we use fopen, so if the instantiation of it on an os is case sensitive (as in linux) then we are as well. You might try converting the COR volume to something else (e.g. afni) and name it all lower case. It's only in this instance that the names of the files are hardcoded. e.g.:

mri_convert $SUBJECTS_DIR/$subject/mri/orig $SUBJECTS_DIR/mri/orig.brik

cheers, Bruce

On Mon, 6 Jun 2005, Andrew H Bell wrote:

To all

Has anyone had any experience using an external drive with freesurfer (under LINUX)?

I am trying to use a FAT32 drive with Freesurfer (I also use this drive with XP) and I keep running into the following error:

"First T1 image: /mnt/usb/afnidata/subjects/bert/mri/T1/COR-001 not found"

However, when I check, the file is there but is listed in lower-case (i.e., "cor-001"). I cannot rename the file to upper-case - the file already exists...

Is Freesurfer case-sensitive and if so, is there a way to tell it to look for lower-case filenames?

Thanks

Andy

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer