Dear Experts,
I have the following error with recon-all (freesurfer v 5.3). Anybody have an idea about this problem?
Many thanks in advance,
Mohamed
--------------------------------------------------------orig_nu.log file--------------------------------------
Iteration 1 Fri Feb 26 14:13:20 CET 2016 nu_correct -clobber ./tmp.mri_nu_correct.mni.20504/nu0.mnc ./tmp.mri_nu_correct.mni.20504/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.20504/0/ -iterations 1000 -distance 50 Can't locate MNI/Startup.pm in @INC (you may need to install the MNI::Startup module) (@INC contains: /usr/local/freesurfer/mni/share/perl5 /etc/perl /usr/local/lib/perl/5.18.2 /usr/local/share/perl/5.18.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.18 /usr/share/perl/5.18 /usr/local/lib/site_perl .) at /usr/local/freesurfer/mni/bin/nu_correct line 37. BEGIN failed--compilation aborted at /usr/local/freesurfer/mni/bin/nu_correct line 37. ERROR: nu_correct
Can't locate MNI/Startup.pm in @INC (you may need to install the MNI::Startup module)
Maybe there was a step missed of the installation? If everything is installed properly then recon-all works perfectly. Maybe make sure everything that was required from installation has been done. Or try it again?
On 28 Feb 2016, at 11:17, Mohamed Ali Bahri m.bahri@ulg.ac.be wrote:
Can't locate MNI/Startup.pm in @INC (you may need to install the MNI::Startup module)
I will try to reinstall it again. Many thanks for your kind answer,
Best regards, Mohamed
On 28/02/16 12:44, Maheen Siddiqui wrote:
Can't locate MNI/Startup.pm in @INC (you may need to install the MNI::Startup module)
Maybe there was a step missed of the installation? If everything is installed properly then recon-all works perfectly. Maybe make sure everything that was required from installation has been done. Or try it again?
On 28 Feb 2016, at 11:17, Mohamed Ali Bahri m.bahri@ulg.ac.be wrote:
Can't locate MNI/Startup.pm in @INC (you may need to install the MNI::Startup module)
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Maheen Siddiqui -
Mohamed Ali Bahri