Thank you very much!! ________________________________ De: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu en nombre de Douglas N. Greve dgreve@mgh.harvard.edu Enviado: jueves, 12 de abril de 2018 16:39 Para: freesurfer@nmr.mgh.harvard.edu Asunto: Re: [Freesurfer] RV: "preproc-sess" with intermediate volume

Hi David, move your intermediate volume to

session_1/ifsd/001/orig.mgz

then try

-bbr-int ifsd orig

On 04/12/2018 04:10 AM, David Sánchez Bestué wrote:

Dear all,

I have a problem with the command: "preproc-sess"

I wanted to use the Registration option to add an intermediate volume. The only documentation I could find about it was the one that appears with the command: "preproc-sess --help"

Registration options -init-fsl : use fsl to initialize bbr registration -init-spm : use spm to initialize bbr registration (needs matlab) -init-header : use geometry to initialize bbr registration -bbr-int ifsd istem : use intermediate volume in sess/ifsd/RRR/istem

I used the last flag in my line as follows:

preproc-sess -s session_1 -fsd bold -surface self lhrh -mni305 -fwhm 5 -per-run -bbr-int ifsd istem

I got this error:

ERROR: could not determine file for ifsd/001/istem

It seems that the path is not working but I do not why. The relevant paths are this:

session_1/bold/001/f.nii session_1/ifsd/001/istem/orig.mgz

Any help would be really appreciated!

Thank you all

Bests,

David

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