External Email - Use Caution
Dear All,
Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Please take a look at the attached advertisement.
Best,
Didenur Sahin -- Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University Ankara, Turkey 06800
External Email - Use Caution
Dear all, Hope you all are in good health, I want to ask that how I can reslice the two different MRI scans so that when I extract the sagittal slices it all look same, can you help me out
Regards: Rahul Sharma Research Scholar NIT Silchar Assam 9827834360
*"Manners Maketh Man"*
On Sun, Oct 4, 2020 at 9:51 PM Didenur Sahin sahindidenur@gmail.com wrote:
External Email - Use CautionDear All,
Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Please take a look at the attached advertisement.
Best,
Didenur Sahin
Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University Ankara, Turkey 06800
-- Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University Ankara, Turkey 06800
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Rahul
can you explain a bit more what you want? Is this the same subject imaged multiple times? Is it with the same sequence?
cheers Bruce ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Rahul Sharma sharmarahul.26dec@gmail.com Sent: Saturday, October 10, 2020 3:16 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Regarding sMRI scans alignment
External Email - Use Caution
Dear all, Hope you all are in good health, I want to ask that how I can reslice the two different MRI scans so that when I extract the sagittal slices it all look same, can you help me out
Regards: Rahul Sharma Research Scholar NIT Silchar Assam 9827834360
"Manners Maketh Man"
On Sun, Oct 4, 2020 at 9:51 PM Didenur Sahin <sahindidenur@gmail.commailto:sahindidenur@gmail.com> wrote:
External Email - Use Caution
Dear All,
Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Please take a look at the attached advertisement.
Best,
Didenur Sahin
-- Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University
Ankara, Turkey 06800
-- Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University
Ankara, Turkey 06800
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Dataset is taken from ADNI for Alzheimer's Disease Diagnosis. Subjects are different. We want to extract slice between an exact range for all scans but when we are extracting we are facing issue, for ex. I want 80th slice in sagittal view to be extracted but for some images they are similar but for most of the images the extracted slice is different.
Regards: Rahul Sharma Research Scholar NIT Silchar Assam 9827834360
*"Manners Maketh Man"*
On Sun, Oct 11, 2020 at 8:46 PM Fischl, Bruce BFISCHL@mgh.harvard.edu wrote:
Hi Rahul
can you explain a bit more what you want? Is this the same subject imaged multiple times? Is it with the same sequence?
cheers Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Rahul Sharma < sharmarahul.26dec@gmail.com> *Sent:* Saturday, October 10, 2020 3:16 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Regarding sMRI scans alignment
External Email - Use CautionDear all, Hope you all are in good health, I want to ask that how I can reslice the two different MRI scans so that when I extract the sagittal slices it all look same, can you help me out
Regards: Rahul Sharma Research Scholar NIT Silchar Assam 9827834360
- "Manners Maketh Man"*
On Sun, Oct 4, 2020 at 9:51 PM Didenur Sahin sahindidenur@gmail.com wrote:
External Email - Use CautionDear All,
Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Please take a look at the attached advertisement.
Best,
Didenur Sahin
Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University Ankara, Turkey 06800
-- Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University Ankara, Turkey 06800
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Rahul
That may just be an inevitable part of cross-subject anatomical variability. You could try explicitly registering them, or transform them all into Talairach coordinates which should help reduce the variability (e.g. mri_convert -at $SUBJECTS_DIR/$subject/mri/transforms/talairach.xm <input volume> <output volume>
Cheers Bruce
From: Rahul Sharma sharmarahul.26dec@gmail.com Sent: Sunday, October 11, 2020 3:59 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu; Fischl, Bruce BFISCHL@mgh.harvard.edu Subject: Re: [Freesurfer] Regarding sMRI scans alignment
External Email - Use Caution Dataset is taken from ADNI for Alzheimer's Disease Diagnosis. Subjects are different. We want to extract slice between an exact range for all scans but when we are extracting we are facing issue, for ex. I want 80th slice in sagittal view to be extracted but for some images they are similar but for most of the images the extracted slice is different.
Regards: Rahul Sharma Research Scholar NIT Silchar Assam 9827834360
"Manners Maketh Man"
On Sun, Oct 11, 2020 at 8:46 PM Fischl, Bruce <BFISCHL@mgh.harvard.edumailto:BFISCHL@mgh.harvard.edu> wrote: Hi Rahul
can you explain a bit more what you want? Is this the same subject imaged multiple times? Is it with the same sequence?
cheers Bruce ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Rahul Sharma <sharmarahul.26dec@gmail.commailto:sharmarahul.26dec@gmail.com> Sent: Saturday, October 10, 2020 3:16 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Regarding sMRI scans alignment
External Email - Use Caution Dear all, Hope you all are in good health, I want to ask that how I can reslice the two different MRI scans so that when I extract the sagittal slices it all look same, can you help me out
Regards: Rahul Sharma Research Scholar NIT Silchar Assam 9827834360
"Manners Maketh Man"
On Sun, Oct 4, 2020 at 9:51 PM Didenur Sahin <sahindidenur@gmail.commailto:sahindidenur@gmail.com> wrote:
External Email - Use Caution Dear All,
Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Please take a look at the attached advertisement.
Best,
Didenur Sahin -- Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University Ankara, Turkey 06800
-- Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM)
Bilkent University Ankara, Turkey 06800
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear All, Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Please take a look at the attached advertisement. Best, Didenur Sahin --
ANNOUNCEMENT OF POSTDOCTORAL FELLOWSHIP In: Clinical Neuroscience And Cognitive Neuroimaging Brain Development And Psychosis Lab, National Magnetic Resonance Research Center (UMRAM) & Aysel Sabuncu Brain Research Centre (ASBAM) & Department of Psychology, Bilkent University, Turkey. Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Located within the National Magnetic Resonance Research Center (UMRAM) & Aysel Sabuncu Brain Research Centre (ASBAM), the Brain Development And Psychosis Lab conducts research across adolescent brain development and psychosis. The primary mission of the lab is to understand the cognitive, neurobiological, and genetic mechanisms that influence an individual’s susceptibility to develop psychosis (mainly schizophrenia). We are seeking a candidate with experience in experimental design and neuroimaging methodology (e.g., functional, structural, diffusion MRI). A Ph.D. in cognitive science, neuroscience, engineering or related field is required. Experience in computational methods used in neuroimaging and psychophysiology (e.g., Matlab, Python, UNIX, LINUX, AFNI, FSL, SPM, Freesurfer) and computer programing is particularly desirable. Advanced skill in experimental design, quantitative methods, statistical modeling, and the ability to carry out independent statistical analyses using standard software packages (e.g., SPSS, SAS, R) are desirable. The successful candidate will have demonstrated academic productivity in the form of peer-reviewed scientific publications. Candidates must be highly motivated to develop expertise in applying cognitive science and neuroimaging methods to problems in brain development research and neuropsychiatric disease research. The candidate will have the opportunity to analyze and interpret multi-modal MRI data from an ongoing project on brain development, which aims to provide neurobiological insights into the genetic and environmental mechanisms of risk around the time of life when psychotic symptoms typically appear. The project is funded by The Scientific And Technological Research Council Of Turkey (TUBITAK). Postdoctoral fellows will receive one on one mentoring in clinical/human research methodology and work in a collaborative, multi-disciplinary environment to gain experience in adolescence-and-psychosis-centered research. The postdoctoral fellowship position is for 18 months, renewable subject to securing further funding. Please email a CV and cover letter to Prof. Dr. Timothea Toulopoulou (ttoulopoulou@bilkent.edu.tr mailto:ttoulopoulou@bilkent.edu.tr). Bilkent was recently ranked #28 in the world by the Times Higher Education among universities under 50 years old. The language of instruction is English. The Psychology Department and the Interdisciplinary Graduate Program in Neuroscience offer Master’s and PhD programs. For 5 consecutive years, each newly admitted Psychology major has scored in the top 5% or higher on the national university entrance exam. The Psychology Department has newly renovated research laboratories, and UMRAM has state-of-the-art facilities, which include a 3 Tesla MR scanner, animal research center, and EEG equipment. Bilkent is located in Ankara, Turkey’s metropolitan capital with daily direct flights to Istanbul and other major European cities.
On Sun, Oct 4, 2020 at 7:20 PM Didenur Sahin <sahindidenur@gmail.com mailto:sahindidenur@gmail.com> wrote: Dear All, Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Please take a look at the attached advertisement. Best, Didenur Sahin -- Didenur Şahin Ph.D. Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM) Bilkent University Ankara, Turkey 06800
freesurfer@nmr.mgh.harvard.edu
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Didenur Sahin -
Fischl, Bruce -
Rahul Sharma