did the skull stripping fail? On Fri, 12 Aug 2011, Tali Swisher wrote:

Hi all,

I have a case whose resulting wmparc.mgz is completely misaligned from the brain, and is much smaller than it should be. The case ran fine, however, and I received no error messages at any point. Any ideas?

Thanks! Tali

On Fri, Aug 12, 2011 at 10:39 AM, Tali Swisher tali@bwh.harvard.edu wrote: Hi all,

  I have a case whose resulting wmparc.mgz is completely misaligned from the brain, and is much smaller than it should be. The case ran
  fine, however, and I received no error messages at any point. Any ideas? I've attached the wmparc.mgz, brain.mgz, and the
  recon-all.log.

  Thanks!
  Tali


  --
  Talis M. Swisher, BA
  Research Assistant
  Psychiatry Neuroimaging Laboratory
  Harvard Medical School, Brigham and Women's Hospital
  1249 Boylston St, 3rd Floor
  Boston, MA 02215
  Office: (617) 525-6119
  Cell: (336) 577-5071
  Fax: (617) 525-6150

-- Talis M. Swisher, BA Research Assistant Psychiatry Neuroimaging Laboratory Harvard Medical School, Brigham and Women's Hospital 1249 Boylston St, 3rd Floor Boston, MA 02215 Office: (617) 525-6119 Cell: (336) 577-5071 Fax: (617) 525-6150