Hi Bruce,

I tried including -make all and it gave me this: "ERROR: Flag -make unrecognized."

-Jonathan

Jonathan Winkle McGovern Institute for Brain Research Massachusetts Institute of Technology 617-324-5265

On 4/23/2010 12:43 PM, Bruce Fischl wrote:

Hi Jonathan,

can you try running recon-all with -make all?

cheers Bruce On Thu, 22 Apr 2010, Jonathan Winkle wrote:

...

Hey Mailing List,

I'm getting the following error in the smooth2 stage of reconstruction:

#-------------------------------------------- #@# Smooth2 lh Wed Apr 21 17:22:08 EDT 2010

mris_smooth -n 3 -nw ../surf/lh.white ../surf/lh.smoothwm

/mindhive/desimonelab/structurals/monkeys/muli/scripts smoothing for 3 iterations MRISread(../surf/lh.white): could not open file No such file or directory mris_smooth: could not read surface file ../surf/lh.white No such file or directory Linux ba2 2.6.31-20-generic #57-Ubuntu SMP Mon Feb 8 09:02:26 UTC 2010 x86_64 GNU/Linux

recon-all exited with ERRORS at Wed Apr 21 17:22:08 EDT 2010

The lh.white file has not been created yet, so I'm not sure why it's trying to access it. Any help would be much appreciated. Thanks!

-Jonathan

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