Sameer,

The freesurfer atlases are found in the $FREESURFER_HOME/average directory. The .gcs files are the surface atlases and the .gca files are the subcortical atlases. These are used by the recon-all script. I'm not sure what you mean by MNI and JHU atlases. The other files in the average directory are volume averages used for different registrations.

Nick

On Fri, 2008-11-14 at 15:14 -0600, sameer kumar wrote:

Hi all,

I am trying to find the sub directory in the Freesurfer directory which contains all the atlases like MNI, JHU, etc. Can you please help me out...

Thanks, Regards, Sameer Kumar Gottipati

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer