39318 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 130 139 35 134 104 58 130 83 68 116 50 72 109 35 60 INFO: Distances between consecutive points are 42 24 36 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 10.382 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133) INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28709 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 44 144 40 48 100 60 50 84 67 68 53 76 76 41 64 INFO: Distances between consecutive points are 48 18 37 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 11.356 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 67 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104) INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5) INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23343 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 124 144 40 128 128 47 125 126 59 109 151 62 107 168 58 INFO: Distances between consecutive points are 18 13 30 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 6.691 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 107 streamlines for straying off mask INFO: Rejected 120 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113) INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 26122 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 52 145 44 53 129 49 59 133 59 73 153 61 76 175 55 INFO: Distances between consecutive points are 17 12 24 23 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 8.203 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 2655 streamlines for straying off mask INFO: Rejected 231 streamlines for reversing direction INFO: Rejected 155 streamlines as length outliers INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166) INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 59210 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 116 58 86 91 91 84 62 64 87 72 38 111 INFO: Distances between consecutive points are 33 41 40 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 108 116 58 86 90 91 84 60 62 86 72 38 112 INFO: Distances between consecutive points are 34 42 42 37 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 61 86 89 91 84 61 60 86 72 39 112 INFO: Distances between consecutive points are 35 40 42 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 55 86 93 90 84 61 64 87 72 38 112 INFO: Distances between consecutive points are 35 42 41 38 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 56 86 93 90 84 61 65 87 72 38 112 INFO: Distances between consecutive points are 35 41 41 38 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 39 107 115 57 85 91 90 84 61 62 87 72 38 112 INFO: Distances between consecutive points are 34 41 41 36 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 115 60 86 88 90 85 61 59 86 72 39 115 INFO: Distances between consecutive points are 34 40 41 37 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 64 87 76 38 112 INFO: Distances between consecutive points are 35 39 39 39 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 114 61 85 89 90 84 61 63 87 71 40 111 INFO: Distances between consecutive points are 32 38 39 35 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 34 102 117 57 85 92 91 84 60 63 87 72 42 113 INFO: Distances between consecutive points are 31 42 43 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 65 87 72 43 113 INFO: Distances between consecutive points are 32 42 42 36 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 57 85 91 90 84 61 63 87 72 42 113 INFO: Distances between consecutive points are 33 41 40 35 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 59 85 91 91 84 60 65 87 71 40 111 INFO: Distances between consecutive points are 33 41 41 36 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 112 67 85 83 91 84 64 57 86 77 39 111 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 115 59 84 90 91 83 62 62 87 73 39 111 INFO: Distances between consecutive points are 35 41 41 35 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 64 86 88 90 83 63 61 88 77 39 114 INFO: Distances between consecutive points are 37 40 39 37 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 104 117 60 88 92 90 83 60 66 92 79 41 103 INFO: Distances between consecutive points are 36 39 41 33 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 63 87 77 37 110 INFO: Distances between consecutive points are 35 39 40 38 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 85 84 91 84 64 58 86 78 39 112 INFO: Distances between consecutive points are 35 38 39 35 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 60 88 80 41 111 INFO: Distances between consecutive points are 34 38 40 34 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 64 87 71 40 111 INFO: Distances between consecutive points are 32 42 43 36 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 37 105 117 62 89 91 90 83 60 67 92 77 41 103 INFO: Distances between consecutive points are 35 39 40 33 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 90 90 83 63 63 87 78 38 112 INFO: Distances between consecutive points are 35 40 38 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 60 85 89 90 85 60 61 87 72 42 113 INFO: Distances between consecutive points are 35 40 41 34 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 105 115 61 87 88 92 85 62 62 89 70 36 100 INFO: Distances between consecutive points are 33 41 40 29 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 59 88 96 88 84 63 71 88 71 38 97 INFO: Distances between consecutive points are 36 36 37 35 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 58 85 88 90 85 60 61 87 71 41 113 INFO: Distances between consecutive points are 34 42 40 35 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 107 115 60 87 90 91 85 62 63 91 78 41 110 INFO: Distances between consecutive points are 35 40 40 33 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 152 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 43 108 113 62 86 88 93 84 63 62 89 80 42 112 INFO: Distances between consecutive points are 34 40 40 35 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 108 114 62 88 88 91 85 62 61 90 78 42 110 INFO: Distances between consecutive points are 35 39 40 32 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 66 85 85 92 84 63 59 87 75 39 107 INFO: Distances between consecutive points are 35 38 40 31 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 112 67 85 83 91 84 64 57 86 77 39 110 INFO: Distances between consecutive points are 35 38 39 33 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 42 112 118 61 89 91 89 84 62 63 88 78 39 114 INFO: Distances between consecutive points are 33 39 39 39 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 35 99 117 60 86 92 91 84 60 66 87 70 39 106 INFO: Distances between consecutive points are 32 40 41 34 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 100 114 63 84 86 90 85 61 60 87 72 39 115 INFO: Distances between consecutive points are 33 39 39 37 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 105 117 60 88 92 90 83 60 68 92 79 41 104 INFO: Distances between consecutive points are 36 39 40 35 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 104 117 62 89 90 91 83 59 65 92 79 42 103 INFO: Distances between consecutive points are 36 40 41 32 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 34 101 114 58 85 93 90 85 64 65 89 76 38 109 INFO: Distances between consecutive points are 31 38 38 36 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 35 99 117 60 86 93 91 85 60 67 87 69 38 106 INFO: Distances between consecutive points are 31 39 41 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 102 117 57 85 94 91 85 61 68 87 70 39 106 INFO: Distances between consecutive points are 31 41 40 36 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 34 99 117 61 86 91 91 84 60 65 87 70 39 107 INFO: Distances between consecutive points are 33 40 41 34 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 42 107 112 65 86 84 91 84 64 59 86 78 40 111 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 41 115 116 56 87 98 88 84 64 73 88 71 38 97 INFO: Distances between consecutive points are 35 37 37 37 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 100 114 62 84 88 90 84 62 60 87 73 42 112 INFO: Distances between consecutive points are 35 38 40 33 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 90 89 84 64 62 88 79 39 114 INFO: Distances between consecutive points are 34 39 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 60 87 96 90 84 64 72 87 72 38 97 INFO: Distances between consecutive points are 34 37 37 36 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 89 89 83 64 60 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 36 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 106 113 63 87 87 92 84 62 63 89 70 36 100 INFO: Distances between consecutive points are 33 39 39 30 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 107 113 64 87 87 91 84 62 61 89 70 36 100 INFO: Distances between consecutive points are 34 38 39 28 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 42 107 113 62 86 89 92 84 62 65 90 70 36 100 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 116 57 88 98 88 84 66 74 86 72 38 97 INFO: Distances between consecutive points are 34 36 35 38 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 88 77 38 106 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 112 67 85 82 90 84 65 57 84 78 39 112 INFO: Distances between consecutive points are 34 38 37 36 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 61 84 89 90 84 62 64 87 72 40 111 INFO: Distances between consecutive points are 35 38 38 35 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 118 63 89 93 90 84 62 69 88 71 37 97 INFO: Distances between consecutive points are 31 37 38 34 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 41 106 112 66 87 85 91 84 63 59 89 79 41 110 INFO: Distances between consecutive points are 34 37 39 32 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 86 85 92 84 63 60 87 77 38 106 INFO: Distances between consecutive points are 35 38 39 32 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 106 114 63 89 89 92 85 62 66 91 70 36 100 INFO: Distances between consecutive points are 33 38 38 32 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 93 113 68 87 86 91 85 60 60 86 72 38 112 INFO: Distances between consecutive points are 32 36 40 36 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 107 113 64 89 87 91 85 62 61 90 78 41 110 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 43 107 118 61 88 95 89 84 63 72 88 71 37 97 INFO: Distances between consecutive points are 29 36 36 37 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 65 86 87 93 84 63 62 87 77 37 105 INFO: Distances between consecutive points are 34 38 39 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 60 85 92 88 83 60 68 85 72 35 102 INFO: Distances between consecutive points are 35 40 38 39 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 60 88 91 89 84 64 61 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 37 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 63 86 89 88 83 62 63 85 75 35 108 INFO: Distances between consecutive points are 37 40 37 38 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 65 85 74 35 106 INFO: Distances between consecutive points are 36 40 37 39 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 32 101 114 59 83 90 91 84 62 62 87 72 40 111 INFO: Distances between consecutive points are 35 40 40 34 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 65 86 86 92 84 63 62 88 77 38 108 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 64 86 89 93 83 64 66 90 71 36 100 INFO: Distances between consecutive points are 34 38 37 32 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 61 86 91 88 83 61 67 85 74 35 106 INFO: Distances between consecutive points are 35 40 37 40 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 62 88 89 91 84 64 63 87 75 34 104 INFO: Distances between consecutive points are 35 39 38 35 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 87 77 38 106 INFO: Distances between consecutive points are 34 38 39 33 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 38 111 119 61 87 91 90 83 59 67 86 71 35 102 INFO: Distances between consecutive points are 38 41 40 38 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 59 85 92 88 82 63 66 84 75 35 106 INFO: Distances between consecutive points are 39 38 36 40 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 62 84 88 90 84 61 62 87 72 41 110 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 78 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 59 88 96 89 84 63 72 88 71 38 97 INFO: Distances between consecutive points are 33 37 37 36 WARN: Could not find satisfactory control point fit - try 79 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 60 85 90 90 82 64 63 87 77 38 110 INFO: Distances between consecutive points are 39 40 38 36 WARN: Could not find satisfactory control point fit - try 80 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 82 90 84 64 59 85 79 40 110 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 81 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 83 90 84 64 59 85 80 42 111 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 82 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 114 58 83 91 90 84 63 65 87 73 42 113 INFO: Distances between consecutive points are 34 39 38 36 WARN: Could not find satisfactory control point fit - try 83 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 59 83 90 90 84 62 60 87 73 42 113 INFO: Distances between consecutive points are 34 39 41 33 WARN: Could not find satisfactory control point fit - try 84 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 58 85 93 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 39 38 37 41 WARN: Could not find satisfactory control point fit - try 85 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 73 38 111 INFO: Distances between consecutive points are 32 36 38 35 WARN: Could not find satisfactory control point fit - try 86 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 64 85 75 35 108 INFO: Distances between consecutive points are 36 40 38 40 WARN: Could not find satisfactory control point fit - try 87 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 58 85 94 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 38 37 37 41 WARN: Could not find satisfactory control point fit - try 88 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 93 88 83 62 69 85 76 37 104 INFO: Distances between consecutive points are 34 38 36 40 WARN: Could not find satisfactory control point fit - try 89 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 36 100 117 62 86 92 91 86 62 67 89 78 41 107 INFO: Distances between consecutive points are 33 38 39 35 WARN: Could not find satisfactory control point fit - try 90 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 113 116 57 88 97 88 84 65 73 87 71 38 97 INFO: Distances between consecutive points are 32 37 35 37 WARN: Could not find satisfactory control point fit - try 91 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 95 88 83 62 70 85 75 36 105 INFO: Distances between consecutive points are 34 37 38 42 WARN: Could not find satisfactory control point fit - try 92 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 117 62 86 94 90 83 64 72 87 72 40 96 INFO: Distances between consecutive points are 31 36 35 34 WARN: Could not find satisfactory control point fit - try 93 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 62 88 90 89 84 64 65 87 74 33 101 INFO: Distances between consecutive points are 35 36 36 36 WARN: Could not find satisfactory control point fit - try 94 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 37 103 114 68 86 85 91 84 64 62 86 74 33 101 INFO: Distances between consecutive points are 36 37 36 34 WARN: Could not find satisfactory control point fit - try 95 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 59 85 93 89 81 63 68 84 76 35 106 INFO: Distances between consecutive points are 39 38 37 42 WARN: Could not find satisfactory control point fit - try 96 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 60 84 92 90 82 64 66 86 77 38 110 INFO: Distances between consecutive points are 36 39 37 39 WARN: Could not find satisfactory control point fit - try 97 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 106 120 64 87 89 90 84 59 67 85 71 35 102 INFO: Distances between consecutive points are 35 41 38 38 WARN: Could not find satisfactory control point fit - try 98 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 99 114 61 81 89 91 83 62 61 86 74 40 112 INFO: Distances between consecutive points are 36 39 40 36 WARN: Could not find satisfactory control point fit - try 99 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 92 111 69 84 83 89 85 61 59 86 72 39 112 INFO: Distances between consecutive points are 32 34 37 35 WARN: Could not find satisfactory control point fit - try 100 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 2212.85 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 839 streamlines for straying off mask INFO: Rejected 304 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119) Processing pathway 8 of 18... Matching streamline ends INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119) INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 67506 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 98 193 75 108 164 69 88 150 75 73 168 69 83 193 81 INFO: Distances between consecutive points are 31 25 24 29 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 57.864 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 83 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 47 streamlines as length outliers INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 42884 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 107 187 71 113 167 73 111 158 74 107 138 80 95 113 81 INFO: Distances between consecutive points are 21 9 21 28 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 9.28 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 38520 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 69 194 85 71 186 82 68 157 78 81 115 78 82 111 78 INFO: Distances between consecutive points are 9 29 44 4 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.144 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 3 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134) INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7) INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20097 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 74 96 101 81 101 96 112 105 97 139 100 97 163 79 INFO: Distances between consecutive points are 9 32 27 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.013 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2) INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18871 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 82 98 81 98 104 83 128 104 82 160 90 86 164 93 INFO: Distances between consecutive points are 17 30 35 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 6.164 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 52 streamlines for straying off mask INFO: Rejected 62 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92) INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12) INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5) INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17882 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 104 74 79 105 85 70 114 106 49 117 118 44 118 133 39 INFO: Distances between consecutive points are 14 31 13 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 4.921 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 491 streamlines for straying off mask INFO: Rejected 76 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99) INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 15900 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 74 76 85 65 107 47 61 115 43 61 119 42 64 128 39 INFO: Distances between consecutive points are 50 10 4 10 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 3.905 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 181 streamlines for straying off mask INFO: Rejected 652 streamlines for reversing direction INFO: Rejected 40 streamlines as length outliers INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103) INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3) INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 150 131 96 134 121 97 128 98 103 131 85 104 146 86 115 INFO: Distances between consecutive points are 19 25 13 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 7.66 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 311 streamlines for straying off mask INFO: Rejected 458 streamlines for reversing direction INFO: Rejected 95 streamlines as length outliers INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3) INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 65106 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 31 133 95 50 121 100 53 100 105 53 83 102 42 73 113 INFO: Distances between consecutive points are 23 22 17 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 16.605 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 353 streamlines for straying off mask INFO: Rejected 59 streamlines for reversing direction INFO: Rejected 77 streamlines as length outliers INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45630 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 135 97 130 120 98 125 87 98 135 80 70 149 73 70 INFO: Distances between consecutive points are 23 33 31 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.592 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132) INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31157 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 139 102 52 127 99 55 93 101 46 81 79 29 71 78 INFO: Distances between consecutive points are 23 34 27 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.246 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
New invocation of trac-all
Tue Aug 6 08:19:08 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 6936780 58966460 0 372776 5055680 -/+ buffers/cache: 1508324 64394916 Swap: 67032060 1816772 65215288
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 139 102 52 127 99 55 93 101 46 81 79 29 71 78 INFO: Distances between consecutive points are 23 34 27 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.246 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
New invocation of trac-all
Tue Aug 6 08:19:08 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 6936780 58966460 0 372776 5055680 -/+ buffers/cache: 1508324 64394916 Swap: 67032060 1816772 65215288
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
http://www1.imperial.ac.uk/medicine/people/d.soto/
From: Anastasia Yendiki [ayendiki@nmr.mgh.harvard.edu] Sent: 06 August 2013 14:30 To: Soto, David Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] trac-all inquiry
Hi David - Can you please send your entire log file (from scripts/trac-all.log)? It's hard to tell what caused the errors without looking at the whole thing.
Thanks, a.y
On Tue, 6 Aug 2013, Soto, David wrote:
thanks Anastasia, I have some problems however- could you help please?
as said, I am not using the DICOMS, my diffusion data has been converted to nii and then to mnc my config file mostly accepts the defaults, and is simple as follows. There is a folder 'diffree' which contains the dmri config file, the becs and bvals and the mnc difffusion file $$$$$$$$ setenv SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui set dtroot = /home/dsoto/Documents/fmri/rsdtianawmgui set subjlist = (02ST) set runlist = (1) set dcmroot = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree set dcmlist = (diffdata.mnc) set bvecfile = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t set bvalfile = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t set mnitemp = /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain $$$$$$$$
When i run trac-all -c tracula02ST.txt -prep I get some errors such as
- fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
Image Exception : #22 :: ERROR: Could not open image
/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' Abort (core dumped)
convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix
Intriguinly, the script completes with the message
trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
HOWEVER, when I attempt the next step trac-all -c tracula02ST.txt -bedp it aborts saying "/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found"
I am running FSL 5.0.4 under Ubuntu 12.04
cheers ds
http://www1.imperial.ac.uk/medicine/people/d.soto/
From: Anastasia Yendiki [ayendiki@nmr.mgh.harvard.edu] Sent: 02 August 2013 19:15 To: Soto, David Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] trac-all inquiry
Hi David - You need to run each of the steps (-prep, -bedp, -path) separately. You can't run them all at the same time. See tutorial: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/RunningTracula
Hope this helps, a.y
On Fri, 2 Aug 2013, David Soto wrote:
Hi,
I have successfully run recon-all in my dataset and now am attempting to use trac-all on my diffusion data obtained on a Siemens scanner.
Diffusion dicoms were transformed to .nii using MRIConverter and then to .mnc using
nii2mnc output.nii output_t.mnc.
I am trying to run trac-all on a single subject and for this I have created the configuration file attached (tracula02ST)
As you can see the SUBJECTS_DIR is /home/dsoto/Documents/fmri/rsdtianawmgui and within each subject the T1 serving as input for recon-all are in mri/orig
while the diffusion images are in a folder call diffdata (named output_t.mnc) which also contains the bvecs and bvals files, which were transposed and organised according to the tutorial (named as bvecs_t.txt and bvals_t.txt)
When I run: trac-all -c tracula02ST.txt
I get: ERROR: no analysis step (-{prep,bedp,path}) has been selected
THEN I run: trac-all -prep -bedp -path -c tracula02ST.txt which runs for 5 seconds or so and then gives the long output text below with an error message.
Segmentation fault (core dumped) foreach: No match.
The trac-all.log is attached also.
Could you please help?
Cheers
David
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It looks like the error has to do with finding the b=0 frames in the DWI series. Can you attach you b-value table?
On Tue, 6 Aug 2013, Soto, David wrote:
apologies, the trac-all.log sent was for a prior attempt I did with a nii version of the diffusion data which did not work either I converted then to mnc, and the log is this -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 7003456 58899784 0 391760 5063564 -/+ buffers/cache: 1548132 64355108 Swap: 67032060 1791716 65240344
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 7004712 58898528 0 391760 5063564 -/+ buffers/cache: 1549388 64353852 Swap: 67032060 1791716 65240344
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 16:28:18 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, 1) k_ras = (-0, -1, -0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LSP INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 16:30:24 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- http://www1.imperial.ac.uk/medicine/people/d.soto/
From: Anastasia Yendiki [ayendiki@nmr.mgh.harvard.edu] Sent: 06 August 2013 16:17 To: Soto, David Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] trac-all inquiry
The first error is: niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
Does this file exist?
On Tue, 6 Aug 2013, Soto, David wrote:
here it is - thanks! dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log Tue Aug 6 01:57:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980064 59923176 0 83692 4482000 -/+ buffers/cache: 1414372 64488868 Swap: 67032060 1824148 65207912
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980856 59922384 0 83692 4482000 -/+ buffers/cache: 1415164 64488076 Swap: 67032060 1824148 65207912
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:00:22 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5982784 59920456 0 83932 4482156 -/+ buffers/cache: 1416696 64486544 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984932 59918308 0 83932 4482156 -/+ buffers/cache: 1418844 64484396 Swap: 67032060 1824120 65207940
New invocation of trac-all
Tue Aug 6 02:00:32 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5983252 59919988 0 83956 4482156 -/+ buffers/cache: 1417140 64486100 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984752 59918488 0 83956 4482156 -/+ buffers/cache: 1418640 64484600 Swap: 67032060 1824120 65207940
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:01:42 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984044 59919196 0 84144 4482192 -/+ buffers/cache: 1417708 64485532 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987064 59916176 0 84144 4482192 -/+ buffers/cache: 1420728 64482512 Swap: 67032060 1824104 65207956
New invocation of trac-all
Tue Aug 6 02:01:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5985300 59917940 0 84160 4482188 -/+ buffers/cache: 1418952 64484288 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986324 59916916 0 84160 4482188 -/+ buffers/cache: 1419976 64483264 Swap: 67032060 1824104 65207956
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:01:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:02:48 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984700 59918540 0 84336 4482212 -/+ buffers/cache: 1418152 64485088 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987120 59916120 0 84336 4482216 -/+ buffers/cache: 1420568 64482672 Swap: 67032060 1824076 65207984
New invocation of trac-all
Tue Aug 6 02:02:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986420 59916820 0 84348 4482212 -/+ buffers/cache: 1419860 64483380 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5988520 59914720 0 84348 4482212 -/+ buffers/cache: 1421960 64481280 Swap: 67032060 1824076 65207984
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:04:33 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142
New invocation of trac-all
Tue Aug 6 02:09:35 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5990572 59912668 0 85028 4482988 -/+ buffers/cache: 1422556 64480684 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5992728 59910512 0 85028 4482988 -/+ buffers/cache: 1424712 64478528 Swap: 67032060 1824048 65208012
New invocation of trac-all
Tue Aug 6 02:11:25 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5989716 59913524 0 85072 4482980 -/+ buffers/cache: 1421664 64481576 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5991732 59911508 0 85072 4482980 -/+ buffers/cache: 1423680 64479560 Swap: 67032060 1824048 65208012
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:11:26 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, 1) k_ras = (-0, -1, -0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LSP INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:15:07 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 6 clusters 0 k 4.000000 1 k 1038.000000 2 k 3.000000 3 k 1.000000 4 k 2.000000 5 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 12.000000 2 k 1.000000 3 k 1.000000 4 k 1038.000000 Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 458567 values in range Counting number of voxels Found 458567 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 737102 values in range Counting number of voxels Found 737102 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 19373 values in range Counting number of voxels Found 19373 voxels in final mask mri_binarize done fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt #------------------------------------- #@# Tensor fit Tue Aug 6 02:18:26 BST 2013 dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask terminate called after throwing an instance of 'RBD_COMMON::BaseException' #------------------------------------- #@# Priors Tue Aug 6 02:18:26 BST 2013 /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP!
_!
roi2.flt .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP..flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/!
lh!
.ccg_PP_ roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt Training subject directory list: /tmp/subj33.02ST.15264.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 0 Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 572 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132) INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12) INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7) INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 39274 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 94 26 102 105 55 113 110 78 115 106 116 115 107 138 INFO: Distances between consecutive points are 32 26 38 22 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 17.678 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 441 streamlines for straying off mask INFO: Rejected 92 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7) INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 46198 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 92 30 77 104 62 65 110 82 66 107 112 71 110 143 INFO: Distances between consecutive points are 34 24 30 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 19.176 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 19 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142) INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9) INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5) INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 39318 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 130 139 35 134 104 58 130 83 68 116 50 72 109 35 60 INFO: Distances between consecutive points are 42 24 36 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 10.382 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133) INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28709 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 44 144 40 48 100 60 50 84 67 68 53 76 76 41 64 INFO: Distances between consecutive points are 48 18 37 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 11.356 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 67 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104) INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5) INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23343 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 124 144 40 128 128 47 125 126 59 109 151 62 107 168 58 INFO: Distances between consecutive points are 18 13 30 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 6.691 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 107 streamlines for straying off mask INFO: Rejected 120 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113) INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 26122 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 52 145 44 53 129 49 59 133 59 73 153 61 76 175 55 INFO: Distances between consecutive points are 17 12 24 23 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 8.203 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 2655 streamlines for straying off mask INFO: Rejected 231 streamlines for reversing direction INFO: Rejected 155 streamlines as length outliers INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166) INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 59210 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 116 58 86 91 91 84 62 64 87 72 38 111 INFO: Distances between consecutive points are 33 41 40 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 108 116 58 86 90 91 84 60 62 86 72 38 112 INFO: Distances between consecutive points are 34 42 42 37 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 61 86 89 91 84 61 60 86 72 39 112 INFO: Distances between consecutive points are 35 40 42 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 55 86 93 90 84 61 64 87 72 38 112 INFO: Distances between consecutive points are 35 42 41 38 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 56 86 93 90 84 61 65 87 72 38 112 INFO: Distances between consecutive points are 35 41 41 38 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 39 107 115 57 85 91 90 84 61 62 87 72 38 112 INFO: Distances between consecutive points are 34 41 41 36 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 115 60 86 88 90 85 61 59 86 72 39 115 INFO: Distances between consecutive points are 34 40 41 37 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 64 87 76 38 112 INFO: Distances between consecutive points are 35 39 39 39 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 114 61 85 89 90 84 61 63 87 71 40 111 INFO: Distances between consecutive points are 32 38 39 35 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 34 102 117 57 85 92 91 84 60 63 87 72 42 113 INFO: Distances between consecutive points are 31 42 43 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 65 87 72 43 113 INFO: Distances between consecutive points are 32 42 42 36 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 57 85 91 90 84 61 63 87 72 42 113 INFO: Distances between consecutive points are 33 41 40 35 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 59 85 91 91 84 60 65 87 71 40 111 INFO: Distances between consecutive points are 33 41 41 36 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 112 67 85 83 91 84 64 57 86 77 39 111 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 115 59 84 90 91 83 62 62 87 73 39 111 INFO: Distances between consecutive points are 35 41 41 35 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 64 86 88 90 83 63 61 88 77 39 114 INFO: Distances between consecutive points are 37 40 39 37 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 104 117 60 88 92 90 83 60 66 92 79 41 103 INFO: Distances between consecutive points are 36 39 41 33 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 63 87 77 37 110 INFO: Distances between consecutive points are 35 39 40 38 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 85 84 91 84 64 58 86 78 39 112 INFO: Distances between consecutive points are 35 38 39 35 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 60 88 80 41 111 INFO: Distances between consecutive points are 34 38 40 34 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 64 87 71 40 111 INFO: Distances between consecutive points are 32 42 43 36 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 37 105 117 62 89 91 90 83 60 67 92 77 41 103 INFO: Distances between consecutive points are 35 39 40 33 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 90 90 83 63 63 87 78 38 112 INFO: Distances between consecutive points are 35 40 38 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 60 85 89 90 85 60 61 87 72 42 113 INFO: Distances between consecutive points are 35 40 41 34 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 105 115 61 87 88 92 85 62 62 89 70 36 100 INFO: Distances between consecutive points are 33 41 40 29 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 59 88 96 88 84 63 71 88 71 38 97 INFO: Distances between consecutive points are 36 36 37 35 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 58 85 88 90 85 60 61 87 71 41 113 INFO: Distances between consecutive points are 34 42 40 35 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 107 115 60 87 90 91 85 62 63 91 78 41 110 INFO: Distances between consecutive points are 35 40 40 33 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 152 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 43 108 113 62 86 88 93 84 63 62 89 80 42 112 INFO: Distances between consecutive points are 34 40 40 35 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 108 114 62 88 88 91 85 62 61 90 78 42 110 INFO: Distances between consecutive points are 35 39 40 32 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 66 85 85 92 84 63 59 87 75 39 107 INFO: Distances between consecutive points are 35 38 40 31 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 112 67 85 83 91 84 64 57 86 77 39 110 INFO: Distances between consecutive points are 35 38 39 33 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 42 112 118 61 89 91 89 84 62 63 88 78 39 114 INFO: Distances between consecutive points are 33 39 39 39 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 35 99 117 60 86 92 91 84 60 66 87 70 39 106 INFO: Distances between consecutive points are 32 40 41 34 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 100 114 63 84 86 90 85 61 60 87 72 39 115 INFO: Distances between consecutive points are 33 39 39 37 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 105 117 60 88 92 90 83 60 68 92 79 41 104 INFO: Distances between consecutive points are 36 39 40 35 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 104 117 62 89 90 91 83 59 65 92 79 42 103 INFO: Distances between consecutive points are 36 40 41 32 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 34 101 114 58 85 93 90 85 64 65 89 76 38 109 INFO: Distances between consecutive points are 31 38 38 36 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 35 99 117 60 86 93 91 85 60 67 87 69 38 106 INFO: Distances between consecutive points are 31 39 41 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 102 117 57 85 94 91 85 61 68 87 70 39 106 INFO: Distances between consecutive points are 31 41 40 36 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 34 99 117 61 86 91 91 84 60 65 87 70 39 107 INFO: Distances between consecutive points are 33 40 41 34 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 42 107 112 65 86 84 91 84 64 59 86 78 40 111 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 41 115 116 56 87 98 88 84 64 73 88 71 38 97 INFO: Distances between consecutive points are 35 37 37 37 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 100 114 62 84 88 90 84 62 60 87 73 42 112 INFO: Distances between consecutive points are 35 38 40 33 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 90 89 84 64 62 88 79 39 114 INFO: Distances between consecutive points are 34 39 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 60 87 96 90 84 64 72 87 72 38 97 INFO: Distances between consecutive points are 34 37 37 36 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 89 89 83 64 60 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 36 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 106 113 63 87 87 92 84 62 63 89 70 36 100 INFO: Distances between consecutive points are 33 39 39 30 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 107 113 64 87 87 91 84 62 61 89 70 36 100 INFO: Distances between consecutive points are 34 38 39 28 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 42 107 113 62 86 89 92 84 62 65 90 70 36 100 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 116 57 88 98 88 84 66 74 86 72 38 97 INFO: Distances between consecutive points are 34 36 35 38 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 88 77 38 106 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 112 67 85 82 90 84 65 57 84 78 39 112 INFO: Distances between consecutive points are 34 38 37 36 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 61 84 89 90 84 62 64 87 72 40 111 INFO: Distances between consecutive points are 35 38 38 35 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 118 63 89 93 90 84 62 69 88 71 37 97 INFO: Distances between consecutive points are 31 37 38 34 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 41 106 112 66 87 85 91 84 63 59 89 79 41 110 INFO: Distances between consecutive points are 34 37 39 32 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 86 85 92 84 63 60 87 77 38 106 INFO: Distances between consecutive points are 35 38 39 32 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 106 114 63 89 89 92 85 62 66 91 70 36 100 INFO: Distances between consecutive points are 33 38 38 32 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 93 113 68 87 86 91 85 60 60 86 72 38 112 INFO: Distances between consecutive points are 32 36 40 36 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 107 113 64 89 87 91 85 62 61 90 78 41 110 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 43 107 118 61 88 95 89 84 63 72 88 71 37 97 INFO: Distances between consecutive points are 29 36 36 37 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 65 86 87 93 84 63 62 87 77 37 105 INFO: Distances between consecutive points are 34 38 39 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 60 85 92 88 83 60 68 85 72 35 102 INFO: Distances between consecutive points are 35 40 38 39 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 60 88 91 89 84 64 61 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 37 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 63 86 89 88 83 62 63 85 75 35 108 INFO: Distances between consecutive points are 37 40 37 38 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 65 85 74 35 106 INFO: Distances between consecutive points are 36 40 37 39 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 32 101 114 59 83 90 91 84 62 62 87 72 40 111 INFO: Distances between consecutive points are 35 40 40 34 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 65 86 86 92 84 63 62 88 77 38 108 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 64 86 89 93 83 64 66 90 71 36 100 INFO: Distances between consecutive points are 34 38 37 32 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 61 86 91 88 83 61 67 85 74 35 106 INFO: Distances between consecutive points are 35 40 37 40 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 62 88 89 91 84 64 63 87 75 34 104 INFO: Distances between consecutive points are 35 39 38 35 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 87 77 38 106 INFO: Distances between consecutive points are 34 38 39 33 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 38 111 119 61 87 91 90 83 59 67 86 71 35 102 INFO: Distances between consecutive points are 38 41 40 38 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 59 85 92 88 82 63 66 84 75 35 106 INFO: Distances between consecutive points are 39 38 36 40 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 62 84 88 90 84 61 62 87 72 41 110 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 78 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 59 88 96 89 84 63 72 88 71 38 97 INFO: Distances between consecutive points are 33 37 37 36 WARN: Could not find satisfactory control point fit - try 79 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 60 85 90 90 82 64 63 87 77 38 110 INFO: Distances between consecutive points are 39 40 38 36 WARN: Could not find satisfactory control point fit - try 80 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 82 90 84 64 59 85 79 40 110 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 81 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 83 90 84 64 59 85 80 42 111 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 82 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 114 58 83 91 90 84 63 65 87 73 42 113 INFO: Distances between consecutive points are 34 39 38 36 WARN: Could not find satisfactory control point fit - try 83 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 59 83 90 90 84 62 60 87 73 42 113 INFO: Distances between consecutive points are 34 39 41 33 WARN: Could not find satisfactory control point fit - try 84 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 58 85 93 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 39 38 37 41 WARN: Could not find satisfactory control point fit - try 85 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 73 38 111 INFO: Distances between consecutive points are 32 36 38 35 WARN: Could not find satisfactory control point fit - try 86 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 64 85 75 35 108 INFO: Distances between consecutive points are 36 40 38 40 WARN: Could not find satisfactory control point fit - try 87 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 58 85 94 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 38 37 37 41 WARN: Could not find satisfactory control point fit - try 88 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 93 88 83 62 69 85 76 37 104 INFO: Distances between consecutive points are 34 38 36 40 WARN: Could not find satisfactory control point fit - try 89 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 36 100 117 62 86 92 91 86 62 67 89 78 41 107 INFO: Distances between consecutive points are 33 38 39 35 WARN: Could not find satisfactory control point fit - try 90 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 113 116 57 88 97 88 84 65 73 87 71 38 97 INFO: Distances between consecutive points are 32 37 35 37 WARN: Could not find satisfactory control point fit - try 91 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 95 88 83 62 70 85 75 36 105 INFO: Distances between consecutive points are 34 37 38 42 WARN: Could not find satisfactory control point fit - try 92 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 117 62 86 94 90 83 64 72 87 72 40 96 INFO: Distances between consecutive points are 31 36 35 34 WARN: Could not find satisfactory control point fit - try 93 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 62 88 90 89 84 64 65 87 74 33 101 INFO: Distances between consecutive points are 35 36 36 36 WARN: Could not find satisfactory control point fit - try 94 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 37 103 114 68 86 85 91 84 64 62 86 74 33 101 INFO: Distances between consecutive points are 36 37 36 34 WARN: Could not find satisfactory control point fit - try 95 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 59 85 93 89 81 63 68 84 76 35 106 INFO: Distances between consecutive points are 39 38 37 42 WARN: Could not find satisfactory control point fit - try 96 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 60 84 92 90 82 64 66 86 77 38 110 INFO: Distances between consecutive points are 36 39 37 39 WARN: Could not find satisfactory control point fit - try 97 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 106 120 64 87 89 90 84 59 67 85 71 35 102 INFO: Distances between consecutive points are 35 41 38 38 WARN: Could not find satisfactory control point fit - try 98 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 99 114 61 81 89 91 83 62 61 86 74 40 112 INFO: Distances between consecutive points are 36 39 40 36 WARN: Could not find satisfactory control point fit - try 99 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 92 111 69 84 83 89 85 61 59 86 72 39 112 INFO: Distances between consecutive points are 32 34 37 35 WARN: Could not find satisfactory control point fit - try 100 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 2212.85 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 839 streamlines for straying off mask INFO: Rejected 304 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119) Processing pathway 8 of 18... Matching streamline ends INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119) INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 67506 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 98 193 75 108 164 69 88 150 75 73 168 69 83 193 81 INFO: Distances between consecutive points are 31 25 24 29 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 57.864 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 83 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 47 streamlines as length outliers INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 42884 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 107 187 71 113 167 73 111 158 74 107 138 80 95 113 81 INFO: Distances between consecutive points are 21 9 21 28 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 9.28 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from 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Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 38520 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 69 194 85 71 186 82 68 157 78 81 115 78 82 111 78 INFO: Distances between consecutive points are 9 29 44 4 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.144 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 3 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134) INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7) INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20097 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 74 96 101 81 101 96 112 105 97 139 100 97 163 79 INFO: Distances between consecutive points are 9 32 27 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.013 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2) INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18871 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 82 98 81 98 104 83 128 104 82 160 90 86 164 93 INFO: Distances between consecutive points are 17 30 35 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 6.164 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 52 streamlines for straying off mask INFO: Rejected 62 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92) INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12) INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5) INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17882 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 104 74 79 105 85 70 114 106 49 117 118 44 118 133 39 INFO: Distances between consecutive points are 14 31 13 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 4.921 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 491 streamlines for straying off mask INFO: Rejected 76 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99) INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 15900 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 74 76 85 65 107 47 61 115 43 61 119 42 64 128 39 INFO: Distances between consecutive points are 50 10 4 10 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 3.905 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 181 streamlines for straying off mask INFO: Rejected 652 streamlines for reversing direction INFO: Rejected 40 streamlines as length outliers INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103) INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3) INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 150 131 96 134 121 97 128 98 103 131 85 104 146 86 115 INFO: Distances between consecutive points are 19 25 13 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 7.66 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 311 streamlines for straying off mask INFO: Rejected 458 streamlines for reversing direction INFO: Rejected 95 streamlines as length outliers INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3) INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 65106 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 31 133 95 50 121 100 53 100 105 53 83 102 42 73 113 INFO: Distances between consecutive points are 23 22 17 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 16.605 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 353 streamlines for straying off mask INFO: Rejected 59 streamlines for reversing direction INFO: Rejected 77 streamlines as length outliers INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45630 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 135 97 130 120 98 125 87 98 135 80 70 149 73 70 INFO: Distances between consecutive points are 23 33 31 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.592 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132) INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31157 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 139 102 52 127 99 55 93 101 46 81 79 29 71 78 INFO: Distances between consecutive points are 23 34 27 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.246 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
New invocation of trac-all
Tue Aug 6 08:19:08 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 6936780 58966460 0 372776 5055680 -/+ buffers/cache: 1508324 64394916 Swap: 67032060 1816772 65215288
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat ^C dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ ^C dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ ^C dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log Tue Aug 6 01:57:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980064 59923176 0 83692 4482000 -/+ buffers/cache: 1414372 64488868 Swap: 67032060 1824148 65207912
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980856 59922384 0 83692 4482000 -/+ buffers/cache: 1415164 64488076 Swap: 67032060 1824148 65207912
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:00:22 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5982784 59920456 0 83932 4482156 -/+ buffers/cache: 1416696 64486544 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984932 59918308 0 83932 4482156 -/+ buffers/cache: 1418844 64484396 Swap: 67032060 1824120 65207940
New invocation of trac-all
Tue Aug 6 02:00:32 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5983252 59919988 0 83956 4482156 -/+ buffers/cache: 1417140 64486100 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984752 59918488 0 83956 4482156 -/+ buffers/cache: 1418640 64484600 Swap: 67032060 1824120 65207940
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:01:42 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984044 59919196 0 84144 4482192 -/+ buffers/cache: 1417708 64485532 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987064 59916176 0 84144 4482192 -/+ buffers/cache: 1420728 64482512 Swap: 67032060 1824104 65207956
New invocation of trac-all
Tue Aug 6 02:01:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5985300 59917940 0 84160 4482188 -/+ buffers/cache: 1418952 64484288 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986324 59916916 0 84160 4482188 -/+ buffers/cache: 1419976 64483264 Swap: 67032060 1824104 65207956
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:01:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:02:48 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984700 59918540 0 84336 4482212 -/+ buffers/cache: 1418152 64485088 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987120 59916120 0 84336 4482216 -/+ buffers/cache: 1420568 64482672 Swap: 67032060 1824076 65207984
New invocation of trac-all
Tue Aug 6 02:02:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986420 59916820 0 84348 4482212 -/+ buffers/cache: 1419860 64483380 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5988520 59914720 0 84348 4482212 -/+ buffers/cache: 1421960 64481280 Swap: 67032060 1824076 65207984
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:04:33 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142
New invocation of trac-all
Tue Aug 6 02:09:35 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5990572 59912668 0 85028 4482988 -/+ buffers/cache: 1422556 64480684 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5992728 59910512 0 85028 4482988 -/+ buffers/cache: 1424712 64478528 Swap: 67032060 1824048 65208012
New invocation of trac-all
Tue Aug 6 02:11:25 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5989716 59913524 0 85072 4482980 -/+ buffers/cache: 1421664 64481576 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5991732 59911508 0 85072 4482980 -/+ buffers/cache: 1423680 64479560 Swap: 67032060 1824048 65208012
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:11:26 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, 1) k_ras = (-0, -1, -0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LSP INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:15:07 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 6 clusters 0 k 4.000000 1 k 1038.000000 2 k 3.000000 3 k 1.000000 4 k 2.000000 5 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 12.000000 2 k 1.000000 3 k 1.000000 4 k 1038.000000 Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 458567 values in range Counting number of voxels Found 458567 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 737102 values in range Counting number of voxels Found 737102 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 19373 values in range Counting number of voxels Found 19373 voxels in final mask mri_binarize done fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt #------------------------------------- #@# Tensor fit Tue Aug 6 02:18:26 BST 2013 dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask terminate called after throwing an instance of 'RBD_COMMON::BaseException' #------------------------------------- #@# Priors Tue Aug 6 02:18:26 BST 2013 /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP!
_!
roi2.flt .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP..flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/!
lh!
.ccg_PP_ roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt Training subject directory list: /tmp/subj33.02ST.15264.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 0 Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 572 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132) INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12) INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7) INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 39274 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 94 26 102 105 55 113 110 78 115 106 116 115 107 138 INFO: Distances between consecutive points are 32 26 38 22 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 17.678 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 441 streamlines for straying off mask INFO: Rejected 92 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7) INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 46198 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 92 30 77 104 62 65 110 82 66 107 112 71 110 143 INFO: Distances between consecutive points are 34 24 30 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 19.176 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 19 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142) INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9) INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5) INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 39318 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 130 139 35 134 104 58 130 83 68 116 50 72 109 35 60 INFO: Distances between consecutive points are 42 24 36 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 10.382 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133) INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28709 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 44 144 40 48 100 60 50 84 67 68 53 76 76 41 64 INFO: Distances between consecutive points are 48 18 37 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 11.356 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 67 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104) INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5) INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23343 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 124 144 40 128 128 47 125 126 59 109 151 62 107 168 58 INFO: Distances between consecutive points are 18 13 30 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 6.691 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 107 streamlines for straying off mask INFO: Rejected 120 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113) INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 26122 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 52 145 44 53 129 49 59 133 59 73 153 61 76 175 55 INFO: Distances between consecutive points are 17 12 24 23 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 8.203 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 2655 streamlines for straying off mask INFO: Rejected 231 streamlines for reversing direction INFO: Rejected 155 streamlines as length outliers INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166) INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 59210 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 116 58 86 91 91 84 62 64 87 72 38 111 INFO: Distances between consecutive points are 33 41 40 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 108 116 58 86 90 91 84 60 62 86 72 38 112 INFO: Distances between consecutive points are 34 42 42 37 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 61 86 89 91 84 61 60 86 72 39 112 INFO: Distances between consecutive points are 35 40 42 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 55 86 93 90 84 61 64 87 72 38 112 INFO: Distances between consecutive points are 35 42 41 38 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 56 86 93 90 84 61 65 87 72 38 112 INFO: Distances between consecutive points are 35 41 41 38 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 39 107 115 57 85 91 90 84 61 62 87 72 38 112 INFO: Distances between consecutive points are 34 41 41 36 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 115 60 86 88 90 85 61 59 86 72 39 115 INFO: Distances between consecutive points are 34 40 41 37 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 64 87 76 38 112 INFO: Distances between consecutive points are 35 39 39 39 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 114 61 85 89 90 84 61 63 87 71 40 111 INFO: Distances between consecutive points are 32 38 39 35 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 34 102 117 57 85 92 91 84 60 63 87 72 42 113 INFO: Distances between consecutive points are 31 42 43 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 65 87 72 43 113 INFO: Distances between consecutive points are 32 42 42 36 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 57 85 91 90 84 61 63 87 72 42 113 INFO: Distances between consecutive points are 33 41 40 35 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 59 85 91 91 84 60 65 87 71 40 111 INFO: Distances between consecutive points are 33 41 41 36 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 112 67 85 83 91 84 64 57 86 77 39 111 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 115 59 84 90 91 83 62 62 87 73 39 111 INFO: Distances between consecutive points are 35 41 41 35 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 64 86 88 90 83 63 61 88 77 39 114 INFO: Distances between consecutive points are 37 40 39 37 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 104 117 60 88 92 90 83 60 66 92 79 41 103 INFO: Distances between consecutive points are 36 39 41 33 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 63 87 77 37 110 INFO: Distances between consecutive points are 35 39 40 38 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 85 84 91 84 64 58 86 78 39 112 INFO: Distances between consecutive points are 35 38 39 35 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 60 88 80 41 111 INFO: Distances between consecutive points are 34 38 40 34 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 64 87 71 40 111 INFO: Distances between consecutive points are 32 42 43 36 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 37 105 117 62 89 91 90 83 60 67 92 77 41 103 INFO: Distances between consecutive points are 35 39 40 33 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 90 90 83 63 63 87 78 38 112 INFO: Distances between consecutive points are 35 40 38 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 60 85 89 90 85 60 61 87 72 42 113 INFO: Distances between consecutive points are 35 40 41 34 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 105 115 61 87 88 92 85 62 62 89 70 36 100 INFO: Distances between consecutive points are 33 41 40 29 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 59 88 96 88 84 63 71 88 71 38 97 INFO: Distances between consecutive points are 36 36 37 35 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 58 85 88 90 85 60 61 87 71 41 113 INFO: Distances between consecutive points are 34 42 40 35 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 107 115 60 87 90 91 85 62 63 91 78 41 110 INFO: Distances between consecutive points are 35 40 40 33 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 152 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 43 108 113 62 86 88 93 84 63 62 89 80 42 112 INFO: Distances between consecutive points are 34 40 40 35 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 108 114 62 88 88 91 85 62 61 90 78 42 110 INFO: Distances between consecutive points are 35 39 40 32 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 66 85 85 92 84 63 59 87 75 39 107 INFO: Distances between consecutive points are 35 38 40 31 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 112 67 85 83 91 84 64 57 86 77 39 110 INFO: Distances between consecutive points are 35 38 39 33 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 42 112 118 61 89 91 89 84 62 63 88 78 39 114 INFO: Distances between consecutive points are 33 39 39 39 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 35 99 117 60 86 92 91 84 60 66 87 70 39 106 INFO: Distances between consecutive points are 32 40 41 34 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 100 114 63 84 86 90 85 61 60 87 72 39 115 INFO: Distances between consecutive points are 33 39 39 37 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 105 117 60 88 92 90 83 60 68 92 79 41 104 INFO: Distances between consecutive points are 36 39 40 35 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 104 117 62 89 90 91 83 59 65 92 79 42 103 INFO: Distances between consecutive points are 36 40 41 32 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 34 101 114 58 85 93 90 85 64 65 89 76 38 109 INFO: Distances between consecutive points are 31 38 38 36 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 35 99 117 60 86 93 91 85 60 67 87 69 38 106 INFO: Distances between consecutive points are 31 39 41 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 102 117 57 85 94 91 85 61 68 87 70 39 106 INFO: Distances between consecutive points are 31 41 40 36 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 34 99 117 61 86 91 91 84 60 65 87 70 39 107 INFO: Distances between consecutive points are 33 40 41 34 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 42 107 112 65 86 84 91 84 64 59 86 78 40 111 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 41 115 116 56 87 98 88 84 64 73 88 71 38 97 INFO: Distances between consecutive points are 35 37 37 37 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 100 114 62 84 88 90 84 62 60 87 73 42 112 INFO: Distances between consecutive points are 35 38 40 33 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 90 89 84 64 62 88 79 39 114 INFO: Distances between consecutive points are 34 39 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 60 87 96 90 84 64 72 87 72 38 97 INFO: Distances between consecutive points are 34 37 37 36 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 89 89 83 64 60 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 36 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 106 113 63 87 87 92 84 62 63 89 70 36 100 INFO: Distances between consecutive points are 33 39 39 30 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 107 113 64 87 87 91 84 62 61 89 70 36 100 INFO: Distances between consecutive points are 34 38 39 28 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 42 107 113 62 86 89 92 84 62 65 90 70 36 100 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 116 57 88 98 88 84 66 74 86 72 38 97 INFO: Distances between consecutive points are 34 36 35 38 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 88 77 38 106 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 112 67 85 82 90 84 65 57 84 78 39 112 INFO: Distances between consecutive points are 34 38 37 36 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 61 84 89 90 84 62 64 87 72 40 111 INFO: Distances between consecutive points are 35 38 38 35 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 118 63 89 93 90 84 62 69 88 71 37 97 INFO: Distances between consecutive points are 31 37 38 34 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 41 106 112 66 87 85 91 84 63 59 89 79 41 110 INFO: Distances between consecutive points are 34 37 39 32 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 86 85 92 84 63 60 87 77 38 106 INFO: Distances between consecutive points are 35 38 39 32 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 106 114 63 89 89 92 85 62 66 91 70 36 100 INFO: Distances between consecutive points are 33 38 38 32 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 93 113 68 87 86 91 85 60 60 86 72 38 112 INFO: Distances between consecutive points are 32 36 40 36 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 107 113 64 89 87 91 85 62 61 90 78 41 110 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 43 107 118 61 88 95 89 84 63 72 88 71 37 97 INFO: Distances between consecutive points are 29 36 36 37 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 65 86 87 93 84 63 62 87 77 37 105 INFO: Distances between consecutive points are 34 38 39 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 60 85 92 88 83 60 68 85 72 35 102 INFO: Distances between consecutive points are 35 40 38 39 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 60 88 91 89 84 64 61 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 37 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 63 86 89 88 83 62 63 85 75 35 108 INFO: Distances between consecutive points are 37 40 37 38 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 65 85 74 35 106 INFO: Distances between consecutive points are 36 40 37 39 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 32 101 114 59 83 90 91 84 62 62 87 72 40 111 INFO: Distances between consecutive points are 35 40 40 34 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 65 86 86 92 84 63 62 88 77 38 108 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 64 86 89 93 83 64 66 90 71 36 100 INFO: Distances between consecutive points are 34 38 37 32 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 61 86 91 88 83 61 67 85 74 35 106 INFO: Distances between consecutive points are 35 40 37 40 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 62 88 89 91 84 64 63 87 75 34 104 INFO: Distances between consecutive points are 35 39 38 35 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 87 77 38 106 INFO: Distances between consecutive points are 34 38 39 33 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 38 111 119 61 87 91 90 83 59 67 86 71 35 102 INFO: Distances between consecutive points are 38 41 40 38 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 59 85 92 88 82 63 66 84 75 35 106 INFO: Distances between consecutive points are 39 38 36 40 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 62 84 88 90 84 61 62 87 72 41 110 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 78 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 59 88 96 89 84 63 72 88 71 38 97 INFO: Distances between consecutive points are 33 37 37 36 WARN: Could not find satisfactory control point fit - try 79 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 60 85 90 90 82 64 63 87 77 38 110 INFO: Distances between consecutive points are 39 40 38 36 WARN: Could not find satisfactory control point fit - try 80 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 82 90 84 64 59 85 79 40 110 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 81 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 83 90 84 64 59 85 80 42 111 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 82 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 114 58 83 91 90 84 63 65 87 73 42 113 INFO: Distances between consecutive points are 34 39 38 36 WARN: Could not find satisfactory control point fit - try 83 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 59 83 90 90 84 62 60 87 73 42 113 INFO: Distances between consecutive points are 34 39 41 33 WARN: Could not find satisfactory control point fit - try 84 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 58 85 93 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 39 38 37 41 WARN: Could not find satisfactory control point fit - try 85 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 73 38 111 INFO: Distances between consecutive points are 32 36 38 35 WARN: Could not find satisfactory control point fit - try 86 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 64 85 75 35 108 INFO: Distances between consecutive points are 36 40 38 40 WARN: Could not find satisfactory control point fit - try 87 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 58 85 94 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 38 37 37 41 WARN: Could not find satisfactory control point fit - try 88 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 93 88 83 62 69 85 76 37 104 INFO: Distances between consecutive points are 34 38 36 40 WARN: Could not find satisfactory control point fit - try 89 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 36 100 117 62 86 92 91 86 62 67 89 78 41 107 INFO: Distances between consecutive points are 33 38 39 35 WARN: Could not find satisfactory control point fit - try 90 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 113 116 57 88 97 88 84 65 73 87 71 38 97 INFO: Distances between consecutive points are 32 37 35 37 WARN: Could not find satisfactory control point fit - try 91 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 95 88 83 62 70 85 75 36 105 INFO: Distances between consecutive points are 34 37 38 42 WARN: Could not find satisfactory control point fit - try 92 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 117 62 86 94 90 83 64 72 87 72 40 96 INFO: Distances between consecutive points are 31 36 35 34 WARN: Could not find satisfactory control point fit - try 93 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 62 88 90 89 84 64 65 87 74 33 101 INFO: Distances between consecutive points are 35 36 36 36 WARN: Could not find satisfactory control point fit - try 94 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 37 103 114 68 86 85 91 84 64 62 86 74 33 101 INFO: Distances between consecutive points are 36 37 36 34 WARN: Could not find satisfactory control point fit - try 95 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 59 85 93 89 81 63 68 84 76 35 106 INFO: Distances between consecutive points are 39 38 37 42 WARN: Could not find satisfactory control point fit - try 96 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 60 84 92 90 82 64 66 86 77 38 110 INFO: Distances between consecutive points are 36 39 37 39 WARN: Could not find satisfactory control point fit - try 97 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 106 120 64 87 89 90 84 59 67 85 71 35 102 INFO: Distances between consecutive points are 35 41 38 38 WARN: Could not find satisfactory control point fit - try 98 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 99 114 61 81 89 91 83 62 61 86 74 40 112 INFO: Distances between consecutive points are 36 39 40 36 WARN: Could not find satisfactory control point fit - try 99 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 92 111 69 84 83 89 85 61 59 86 72 39 112 INFO: Distances between consecutive points are 32 34 37 35 WARN: Could not find satisfactory control point fit - try 100 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 2212.85 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 839 streamlines for straying off mask INFO: Rejected 304 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119) Processing pathway 8 of 18... Matching streamline ends INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119) INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 67506 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 98 193 75 108 164 69 88 150 75 73 168 69 83 193 81 INFO: Distances between consecutive points are 31 25 24 29 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 57.864 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 83 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 47 streamlines as length outliers INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 42884 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 107 187 71 113 167 73 111 158 74 107 138 80 95 113 81 INFO: Distances between consecutive points are 21 9 21 28 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 9.28 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 38520 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 69 194 85 71 186 82 68 157 78 81 115 78 82 111 78 INFO: Distances between consecutive points are 9 29 44 4 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.144 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 3 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134) INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7) INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20097 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 74 96 101 81 101 96 112 105 97 139 100 97 163 79 INFO: Distances between consecutive points are 9 32 27 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.013 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2) INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18871 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 82 98 81 98 104 83 128 104 82 160 90 86 164 93 INFO: Distances between consecutive points are 17 30 35 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 6.164 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 52 streamlines for straying off mask INFO: Rejected 62 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92) INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12) INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5) INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17882 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 104 74 79 105 85 70 114 106 49 117 118 44 118 133 39 INFO: Distances between consecutive points are 14 31 13 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 4.921 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 491 streamlines for straying off mask INFO: Rejected 76 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99) INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 15900 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 74 76 85 65 107 47 61 115 43 61 119 42 64 128 39 INFO: Distances between consecutive points are 50 10 4 10 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 3.905 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 181 streamlines for straying off mask INFO: Rejected 652 streamlines for reversing direction INFO: Rejected 40 streamlines as length outliers INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103) INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3) INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 150 131 96 134 121 97 128 98 103 131 85 104 146 86 115 INFO: Distances between consecutive points are 19 25 13 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 7.66 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 311 streamlines for straying off mask INFO: Rejected 458 streamlines for reversing direction INFO: Rejected 95 streamlines as length outliers INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3) INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 65106 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 31 133 95 50 121 100 53 100 105 53 83 102 42 73 113 INFO: Distances between consecutive points are 23 22 17 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 16.605 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 353 streamlines for straying off mask INFO: Rejected 59 streamlines for reversing direction INFO: Rejected 77 streamlines as length outliers INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45630 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 135 97 130 120 98 125 87 98 135 80 70 149 73 70 INFO: Distances between consecutive points are 23 33 31 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.592 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132) INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31157 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 139 102 52 127 99 55 93 101 46 81 79 29 71 78 INFO: Distances between consecutive points are 23 34 27 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.246 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
New invocation of trac-all
Tue Aug 6 08:19:08 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 6936780 58966460 0 372776 5055680 -/+ buffers/cache: 1508324 64394916 Swap: 67032060 1816772 65215288
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log Tue Aug 6 01:57:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/02ST /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980064 59923176 0 83692 4482000 -/+ buffers/cache: 1414372 64488868 Swap: 67032060 1824148 65207912
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5980856 59922384 0 83692 4482000 -/+ buffers/cache: 1415164 64488076 Swap: 67032060 1824148 65207912
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:00:22 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5982784 59920456 0 83932 4482156 -/+ buffers/cache: 1416696 64486544 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984932 59918308 0 83932 4482156 -/+ buffers/cache: 1418844 64484396 Swap: 67032060 1824120 65207940
New invocation of trac-all
Tue Aug 6 02:00:32 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5983252 59919988 0 83956 4482156 -/+ buffers/cache: 1417140 64486100 Swap: 67032060 1824120 65207940
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984752 59918488 0 83956 4482156 -/+ buffers/cache: 1418640 64484600 Swap: 67032060 1824120 65207940
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:01:42 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984044 59919196 0 84144 4482192 -/+ buffers/cache: 1417708 64485532 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987064 59916176 0 84144 4482192 -/+ buffers/cache: 1420728 64482512 Swap: 67032060 1824104 65207956
New invocation of trac-all
Tue Aug 6 02:01:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5985300 59917940 0 84160 4482188 -/+ buffers/cache: 1418952 64484288 Swap: 67032060 1824104 65207956
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986324 59916916 0 84160 4482188 -/+ buffers/cache: 1419976 64483264 Swap: 67032060 1824104 65207956
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:01:56 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
New invocation of trac-all
Tue Aug 6 02:02:48 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5984700 59918540 0 84336 4482212 -/+ buffers/cache: 1418152 64485088 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5987120 59916120 0 84336 4482216 -/+ buffers/cache: 1420568 64482672 Swap: 67032060 1824076 65207984
New invocation of trac-all
Tue Aug 6 02:02:56 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5986420 59916820 0 84348 4482212 -/+ buffers/cache: 1419860 64483380 Swap: 67032060 1824076 65207984
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5988520 59914720 0 84348 4482212 -/+ buffers/cache: 1421960 64481280 Swap: 67032060 1824076 65207984
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii... No such file or directory cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 Input does not exist or is not in a supported format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory ERROR: Transform file should be an eddy_correct log file or a .mat file fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:04:33 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142
New invocation of trac-all
Tue Aug 6 02:09:35 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5990572 59912668 0 85028 4482988 -/+ buffers/cache: 1422556 64480684 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5992728 59910512 0 85028 4482988 -/+ buffers/cache: 1424712 64478528 Swap: 67032060 1824048 65208012
New invocation of trac-all
Tue Aug 6 02:11:25 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5989716 59913524 0 85072 4482980 -/+ buffers/cache: 1421664 64481576 Swap: 67032060 1824048 65208012
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 5991732 59911508 0 85072 4482980 -/+ buffers/cache: 1423680 64479560 Swap: 67032060 1824048 65208012
#------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Aug 6 02:11:26 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, 1) k_ras = (-0, -1, -0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz... cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LSP INFO: input image determinant is -12.5224 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063 processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064 mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory #------------------------------------- #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013 mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz... flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000;
---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013 flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Aug 6 02:15:07 BST 2013 mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 467858 values in range Counting number of voxels Found 467858 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 494467 values in range Counting number of voxels Found 494467 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7382 values in range Counting number of voxels Found 7382 voxels in final mask mri_binarize done mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui subject 02ST outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0
Reading lh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
Reading lh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Reading rh white surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
Reading rh pial surface /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000;
Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 6 clusters 0 k 4.000000 1 k 1038.000000 2 k 3.000000 3 k 1.000000 4 k 2.000000 5 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 12.000000 2 k 1.000000 3 k 1.000000 4 k 1038.000000 Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 458567 values in range Counting number of voxels Found 458567 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 737102 values in range Counting number of voxels Found 737102 voxels in final mask mri_binarize done mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto
input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 19373 values in range Counting number of voxels Found 19373 voxels in final mask mri_binarize done fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt #------------------------------------- #@# Tensor fit Tue Aug 6 02:18:26 BST 2013 dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask terminate called after throwing an instance of 'RBD_COMMON::BaseException' #------------------------------------- #@# Priors Tue Aug 6 02:18:26 BST 2013 /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP!
_!
roi2.flt .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP..flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/!
lh!
.ccg_PP_ roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
sysname Linux hostname wmen-dsoto3 machine x86_64 user dsoto Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt Training subject directory list: /tmp/subj33.02ST.15264.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 0 Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 572 streamlines for straying off mask INFO: Rejected 89 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132) INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12) INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7) INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 39274 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 94 26 102 105 55 113 110 78 115 106 116 115 107 138 INFO: Distances between consecutive points are 32 26 38 22 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 17.678 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 441 streamlines for straying off mask INFO: Rejected 92 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7) INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 46198 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 92 30 77 104 62 65 110 82 66 107 112 71 110 143 INFO: Distances between consecutive points are 34 24 30 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz Done in 19.176 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 19 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142) INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9) INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5) INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 39318 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 130 139 35 134 104 58 130 83 68 116 50 72 109 35 60 INFO: Distances between consecutive points are 42 24 36 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 10.382 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133) INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28709 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 44 144 40 48 100 60 50 84 67 68 53 76 76 41 64 INFO: Distances between consecutive points are 48 18 37 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz Done in 11.356 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 67 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104) INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5) INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23343 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 124 144 40 128 128 47 125 126 59 109 151 62 107 168 58 INFO: Distances between consecutive points are 18 13 30 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 6.691 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 107 streamlines for straying off mask INFO: Rejected 120 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113) INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 26122 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 52 145 44 53 129 49 59 133 59 73 153 61 76 175 55 INFO: Distances between consecutive points are 17 12 24 23 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz Done in 8.203 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 2655 streamlines for straying off mask INFO: Rejected 231 streamlines for reversing direction INFO: Rejected 155 streamlines as length outliers INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162) Processing pathway 7 of 18... Matching streamline ends INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166) INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 59210 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 116 58 86 91 91 84 62 64 87 72 38 111 INFO: Distances between consecutive points are 33 41 40 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 108 116 58 86 90 91 84 60 62 86 72 38 112 INFO: Distances between consecutive points are 34 42 42 37 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 61 86 89 91 84 61 60 86 72 39 112 INFO: Distances between consecutive points are 35 40 42 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 55 86 93 90 84 61 64 87 72 38 112 INFO: Distances between consecutive points are 35 42 41 38 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 56 86 93 90 84 61 65 87 72 38 112 INFO: Distances between consecutive points are 35 41 41 38 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 39 107 115 57 85 91 90 84 61 62 87 72 38 112 INFO: Distances between consecutive points are 34 41 41 36 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 107 115 60 86 88 90 85 61 59 86 72 39 115 INFO: Distances between consecutive points are 34 40 41 37 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 64 87 76 38 112 INFO: Distances between consecutive points are 35 39 39 39 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 114 61 85 89 90 84 61 63 87 71 40 111 INFO: Distances between consecutive points are 32 38 39 35 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 34 102 117 57 85 92 91 84 60 63 87 72 42 113 INFO: Distances between consecutive points are 31 42 43 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 65 87 72 43 113 INFO: Distances between consecutive points are 32 42 42 36 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 57 85 91 90 84 61 63 87 72 42 113 INFO: Distances between consecutive points are 33 41 40 35 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 59 85 91 91 84 60 65 87 71 40 111 INFO: Distances between consecutive points are 33 41 41 36 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 112 67 85 83 91 84 64 57 86 77 39 111 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 115 59 84 90 91 83 62 62 87 73 39 111 INFO: Distances between consecutive points are 35 41 41 35 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 64 86 88 90 83 63 61 88 77 39 114 INFO: Distances between consecutive points are 37 40 39 37 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 104 117 60 88 92 90 83 60 66 92 79 41 103 INFO: Distances between consecutive points are 36 39 41 33 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 91 90 83 62 63 87 77 37 110 INFO: Distances between consecutive points are 35 39 40 38 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 85 84 91 84 64 58 86 78 39 112 INFO: Distances between consecutive points are 35 38 39 35 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 60 88 80 41 111 INFO: Distances between consecutive points are 34 38 40 34 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 33 102 117 57 85 93 91 84 60 64 87 71 40 111 INFO: Distances between consecutive points are 32 42 43 36 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 37 105 117 62 89 91 90 83 60 67 92 77 41 103 INFO: Distances between consecutive points are 35 39 40 33 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 61 86 90 90 83 63 63 87 78 38 112 INFO: Distances between consecutive points are 35 40 38 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 60 85 89 90 85 60 61 87 72 42 113 INFO: Distances between consecutive points are 35 40 41 34 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 105 115 61 87 88 92 85 62 62 89 70 36 100 INFO: Distances between consecutive points are 33 41 40 29 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 59 88 96 88 84 63 71 88 71 38 97 INFO: Distances between consecutive points are 36 36 37 35 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 107 115 58 85 88 90 85 60 61 87 71 41 113 INFO: Distances between consecutive points are 34 42 40 35 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 107 115 60 87 90 91 85 62 63 91 78 41 110 INFO: Distances between consecutive points are 35 40 40 33 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 152 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 43 108 113 62 86 88 93 84 63 62 89 80 42 112 INFO: Distances between consecutive points are 34 40 40 35 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 108 114 62 88 88 91 85 62 61 90 78 42 110 INFO: Distances between consecutive points are 35 39 40 32 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 66 85 85 92 84 63 59 87 75 39 107 INFO: Distances between consecutive points are 35 38 40 31 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 112 67 85 83 91 84 64 57 86 77 39 110 INFO: Distances between consecutive points are 35 38 39 33 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 42 112 118 61 89 91 89 84 62 63 88 78 39 114 INFO: Distances between consecutive points are 33 39 39 39 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 35 99 117 60 86 92 91 84 60 66 87 70 39 106 INFO: Distances between consecutive points are 32 40 41 34 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 100 114 63 84 86 90 85 61 60 87 72 39 115 INFO: Distances between consecutive points are 33 39 39 37 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 34 105 117 60 88 92 90 83 60 68 92 79 41 104 INFO: Distances between consecutive points are 36 39 40 35 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 104 117 62 89 90 91 83 59 65 92 79 42 103 INFO: Distances between consecutive points are 36 40 41 32 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 34 101 114 58 85 93 90 85 64 65 89 76 38 109 INFO: Distances between consecutive points are 31 38 38 36 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 35 99 117 60 86 93 91 85 60 67 87 69 38 106 INFO: Distances between consecutive points are 31 39 41 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 107 33 102 117 57 85 94 91 85 61 68 87 70 39 106 INFO: Distances between consecutive points are 31 41 40 36 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 34 99 117 61 86 91 91 84 60 65 87 70 39 107 INFO: Distances between consecutive points are 33 40 41 34 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 42 107 112 65 86 84 91 84 64 59 86 78 40 111 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 41 115 116 56 87 98 88 84 64 73 88 71 38 97 INFO: Distances between consecutive points are 35 37 37 37 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 100 114 62 84 88 90 84 62 60 87 73 42 112 INFO: Distances between consecutive points are 35 38 40 33 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 90 89 84 64 62 88 79 39 114 INFO: Distances between consecutive points are 34 39 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 60 87 96 90 84 64 72 87 72 38 97 INFO: Distances between consecutive points are 34 37 37 36 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 62 89 89 89 83 64 60 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 36 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 106 113 63 87 87 92 84 62 63 89 70 36 100 INFO: Distances between consecutive points are 33 39 39 30 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 107 113 64 87 87 91 84 62 61 89 70 36 100 INFO: Distances between consecutive points are 34 38 39 28 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 42 107 113 62 86 89 92 84 62 65 90 70 36 100 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 116 57 88 98 88 84 66 74 86 72 38 97 INFO: Distances between consecutive points are 34 36 35 38 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 88 77 38 106 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 112 67 85 82 90 84 65 57 84 78 39 112 INFO: Distances between consecutive points are 34 38 37 36 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 61 84 89 90 84 62 64 87 72 40 111 INFO: Distances between consecutive points are 35 38 38 35 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 118 63 89 93 90 84 62 69 88 71 37 97 INFO: Distances between consecutive points are 31 37 38 34 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 41 106 112 66 87 85 91 84 63 59 89 79 41 110 INFO: Distances between consecutive points are 34 37 39 32 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 66 86 85 92 84 63 60 87 77 38 106 INFO: Distances between consecutive points are 35 38 39 32 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 106 114 63 89 89 92 85 62 66 91 70 36 100 INFO: Distances between consecutive points are 33 38 38 32 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 93 113 68 87 86 91 85 60 60 86 72 38 112 INFO: Distances between consecutive points are 32 36 40 36 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 40 107 113 64 89 87 91 85 62 61 90 78 41 110 INFO: Distances between consecutive points are 34 38 39 32 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 43 107 118 61 88 95 89 84 63 72 88 71 37 97 INFO: Distances between consecutive points are 29 36 36 37 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 65 86 87 93 84 63 62 87 77 37 105 INFO: Distances between consecutive points are 34 38 39 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 60 85 92 88 83 60 68 85 72 35 102 INFO: Distances between consecutive points are 35 40 38 39 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 118 60 88 91 89 84 64 61 88 78 39 114 INFO: Distances between consecutive points are 34 40 39 37 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 63 86 89 88 83 62 63 85 75 35 108 INFO: Distances between consecutive points are 37 40 37 38 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 65 85 74 35 106 INFO: Distances between consecutive points are 36 40 37 39 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 32 101 114 59 83 90 91 84 62 62 87 72 40 111 INFO: Distances between consecutive points are 35 40 40 34 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 42 107 112 65 86 86 92 84 63 62 88 77 38 108 INFO: Distances between consecutive points are 34 38 38 34 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 107 113 64 86 89 93 83 64 66 90 71 36 100 INFO: Distances between consecutive points are 34 38 37 32 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 61 86 91 88 83 61 67 85 74 35 106 INFO: Distances between consecutive points are 35 40 37 40 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 115 62 88 89 91 84 64 63 87 75 34 104 INFO: Distances between consecutive points are 35 39 38 35 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 113 65 86 86 92 84 63 61 87 77 38 106 INFO: Distances between consecutive points are 34 38 39 33 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 38 111 119 61 87 91 90 83 59 67 86 71 35 102 INFO: Distances between consecutive points are 38 41 40 38 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 59 85 92 88 82 63 66 84 75 35 106 INFO: Distances between consecutive points are 39 38 36 40 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 62 84 88 90 84 61 62 87 72 41 110 INFO: Distances between consecutive points are 36 38 39 33 WARN: Could not find satisfactory control point fit - try 78 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 117 59 88 96 89 84 63 72 88 71 38 97 INFO: Distances between consecutive points are 33 37 37 36 WARN: Could not find satisfactory control point fit - try 79 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 114 117 60 85 90 90 82 64 63 87 77 38 110 INFO: Distances between consecutive points are 39 40 38 36 WARN: Could not find satisfactory control point fit - try 80 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 82 90 84 64 59 85 79 40 110 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 81 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 83 90 84 64 59 85 80 42 111 INFO: Distances between consecutive points are 34 36 36 35 WARN: Could not find satisfactory control point fit - try 82 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 33 102 114 58 83 91 90 84 63 65 87 73 42 113 INFO: Distances between consecutive points are 34 39 38 36 WARN: Could not find satisfactory control point fit - try 83 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 100 114 59 83 90 90 84 62 60 87 73 42 113 INFO: Distances between consecutive points are 34 39 41 33 WARN: Could not find satisfactory control point fit - try 84 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 58 85 93 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 39 38 37 41 WARN: Could not find satisfactory control point fit - try 85 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 73 38 111 INFO: Distances between consecutive points are 32 36 38 35 WARN: Could not find satisfactory control point fit - try 86 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 120 62 86 90 88 83 61 64 85 75 35 108 INFO: Distances between consecutive points are 36 40 38 40 WARN: Could not find satisfactory control point fit - try 87 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 40 112 116 58 85 94 88 82 63 67 84 75 35 106 INFO: Distances between consecutive points are 38 37 37 41 WARN: Could not find satisfactory control point fit - try 88 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 93 88 83 62 69 85 76 37 104 INFO: Distances between consecutive points are 34 38 36 40 WARN: Could not find satisfactory control point fit - try 89 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 36 100 117 62 86 92 91 86 62 67 89 78 41 107 INFO: Distances between consecutive points are 33 38 39 35 WARN: Could not find satisfactory control point fit - try 90 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 113 116 57 88 97 88 84 65 73 87 71 38 97 INFO: Distances between consecutive points are 32 37 35 37 WARN: Could not find satisfactory control point fit - try 91 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 33 100 119 60 85 95 88 83 62 70 85 75 36 105 INFO: Distances between consecutive points are 34 37 38 42 WARN: Could not find satisfactory control point fit - try 92 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 117 62 86 94 90 83 64 72 87 72 40 96 INFO: Distances between consecutive points are 31 36 35 34 WARN: Could not find satisfactory control point fit - try 93 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 45 114 114 62 88 90 89 84 64 65 87 74 33 101 INFO: Distances between consecutive points are 35 36 36 36 WARN: Could not find satisfactory control point fit - try 94 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 37 103 114 68 86 85 91 84 64 62 86 74 33 101 INFO: Distances between consecutive points are 36 37 36 34 WARN: Could not find satisfactory control point fit - try 95 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 39 112 116 59 85 93 89 81 63 68 84 76 35 106 INFO: Distances between consecutive points are 39 38 37 42 WARN: Could not find satisfactory control point fit - try 96 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 112 117 60 84 92 90 82 64 66 86 77 38 110 INFO: Distances between consecutive points are 36 39 37 39 WARN: Could not find satisfactory control point fit - try 97 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 106 120 64 87 89 90 84 59 67 85 71 35 102 INFO: Distances between consecutive points are 35 41 38 38 WARN: Could not find satisfactory control point fit - try 98 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 99 114 61 81 89 91 83 62 61 86 74 40 112 INFO: Distances between consecutive points are 36 39 40 36 WARN: Could not find satisfactory control point fit - try 99 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 92 111 69 84 83 89 85 61 59 86 72 39 112 INFO: Distances between consecutive points are 32 34 37 35 WARN: Could not find satisfactory control point fit - try 100 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 2212.85 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 839 streamlines for straying off mask INFO: Rejected 304 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119) Processing pathway 8 of 18... Matching streamline ends INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119) INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 67506 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 98 193 75 108 164 69 88 150 75 73 168 69 83 193 81 INFO: Distances between consecutive points are 31 25 24 29 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz Done in 57.864 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 83 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 47 streamlines as length outliers INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 42884 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 107 187 71 113 167 73 111 158 74 107 138 80 95 113 81 INFO: Distances between consecutive points are 21 9 21 28 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 9.28 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 38520 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 69 194 85 71 186 82 68 157 78 81 115 78 82 111 78 INFO: Distances between consecutive points are 9 29 44 4 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.144 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 18 streamlines for straying off mask INFO: Rejected 3 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134) INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7) INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20097 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 74 96 101 81 101 96 112 105 97 139 100 97 163 79 INFO: Distances between consecutive points are 9 32 27 32 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.013 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2) INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18871 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 81 82 98 81 98 104 83 128 104 82 160 90 86 164 93 INFO: Distances between consecutive points are 17 30 35 6 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz Done in 6.164 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 52 streamlines for straying off mask INFO: Rejected 62 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92) INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12) INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5) INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17882 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 104 74 79 105 85 70 114 106 49 117 118 44 118 133 39 INFO: Distances between consecutive points are 14 31 13 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 4.921 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 491 streamlines for straying off mask INFO: Rejected 76 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99) INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 15900 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 74 76 85 65 107 47 61 115 43 61 119 42 64 128 39 INFO: Distances between consecutive points are 50 10 4 10 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz Done in 3.905 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 181 streamlines for straying off mask INFO: Rejected 652 streamlines for reversing direction INFO: Rejected 40 streamlines as length outliers INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103) INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3) INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 150 131 96 134 121 97 128 98 103 131 85 104 146 86 115 INFO: Distances between consecutive points are 19 25 13 19 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 7.66 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 311 streamlines for straying off mask INFO: Rejected 458 streamlines for reversing direction INFO: Rejected 95 streamlines as length outliers INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3) INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 65106 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 31 133 95 50 121 100 53 100 105 53 83 102 42 73 113 INFO: Distances between consecutive points are 23 22 17 18 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz Done in 16.605 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 353 streamlines for straying off mask INFO: Rejected 59 streamlines for reversing direction INFO: Rejected 77 streamlines as length outliers INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45630 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 135 97 130 120 98 125 87 98 135 80 70 149 73 70 INFO: Distances between consecutive points are 23 33 31 16 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 10.592 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132) INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31157 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 139 102 52 127 99 55 93 101 46 81 79 29 71 78 INFO: Distances between consecutive points are 23 34 27 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.246 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
New invocation of trac-all
Tue Aug 6 08:19:08 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 6936780 58966460 0 372776 5055680 -/+ buffers/cache: 1508324 64394916 Swap: 67032060 1816772 65215288
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 33 139 102 52 127 99 55 93 101 46 81 79 29 71 78 INFO: Distances between consecutive points are 23 34 27 20 Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_* Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz Done in 8.246 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
New invocation of trac-all
Tue Aug 6 08:19:08 BST 2013 /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree /usr/local/freesurfer/bin/trac-all -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp Subject 02ST SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 dsoto wmen-dsoto3 Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 514727 maxlocks unlimited maxsignal 514727 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited
total used free shared buffers cachedMem: 65903240 6936780 58966460 0 372776 5055680 -/+ buffers/cache: 1508324 64394916 Swap: 67032060 1816772 65215288
######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
http://www1.imperial.ac.uk/medicine/people/d.soto/
From: Anastasia Yendiki [ayendiki@nmr.mgh.harvard.edu] Sent: 06 August 2013 14:30 To: Soto, David Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] trac-all inquiry
Hi David - Can you please send your entire log file (from scripts/trac-all.log)? It's hard to tell what caused the errors without looking at the whole thing.
Thanks, a.y
On Tue, 6 Aug 2013, Soto, David wrote:
thanks Anastasia, I have some problems however- could you help please?
as said, I am not using the DICOMS, my diffusion data has been converted to nii and then to mnc my config file mostly accepts the defaults, and is simple as follows. There is a folder 'diffree' which contains the dmri config file, the becs and bvals and the mnc difffusion file $$$$$$$$ setenv SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui set dtroot = /home/dsoto/Documents/fmri/rsdtianawmgui set subjlist = (02ST) set runlist = (1) set dcmroot = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree set dcmlist = (diffdata.mnc) set bvecfile = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t set bvalfile = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t set mnitemp = /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain $$$$$$$$
When i run trac-all -c tracula02ST.txt -prep I get some errors such as
- fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading! bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
Image Exception : #22 :: ERROR: Could not open image
/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' Abort (core dumped)
convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat Cannot read input-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat Cannot read concat-matrix convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat Cannot read input-matrix
Intriguinly, the script completes with the message
trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
HOWEVER, when I attempt the next step trac-all -c tracula02ST.txt -bedp it aborts saying "/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found"
I am running FSL 5.0.4 under Ubuntu 12.04
cheers ds
http://www1.imperial.ac.uk/medicine/people/d.soto/
From: Anastasia Yendiki [ayendiki@nmr.mgh.harvard.edu] Sent: 02 August 2013 19:15 To: Soto, David Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] trac-all inquiry
Hi David - You need to run each of the steps (-prep, -bedp, -path) separately. You can't run them all at the same time. See tutorial: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/RunningTracula
Hope this helps, a.y
On Fri, 2 Aug 2013, David Soto wrote:
Hi,
I have successfully run recon-all in my dataset and now am attempting to use trac-all on my diffusion data obtained on a Siemens scanner.
Diffusion dicoms were transformed to .nii using MRIConverter and then to .mnc using
nii2mnc output.nii output_t.mnc.
I am trying to run trac-all on a single subject and for this I have created the configuration file attached (tracula02ST)
As you can see the SUBJECTS_DIR is /home/dsoto/Documents/fmri/rsdtianawmgui and within each subject the T1 serving as input for recon-all are in mri/orig
while the diffusion images are in a folder call diffdata (named output_t.mnc) which also contains the bvecs and bvals files, which were transposed and organised according to the tutorial (named as bvecs_t.txt and bvals_t.txt)
When I run: trac-all -c tracula02ST.txt
I get: ERROR: no analysis step (-{prep,bedp,path}) has been selected
THEN I run: trac-all -prep -bedp -path -c tracula02ST.txt which runs for 5 seconds or so and then gives the long output text below with an error message.
Segmentation fault (core dumped) foreach: No match.
The trac-all.log is attached also.
Could you please help?
Cheers
David
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Anastasia Yendiki -
Soto, David