Hi,
I have two questions:
1) I just upgrade our intel Mac OS from Tiger to Leopard, and now are having problem using qdec. I am using version 4.0.0. When I type qdec in xterm, it outputs the following error msg:
dyld: Library not loaded: /usr/X11R6/lib/libexpat.0.dylib Referenced from: /Applications/freesurfer/lib/KWWidgets/lib/KWWidgets/libKWWidgets.dylib Reason: image not found Trace/BPT trap
Any idea how to fix this?
2) We have done the editing on 300 subjects (pial, wm and control point) and re-generated all the surfaces. One thing I realized is that the aseg.mgz does not follow the surfaces as it is processed before the surface reconstruction. Is there any way to re-generate the aseg.mgz using ?h.pial, ?h.white?
Thanks, Zheng Hui
Zheng Hui,
1) We don't yet have a system with the new Leopard OS, but have it on order, so we should be able to test this soon. Does the file /usr/X11R6/lib/libexpat.0.dylib exist on your system?
2) There is not a way that I know of to regenerate the aseg.mgz file using the surfaces. There are the ?h.ribbon.mgz files though, which are based on the ?h.white and ?h.pial surface files.
Nick
On Tue, 2007-11-27 at 18:00 +0800, zheng.hui@singhealth.com.sg wrote:
Hi,
I have two questions:
- I just upgrade our intel Mac OS from Tiger to Leopard, and now are
having problem using qdec. I am using version 4.0.0. When I type qdec in xterm, it outputs the following error msg:
dyld: Library not loaded: /usr/X11R6/lib/libexpat.0.dylib Referenced from: /Applications/freesurfer/lib/KWWidgets/lib/KWWidgets/libKWWidgets.dylib Reason: image not found Trace/BPT trap
Any idea how to fix this?
- We have done the editing on 300 subjects (pial, wm and control point)
and re-generated all the surfaces. One thing I realized is that the aseg.mgz does not follow the surfaces as it is processed before the surface reconstruction. Is there any way to re-generate the aseg.mgz using ?h.pial, ?h.white?
Thanks, Zheng Hui _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Zheng,
I'll leave 1) for Nick. As for 2, that's why we use the surfaces for cortical and white matter morphometry- they are more accurate than the voxel-based techniques.
cheers Bruce On Tue, 27 Nov 2007 zheng.hui@singhealth.com.sg wrote:
Hi,
I have two questions:
- I just upgrade our intel Mac OS from Tiger to Leopard, and now are
having problem using qdec. I am using version 4.0.0. When I type qdec in xterm, it outputs the following error msg:
dyld: Library not loaded: /usr/X11R6/lib/libexpat.0.dylib Referenced from: /Applications/freesurfer/lib/KWWidgets/lib/KWWidgets/libKWWidgets.dylib Reason: image not found Trace/BPT trap
Any idea how to fix this?
- We have done the editing on 300 subjects (pial, wm and control point)
and re-generated all the surfaces. One thing I realized is that the aseg.mgz does not follow the surfaces as it is processed before the surface reconstruction. Is there any way to re-generate the aseg.mgz using ?h.pial, ?h.white?
Thanks, Zheng Hui _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu