My files are dicoms and have no extension in the end of their name (IM_0465 for example) . Is it possible to change the format ?
thanks ,
Antoine
________________________________________________________________________________
Talairach is about orientation. What is the format of your file? If it is .hdr and.img, it will fail.
On 4 May 2010 11:43, Antoine Leflon antoine1.leflon@etudiant.univ-lille1.fr wrote:
Hi all ,
I've used data from another Doctor , freesurfer told me the FOV was 330 so I put the flag -cw256 in the command recon-all but the Talairach just failed ... I got this error message . Can someone explain please ? ________________________________________________________________________________
#@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 /home/cami/freesurfer/subjects/a1/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010 ________________________________________________________________________________
thanks ,
Antoine
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
mri_convert can be used to change the format, assuming it is standard dicom.
cheers Bruce
On Tue, 4 May 2010, Antoine Leflon wrote:
My files are dicoms and have no extension in the end of their name (IM_0465 for example) . Is it possible to change the format ?
thanks ,
Antoine
Talairach is about orientation. What is the format of your file? If it is .hdr and.img, it will fail.
On 4 May 2010 11:43, Antoine Leflon antoine1.leflon@etudiant.univ-lille1.fr wrote:
Hi all ,
I've used data from another Doctor , freesurfer told me the FOV was 330 so I put the flag -cw256 in the command recon-all but the Talairach just failed ... I got this error message . Can someone explain please ? ________________________________________________________________________________
#@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 /home/cami/freesurfer/subjects/a1/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010 ________________________________________________________________________________
thanks ,
Antoine
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
So I have to write : mri_convert -it dicom -i (first image) -o (name of the file) ? I did it outputing orig.mgz as usually before getting the error .
Antoine
________________________________________________________________________________ Bruce Fischl fischl@nmr.mgh.harvard.edu a écrit :
mri_convert can be used to change the format, assuming it is standard dicom.
cheers Bruce
On Tue, 4 May 2010, Antoine Leflon wrote:
My files are dicoms and have no extension in the end of their name (IM_0465 for example) . Is it possible to change the format ?
thanks ,
Antoine
Talairach is about orientation. What is the format of your file? If it is .hdr and.img, it will fail.
On 4 May 2010 11:43, Antoine Leflon antoine1.leflon@etudiant.univ-lille1.fr wrote:
Hi all ,
I've used data from another Doctor , freesurfer told me the FOV was 330 so I put the flag -cw256 in the command recon-all but the Talairach just failed ... I got this error message . Can someone explain please ? ________________________________________________________________________________
#@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 /home/cami/freesurfer/subjects/a1/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010 ________________________________________________________________________________
thanks ,
Antoine
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
usually you create an mri/orig/001.mgz, but you can also just point recon-all directly at the dicoms I think On Tue, 4 May 2010, Antoine Leflon wrote:
So I have to write : mri_convert -it dicom -i (first image) -o (name of the file) ? I did it outputing orig.mgz as usually before getting the error .
Antoine
Bruce Fischl fischl@nmr.mgh.harvard.edu a écrit :
mri_convert can be used to change the format, assuming it is standard dicom.
cheers Bruce
On Tue, 4 May 2010, Antoine Leflon wrote:
My files are dicoms and have no extension in the end of their name (IM_0465 for example) . Is it possible to change the format ?
thanks ,
Antoine
Talairach is about orientation. What is the format of your file? If it is .hdr and.img, it will fail.
On 4 May 2010 11:43, Antoine Leflon antoine1.leflon@etudiant.univ-lille1.fr wrote:
Hi all ,
I've used data from another Doctor , freesurfer told me the FOV was 330 so I put the flag -cw256 in the command recon-all but the Talairach just failed ... I got this error message . Can someone explain please ? ________________________________________________________________________________
#@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 /home/cami/freesurfer/subjects/a1/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010 ________________________________________________________________________________
thanks ,
Antoine
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
trying to make sense of this:
1. ran the initial recon-all to convert analyze to .mgz 2. then mri_convert on the DICOMs overwriting 001.mgz.
Now running the full autorecon-all to see what it looks like, but is seems that mri_convert added spatial cosine information to the 001.mgz. this was the output: ------------------------------ reading from 090725kc9b/e8845s5i1... Starting DICOMRead2() dcmfile = 090725kc9b/e8845s5i1 dcmdir = 090725kc9b Ref Series No = 5 Found 103 files, checking for dicoms Found 100 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 1.4 Vs: 0 0 1 Second Sorting Counting frames nframes = 1 nslices = 100 ndcmfiles = 100 PE Dir = ROW (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- jpegUID: --1.2.840.10008.1.2.4-- Loading pixel data TR=8.96, TE=1.79, TI=400.00, flip angle=15.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to FS090725kc9b/mri/orig/001.mgz...
On 4 May 2010 10:48, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
usually you create an mri/orig/001.mgz, but you can also just point recon-all directly at the dicoms I think
On Tue, 4 May 2010, Antoine Leflon wrote:
So I have to write : mri_convert -it dicom -i (first image) -o (name
of the file) ? I did it outputing orig.mgz as usually before getting the error .
Antoine
Bruce Fischl fischl@nmr.mgh.harvard.edu a écrit :
mri_convert can be used to change the format, assuming it is standard
dicom.
cheers Bruce
On Tue, 4 May 2010, Antoine Leflon wrote:
My files are dicoms and have no extension in the end of their name
(IM_0465 for example) . Is it possible to change the format ?
thanks ,
Antoine
Talairach is about orientation. What is the format of your file? If it is .hdr and.img, it will fail.
On 4 May 2010 11:43, Antoine Leflon antoine1.leflon@etudiant.univ-lille1.fr wrote:
Hi all ,
I've used data from another Doctor , freesurfer told me the FOV was 330 so I put the flag -cw256 in the command recon-all but the Talairach just failed ... I got this error message . Can someone explain please ?
#@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 /home/cami/freesurfer/subjects/a1/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010
thanks ,
Antoine
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
yes, but if the information is lost in analyze (which it is) then we are just guessing about orientations when we are converting back to .mgz On Tue, 4 May 2010, Ilana Hairston wrote:
trying to make sense of this:
- ran the initial recon-all to convert analyze to .mgz
- then mri_convert on the DICOMs overwriting 001.mgz.
Now running the full autorecon-all to see what it looks like, but is seems that mri_convert added spatial cosine information to the 001.mgz. this was the output:
reading from 090725kc9b/e8845s5i1... Starting DICOMRead2() dcmfile = 090725kc9b/e8845s5i1 dcmdir = 090725kc9b Ref Series No = 5 Found 103 files, checking for dicoms Found 100 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 1.4 Vs: 0 0 1 Second Sorting Counting frames nframes = 1 nslices = 100 ndcmfiles = 100 PE Dir = ROW (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- jpegUID: --1.2.840.10008.1.2.4-- Loading pixel data TR=8.96, TE=1.79, TI=400.00, flip angle=15.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to FS090725kc9b/mri/orig/001.mgz...
On 4 May 2010 10:48, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
usually you create an mri/orig/001.mgz, but you can also just point recon-all directly at the dicoms I think
On Tue, 4 May 2010, Antoine Leflon wrote:
So I have to write : mri_convert -it dicom -i (first image) -o (name
of the file) ? I did it outputing orig.mgz as usually before getting the error .
Antoine
Bruce Fischl fischl@nmr.mgh.harvard.edu a écrit :
mri_convert can be used to change the format, assuming it is standard
dicom.
cheers Bruce
On Tue, 4 May 2010, Antoine Leflon wrote:
My files are dicoms and have no extension in the end of their name
(IM_0465 for example) . Is it possible to change the format ?
thanks ,
Antoine
Talairach is about orientation. What is the format of your file? If it is .hdr and.img, it will fail.
On 4 May 2010 11:43, Antoine Leflon antoine1.leflon@etudiant.univ-lille1.fr wrote:
Hi all ,
I've used data from another Doctor , freesurfer told me the FOV was 330 so I put the flag -cw256 in the command recon-all but the Talairach just failed ... I got this error message . Can someone explain please ?
#@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 /home/cami/freesurfer/subjects/a1/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010
thanks ,
Antoine
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
With tkregister2 I've just noticed my problem was that the movable is not done properly because when I switch on it I see a white screen or something blurred . any one could help ?
Antoine leflon
________________________________________________________________________________ Bruce Fischl fischl@nmr.mgh.harvard.edu a écrit :
yes, but if the information is lost in analyze (which it is) then we are just guessing about orientations when we are converting back to .mgz On Tue, 4 May 2010, Ilana Hairston wrote:
trying to make sense of this:
- ran the initial recon-all to convert analyze to .mgz
- then mri_convert on the DICOMs overwriting 001.mgz.
Now running the full autorecon-all to see what it looks like, but is seems that mri_convert added spatial cosine information to the 001.mgz. this was the output:
reading from 090725kc9b/e8845s5i1... Starting DICOMRead2() dcmfile = 090725kc9b/e8845s5i1 dcmdir = 090725kc9b Ref Series No = 5 Found 103 files, checking for dicoms Found 100 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 1.4 Vs: 0 0 1 Second Sorting Counting frames nframes = 1 nslices = 100 ndcmfiles = 100 PE Dir = ROW (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- jpegUID: --1.2.840.10008.1.2.4-- Loading pixel data TR=8.96, TE=1.79, TI=400.00, flip angle=15.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to FS090725kc9b/mri/orig/001.mgz...
On 4 May 2010 10:48, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
usually you create an mri/orig/001.mgz, but you can also just point recon-all directly at the dicoms I think
On Tue, 4 May 2010, Antoine Leflon wrote:
So I have to write : mri_convert -it dicom -i (first image) -o (name
of the file) ? I did it outputing orig.mgz as usually before getting the error .
Antoine
Bruce Fischl fischl@nmr.mgh.harvard.edu a écrit :
mri_convert can be used to change the format, assuming it is standard
dicom.
cheers Bruce
On Tue, 4 May 2010, Antoine Leflon wrote:
My files are dicoms and have no extension in the end of their name
(IM_0465 for example) . Is it possible to change the format ?
thanks ,
Antoine
Talairach is about orientation. What is the format of your file? If it is .hdr and.img, it will fail.
On 4 May 2010 11:43, Antoine Leflon antoine1.leflon@etudiant.univ-lille1.fr wrote:
Hi all ,
I've used data from another Doctor , freesurfer told me the FOV was 330 so I put the flag -cw256 in the command recon-all but the Talairach just failed ... I got this error message . Can someone explain please ?
#@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 /home/cami/freesurfer/subjects/a1/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010
thanks ,
Antoine
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
can you get to the data before it got converted to analyze? If not, how will you ever know left from right? On Mon, 10 May 2010, Antoine Leflon wrote:
With tkregister2 I've just noticed my problem was that the movable is not done properly because when I switch on it I see a white screen or something blurred . any one could help ?
Antoine leflon
Bruce Fischl fischl@nmr.mgh.harvard.edu a écrit :
yes, but if the information is lost in analyze (which it is) then we are just guessing about orientations when we are converting back to .mgz On Tue, 4 May 2010, Ilana Hairston wrote:
trying to make sense of this:
- ran the initial recon-all to convert analyze to .mgz
- then mri_convert on the DICOMs overwriting 001.mgz.
Now running the full autorecon-all to see what it looks like, but is seems that mri_convert added spatial cosine information to the 001.mgz. this was the output:
reading from 090725kc9b/e8845s5i1... Starting DICOMRead2() dcmfile = 090725kc9b/e8845s5i1 dcmdir = 090725kc9b Ref Series No = 5 Found 103 files, checking for dicoms Found 100 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 1.4 Vs: 0 0 1 Second Sorting Counting frames nframes = 1 nslices = 100 ndcmfiles = 100 PE Dir = ROW (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- jpegUID: --1.2.840.10008.1.2.4-- Loading pixel data TR=8.96, TE=1.79, TI=400.00, flip angle=15.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to FS090725kc9b/mri/orig/001.mgz...
On 4 May 2010 10:48, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
usually you create an mri/orig/001.mgz, but you can also just point recon-all directly at the dicoms I think
On Tue, 4 May 2010, Antoine Leflon wrote:
So I have to write : mri_convert -it dicom -i (first image) -o (name
of the file) ? I did it outputing orig.mgz as usually before getting the error .
Antoine
Bruce Fischl fischl@nmr.mgh.harvard.edu a écrit :
mri_convert can be used to change the format, assuming it is standard
dicom.
cheers Bruce
On Tue, 4 May 2010, Antoine Leflon wrote:
My files are dicoms and have no extension in the end of their name > (IM_0465 for example) . Is it possible to change the format ? > > thanks , > > Antoine > > > > ________________________________________________________________________________ > > Talairach is about orientation. What is the format of your file? If it > is .hdr and.img, it will fail. > > > On 4 May 2010 11:43, Antoine Leflon > antoine1.leflon@etudiant.univ-lille1.fr wrote: > > Hi all , > > I've used data from another Doctor , freesurfer told me the FOV was > 330 so I put the flag -cw256 in the command recon-all but the > Talairach just failed ... > I got this error message . Can someone explain please ? > > ________________________________________________________________________________ > > #@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 > /home/cami/freesurfer/subjects/a1/mri > > talairach_afd -T 0.005 -xfm transforms/talairach.xfm > > ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm > ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) > Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC > 2009 i686 GNU/Linux > > recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010 > > ________________________________________________________________________________ > > thanks , > > Antoine > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Antoine Leflon -
Bruce Fischl -
Ilana Hairston