You need to rerun the -prior and -path steps, without the trainfile set to anything, so that it uses the default trainfile with the 33 subjects. Do not set the reinit option, that has nothing to do with this. The reinit option is used when initialization fails but his hasn't happened here.

On Mon, 7 Jan 2013, Alessia Sarica wrote:

Dear Anastasia,I checked the scripts of those patients with folders named avg32 and I noticed that there is setted the trainfile ...difftutorial32.txt I suppose that is the problem.

Now, can I relauch TRACULA with reinit parameter equals to 1, or is it better to delete all folders?

Thanks for you help, Alessia.

2013/1/6 Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu

  That shows you how many subjects were included in the atlas.
  There's a total of 33 subjects in the atlas, and for a general
  purpose study there's no reason not to use all of them. Did you
  change the trainlist parameter in the configuration file at any
  point?

  On Sun, 6 Jan 2013, Alessia Sarica wrote:

        Dear Freesurfer Experts,i'm here again, maybe for a
        trivial question, but
        I didn't find any information about my doubt.

        I'm doing tractography on 36 patients and I noticed
        that some of them have
        dpath folders named "_avg33_mni_flt" and in other
        patients, they are named
        "_avg32_mni_flt".
        Which is the reason for this? Something has gone
        wrong?

        Thanks a lot,
        Alessia.


        --
        Alessia Sarica
        Ph.D. Student Biomedical and Informatics
        Engineering,
        Bioinformatics Laboratory, Department of Surgical
        and Medical Sciences,
        University "Magna Græcia" of Catanzaro,
        Viale Europa (Località Germaneto), 88100 CATANZARO,
        ITALY.
        Phone: +3909613694193

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-- Alessia Sarica Ph.D. Student Biomedical and Informatics Engineering, Bioinformatics Laboratory, Department of Surgical and Medical Sciences, University "Magna Græcia" of Catanzaro, Viale Europa (Località Germaneto), 88100 CATANZARO, ITALY. Phone: +3909613694193