i have a subject (who is not out of the ordinary) where the cerebellum is sticking to one hemisphere. i make the usual edits on the segmentation, and indicate the coordinates for the cutting planes to rid myself o the cerebellum. i then save everything and re-run the create surface program. nothing happens!
literally nothing happens, my edits still appear in the wm volume, but looking at the filled volume, it looks like nothing is even affected. in addition, the surfaces don't seem to have been altered. what's going on?
Hi Kevin,
Are you using Talairach co-ordinates? Is the talairach.xfm okay -- does it look reasonable?
On Thu, 9 Sep 2004, Kevin DeSimone wrote:
i have a subject (who is not out of the ordinary) where the cerebellum is sticking to one hemisphere. i make the usual edits on the segmentation, and indicate the coordinates for the cutting planes to rid myself o the cerebellum. i then save everything and re-run the create surface program. nothing happens!
literally nothing happens, my edits still appear in the wm volume, but looking at the filled volume, it looks like nothing is even affected. in addition, the surfaces don't seem to have been altered. what's going on?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Kevin,
is the fill failing? Can you send along the logs?
cheers, Bruce
On Thu, 9 Sep 2004, Kevin DeSimone wrote:
i have a subject (who is not out of the ordinary) where the cerebellum is sticking to one hemisphere. i make the usual edits on the segmentation, and indicate the coordinates for the cutting planes to rid myself o the cerebellum. i then save everything and re-run the create surface program. nothing happens!
literally nothing happens, my edits still appear in the wm volume, but looking at the filled volume, it looks like nothing is even affected. in addition, the surfaces don't seem to have been altered. what's going on?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Evelina Busa -
Kevin DeSimone