Dear freesurfer developers and users,
I encountered an error as 'segmentation fault (core dumped)' when I run 'recon-all -all -s $s -hippocampal-subfields-T1T2 $s/T2/*.mgz T1T2'. Attached is the error log.
The version of freesurfer is 'freesurfer-Linux-centos6_x86_64-dev-20151006'.
Here goes our server information: LSB Version: :base-4.0-amd64:base-4.0-ia32:base-4.0-noarch:core-4.0-amd64:core-4.0-ia32:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-ia32:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-ia32:printing-4.0-noarch Distributor ID: RedHatEnterpriseServer Description: Red Hat Enterprise Linux Server release 6.6 (Santiago) Release: 6.6
Thank you in advance for your help.
----- Fengji
Dear fs experts,
Could anybody help with the error we reported a week ago? We tested running the same command on the latest version of freesurfer and the same error msg appeared again.
Thanks in advance!
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Dear freesurfer developers and users,
I encountered an error as 'segmentation fault (core dumped)' when I run 'recon-all -all -s $s -hippocampal-subfields-T1T2 $s/T2/*.mgz T1T2'. Attached is the error log.
The version of freesurfer is 'freesurfer-Linux-centos6_x86_64-dev-20151006'.
Here goes our server information: Distributor ID:RedHatEnterpriseServer Description:Red Hat Enterprise Linux Server release 6.6 (Santiago) Release:6.6
Thank you in advance for your help.
----- Fengji
Hi Fengji
hmmm, I don't remember ever seeing a core dump in mri-segstats before. If you upload the entire subject dir (tarred and gzipped) to our ftp site we will fix it.
cheers Bruce
On Mon, 21 Dec 2015, Fengji Geng wrote:
Dear fs experts,
Could anybody help with the error we reported a week ago? We tested running the same command on the latest version of freesurfer and the same error msg appeared again.
Thanks in advance!
Dear freesurfer developers and users, I encountered an error as 'segmentation fault (core dumped)' when I run 'recon-all -all -s $s -hippocampal-subfields-T1T2 $s/T2/*.mgz T1T2'. Attached is the error log.
The version of freesurfer is 'freesurfer-Linux-centos6_x86_64-dev-20151006'.
Here goes our server information: Distributor ID:RedHatEnterpriseServer Description:Red Hat Enterprise Linux Server release 6.6 (Santiago) Release:6.6
Thank you in advance for your help.
----- Fengji
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Fengji Geng