Hello
I'm having problems with tksurfer. It crashes whenever I load overlays using File -> Load Overlays. Am not too sure why. Could someone help? I'm using freesurfer 5.1.0 and fsl 5.0.6 on Mac OSX version 10.7.5
Here's what i did
bash-3.2$ tksurfer AMP01 rh inflated
subject is AMP01
hemi is rh
surface is inflated
surfer: current subjects dir: /Applications/freesurfer5.1.0/subjects
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer: /Users/Joo/Documents/fMRI/AMMatch/analysis
checking for nofix files in 'inflated'
Reading image info (/Applications/freesurfer5.1.0/subjects/AMP01)
Reading /Applications/freesurfer5.1.0/subjects/AMP01/mri/orig.mgz
surfer: Reading header info from /Applications/freesurfer5.1.0/subjects/AMP01/mri/orig.mgz
surfer: vertices=134552, faces=269100
surfer: single buffered window
surfer: tkoInitWindow(AMP01)
surfer: using interface /Applications/freesurfer5.1.0/tktools/tksurfer.tcl
Reading /Applications/freesurfer5.1.0/tktools/tkm_common.tcl
Reading /Applications/freesurfer5.1.0/tktools/tkm_wrappers.tcl
Reading /Applications/freesurfer5.1.0/lib/tcl/fsgdfPlot.tcl
Reading /Applications/freesurfer5.1.0/tktools/tkUtils.tcl
Successfully parsed tksurfer.tcl
reading white matter vertex locations...
% HIPS unsupported
what overlay are you trying to load? On Wed, 19 Mar 2014, Joo Tan wrote:
Hello
I'm having problems with tksurfer. It crashes whenever I load overlays using File -> Load Overlays. Am not too sure why. Could someone help? I'm using freesurfer 5.1.0 and fsl 5.0.6 on Mac OSX version 10.7.5
Here's what i did
bash-3.2$ tksurfer AMP01 rh inflated
subject is AMP01
hemi is rh
surface is inflated
surfer: current subjects dir: /Applications/freesurfer5.1.0/subjects
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer: /Users/Joo/Documents/fMRI/AMMatch/analysis
checking for nofix files in 'inflated'
Reading image info (/Applications/freesurfer5.1.0/subjects/AMP01)
Reading /Applications/freesurfer5.1.0/subjects/AMP01/mri/orig.mgz
surfer: Reading header info from /Applications/freesurfer5.1.0/subjects/AMP01/mri/orig.mgz
surfer: vertices=134552, faces=269100
surfer: single buffered window
surfer: tkoInitWindow(AMP01)
surfer: using interface /Applications/freesurfer5.1.0/tktools/tksurfer.tcl
Reading /Applications/freesurfer5.1.0/tktools/tkm_common.tcl
Reading /Applications/freesurfer5.1.0/tktools/tkm_wrappers.tcl
Reading /Applications/freesurfer5.1.0/lib/tcl/fsgdfPlot.tcl
Reading /Applications/freesurfer5.1.0/tktools/tkUtils.tcl
Successfully parsed tksurfer.tcl
reading white matter vertex locations...
% HIPS unsupported
-- CheersJoo
freesurfer@nmr.mgh.harvard.edu