External Email - Use Caution
Dear FreeSurfer Developers,
I am encountering a weird error in performing recon-all in my dicom directory. I believe the problem is here (snippet copied from talairach_avi.log. I have also attached here the recon-all.log, as well as the talaraich_avi.log. Does anyone know or have seen this problem before? I will appreciate any kind of help, please let me know if I need to provide anything else.
FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Platform: MacOS Monterey (apple silicon)
$Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /Applications/freesurfer/6/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Applications/freesurfer/6/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 t4_read: talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4pupuÀþN èEÑ�àÔ�àÔ7SÎ0°þN #Öô>ÖxþN °þN �þN SÎðþN
þN Ñ@ àþN � Ñ read error t4_read: transform initialized to I4 rotation matrix determinant 1.000000
Thank you in advance! I appreciate any help!
Best,
Vincent
What is the error? The funny characters? Can you just send the entire logs (recon-all and avi.log)?
On 10/25/2022 11:49 AM, Jonany, Vincent Joe wrote:
External Email - Use Caution
Dear FreeSurfer Developers,
I am encountering a weird error in performing recon-all in my dicom directory. I believe the problem is here (snippet copied from talairach_avi.log. I have also attached here the recon-all.log, as well as the talaraich_avi.log. Does anyone know or have seen this problem before? I will appreciate any kind of help, please let me know if I need to provide anything else.
FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Platform: MacOS Monterey (apple silicon)
$Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /Applications/freesurfer/6/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Applications/freesurfer/6/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 t4_read: talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4pupuÀþN èEÑ�àÔ�àÔ7SÎ0°þN #Öô>ÖxþN °þN �þN SÎðþN
þN Ñ@ àþN � Ñ read error t4_read: transform initialized to I4 rotation matrix determinant 1.000000
Thank you in advance! I appreciate any help!
Best,
Vincent
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Douglas,
Thank you for the response, I am sorry I forgot to attach the logs in the email. Here are the logs.
Thank you again.
Best,
Vincent On 26. Oct 2022, 16:25 +0200, Douglas N. Greve dgreve@MGH.HARVARD.EDU, wrote: What is the error? The funny characters? Can you just send the entire logs (recon-all and avi.log)?
On 10/25/2022 11:49 AM, Jonany, Vincent Joe wrote:
External Email - Use Caution
Dear FreeSurfer Developers,
I am encountering a weird error in performing recon-all in my dicom directory. I believe the problem is here (snippet copied from talairach_avi.log. I have also attached here the recon-all.log, as well as the talaraich_avi.log. Does anyone know or have seen this problem before? I will appreciate any kind of help, please let me know if I need to provide anything else.
FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Platform: MacOS Monterey (apple silicon)
$Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /Applications/freesurfer/6/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Applications/freesurfer/6/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 t4_read: talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4pupuÀþN èEÑ�àÔ�àÔ7SÎ0°þN #Öô>ÖxþN °þN �þN SÎðþN
þN Ñ@ àþN � Ñ read error t4_read: transform initialized to I4 rotation matrix determinant 1.000000
Thank you in advance! I appreciate any help!
Best,
Vincent
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Douglas N. Greve -
Jonany, Vincent Joe