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Hi,

I am trying to run 'recon-all' and then do some QC on the output. With 7.3.2 for skull stripping, I can fairly fix the brain mask with adjusting thresholds. But after fixing, when I run "recon-all -autorecon2 -autorecon3 -subjid <subject name>", the surface didn't change noticeably as it did with version 7.2.0. I am attaching a screenshot to make it understandable. Should there be output differences between 7.2.0 and 7.3.2? Which version is preferred?

Any help will be highly appreciated. Thank you.

Regards, Mahfuz

Md Mahfuzur Rahman, Ph.D. Postdoctoral Research Associate (AC) Center for Translational Research in Neuroimaging and Data Science (TReNDS) Georgia State University