Dear All

I reoriented a volume on exporting to analyze format for an application

mri_convert -i path to file/T1.mgz --out_orientation PSR -o path to file/T1reoriented.mgz mri_convert -ot analyze -i path to file/T1reoriented.mgz -o path to file/T1reorientedPSR.img

I need to reorient from the command line the original pial surfaces (?h.pial) generated from the recon-all process to new surfaces to match the new T1 orientation (T1 reorientedPSR).

Thank you, please advise,

Octavian