I was using the std version. It works well under dev.

Thanks!

Dahlia.

By the way, the FSwiki entry on mri_annotation2label does not mention the -annotation command option (but perhaps this is on purpose?)

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From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Monday, October 30, 2006 3:24 PM To: Dahlia Sharon Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_annotation2label

Which version are you using? The dev version should not require a --table option

doug

Dahlia Sharon wrote:

Hi,

I have two annotations, ?h.aparc.annot and ?h.aparc.a2005s.annot, created by recon-all with the -cortparc and -cortparc2 command options. I would like to convert each of these to a set of labels.

For aparc.a2005s.annot I run (hopefully this is correct):

mri_annotation2label --subject subj04_bay2 --hemi rh --annotation aparc.a2005s --labelbase $SUBJECTS_DIR/subj04_bay2/label/aparc2005-rh --table $FREESURFER_HOME/Simple_surface_labels2005.txt

But for aparc.annot I don't know what table file I should specify (there are two other files in the $FREESURFER_HOME folder that could potentially be correct: Simple_surface_labels200s.txt and surface_labels.txt).

Could you tell me which table to use for aparc.annot?

Thanks,

Dahlia.

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