MNI152
--- Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cell Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla - Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/
----- Mensaje original ----- De: Douglas N Greve greve@nmr.mgh.harvard.edu Fecha: Viernes, Octubre 9, 2009 6:46 pm Asunto: Re: [Freesurfer] skull stripped image with the original resolution
which MNI?
Jose Luis Cantero Lorente wrote:
Thanks, Nick.
In which coordinates system are these skull stripped imaged? Is
it possible to save to .nii these skull stripped images transformed to MNI coordinates?
Thanks again.
Best, Jose
Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cell Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla
- Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/
----- Mensaje original ----- De: Nick Schmansky nicks@nmr.mgh.harvard.edu Fecha: Viernes, Octubre 9, 2009 6:26 pm Asunto: Re: [Freesurfer] skull stripped image with the original
resolution>
add -odt int to the mri_convert flag:
mri_convert -odt int brainmask.mgz brainmask.nii
which saves the output file in 'integer' data format.
On Fri, 2009-10-09 at 18:16 +0200, Jose Luis Cantero Lorente wrote:
Hi there,
would it be feasible to save to .nii the skull stripped image
obtained with Freesurfer but keeping the original image resolution? As it is, Freesurfer allows you this operation, but the resultant .nii image comes with a poor resolution (8-bits) which is useless for my purpose.
Thanks in advance.
Best, Jose
Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cell Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla
- Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
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-
Jose Luis Cantero Lorente