Hello,
I'm wondering how to obtain the functional data for the hippocampus between specific slices. Is there a command I can run to do this? If not, what would be the best course of action?
Best, Sunil I Patel
Sunil, can you elaborate on what you need? slices defined how? In the functional in the volume? doug
Sunil Patel wrote:
Hello,
I'm wondering how to obtain the functional data for the hippocampus between specific slices. Is there a command I can run to do this? If not, what would be the best course of action?
Best, Sunil I Patel _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
register your functional data to your T1, extract a hippocampus label from the aseg.mgz and apply the registration matrix to it using mri_convert to map it back to the functional space and use the mapped label to extract.
cheers Bruce On Tue, 9 Aug 2011, Sunil Patel wrote:
Hello,
I'm wondering how to obtain the functional data for the hippocampus between specific slices. Is there a command I can run to do this? If not, what would be the best course of action?
Best, Sunil I Patel _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Douglas N Greve -
Sunil Patel