Hi Knut,

in part it depends on the bandwidth and readout direction of your acquisition, as with the wrong parameters orbital fat can shift into brain and then there is really nothing you can do to recover the true anatomy in that location. Can you send us an image?

thanks Bruce

On Tue, 4 Oct 2011, Knut J Bjuland wrote:

Hi I have processed several subjects using recon-all. However there is problem with non-brain matter being labels as cortex around the eye ball. Are there any automatically methods to correct mislabeling of eye socket as cortex?  I am having problem with mislabeling in ctx-lh-lateral orbital and ctx-rh-lateralorbital. Can I issue add any options to the recon-all? Cheers Knut J