Dear Freesurfer expert,
I am using Freesurfer version 5.1.0. After I ran the freesurfer recon-all -autorecon-all and checked the data I saw that the skull wasn't removed as a whole (yet it is not part of the pial or white matter margin). I was wondering if it just doesn't look good or that part of the skull that was not removed was calculated as part of the ICV or somthing else.
Thanks in advance, efrat
Hi Efrat
if it's not messing up the surfaces or the aseg then you don't have to worry about it
cheers Bruce On Wed, 31 Oct 2012, Efrat Kliper wrote:
Dear Freesurfer expert,
I am using Freesurfer version 5.1.0. After I ran the freesurfer recon-all -autorecon-all and checked the data I saw that the skull wasn't removed as a whole (yet it is not part of the pial or white matter margin). I was wondering if it just doesn't look good or that part of the skull that was not removed was calculated as part of the ICV or somthing else. Thanks in advance, efrat
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Efrat Kliper