Dear All,
After running recon-all and checked all the required steps, some part of the right cerebral white matter was still segmented as right cerebral cortex in the aseg.mgz as seen in the attached pictures (red cross). I would like to edit these two labels in aseg which is OK, but how can I get the correct values in the aseg.stats file?
Thank you for your help!
Andrea
[image: Szövegközi kép 4][image: Szövegközi kép 3]
Hi Andrea
if the surfaces are ok you probably don't need to worry about it, as we recommend using the surface-based stats not the voxel-based ones for cortex and cerebral white matter. It does look like the pial surface is grabbing a bit of the tentorium, which you could fix if you care about that area
cheers Bruce On Wed, 25 Jun 2014, Andrea Horváth wrote:
Dear All,
After running recon-all and checked all the required steps, some part of the right cerebral white matter was still segmented as right cerebral cortex in the aseg.mgz as seen in the attached pictures (red cross). I would like to edit these two labels in aseg which is OK, but how can I get the correct values in the aseg.stats file?
Thank you for your help!
Andrea
Szövegközi kép 4 Szövegközi kép 3
Hi Andrea, To regenerate the aseg.stats file after aseg edits you can run:
recon-all -segstats -s <subjID>
-Louis
On Wed, 25 Jun 2014, Andrea Horváth wrote:
Dear All,
After running recon-all and checked all the required steps, some part of the right cerebral white matter was still segmented as right cerebral cortex in the aseg.mgz as seen in the attached pictures (red cross). I would like to edit these two labels in aseg which is OK, but how can I get the correct values in the aseg.stats file?
Thank you for your help!
Andrea
Szövegközi kép 4 Szövegközi kép 3
freesurfer@nmr.mgh.harvard.edu