If you have an example func of some kind, you can just run bbregister passing the example func with --mov. This will give you a register.dat file which can be used in mri_label2vol to map the subcortical seg into the function space. doug

On 04/28/2014 06:18 PM, Jones, Richard wrote:

I have T1 data that has been run through freesurfer and I want to apply the subcortical parcellations from that analysis to some QSM data. The mailing list and website refer to using reg-feat2anat but this require an existing feat directory. If I make a "pseudo" feat directory with my QSM data so that I can use reg-feat2anat does it just need to contain the subfolder reg containing the the QSM data as "example_func.nii" and the registration matrix from using FLIRT to register the QSM data to MNI space as "example_func2standard.mat", or is there something else that needs to be included?

Thanks,

Richard

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