mri_concat --f pib_lh_fsaverage (textfile of subjects and their images) --o concat_lh_pet.mgh
Should I add -mean here for the GLM?
mri_glmfit --y concat_lh_pet.mgh --fsgd pib_fsgd --C group1.group2.mtx --surf fsaverage lh --cortex --glmdir lh.pet.glmdir
My simple 2 group-no-covariates FSGD is as follows. Can I also check that it is alright to have the Groups interspersed throughout the order?
GroupDescriptorFile 1 Title OSGM Class Group1 Class Group2 input FS6_16084_MPRAGE_Neuro.nii Group1 input FS6_22769_MPRAGE_Neuro.nii Group1 input FS6_22863_MPRAGE_Neuro.nii Group1 input FS6_22899_MPRAGE_Neuro.nii Group1 input FS6_22995_MPRAGE_Neuro.nii Group2 input FS6_23008_MPRAGE_Neuro.nii Group1 input FS6_23173_MPRAGE_Neuro.nii Group2 input FS6_23243_MPRAGE_Neuro.nii Group2 input FS6_23244_MPRAGE_Neuro.nii Group1 input FS6_23619_MPRAGE_Neuro.nii Group1 input FS6_23623_MPRAGE_Neuro.nii Group1 input FS6_23755_MPRAGE_Neuro.nii Group2
Thanks again, Doug. Appreciate it so much!
Best Wishes, Elijah
On 3/23/16 9:07 AM, Elijah Mak wrote:
mri_concat --f pib_lh_fsaverage (textfile of subjects and their images) --o concat_lh_pet.mgh
Should I add -mean here for the GLM?
No, that is handled by glmfit
mri_glmfit --y concat_lh_pet.mgh --fsgd pib_fsgd --C group1.group2.mtx --surf fsaverage lh --cortex --glmdir lh.pet.glmdir
My simple 2 group-no-covariates FSGD is as follows. Can I also check that it is alright to have the Groups interspersed throughout the order?
Yes, that is fine.
GroupDescriptorFile 1 Title OSGM Class Group1 Class Group2 inputFS6_16084_MPRAGE_Neuro.niiGroup1 inputFS6_22769_MPRAGE_Neuro.niiGroup1 inputFS6_22863_MPRAGE_Neuro.niiGroup1 inputFS6_22899_MPRAGE_Neuro.niiGroup1 inputFS6_22995_MPRAGE_Neuro.niiGroup2 inputFS6_23008_MPRAGE_Neuro.niiGroup1 inputFS6_23173_MPRAGE_Neuro.niiGroup2 inputFS6_23243_MPRAGE_Neuro.niiGroup2 inputFS6_23244_MPRAGE_Neuro.niiGroup1 inputFS6_23619_MPRAGE_Neuro.niiGroup1 inputFS6_23623_MPRAGE_Neuro.niiGroup1 inputFS6_23755_MPRAGE_Neuro.niiGroup2
Thanks again, Doug. Appreciate it so much!
Best Wishes, Elijah
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Elijah Mak