I think you can continue to use it like this. The --in_orientation behaves the way I expected, and it is nice that the --out_orientation behaves in this way since both situations can be handled. Thanks for showing us how to use our software:). doug

On 05/23/2012 01:50 PM, Clark Fisher wrote:

Thanks Doug,

In that case, since everything seems to be working as I want it to, I'm going to leave it as-is. Do you think that this is likely to change back to it's intended (pixel data ignoring) function in future versions, or can I continue to use it like this?

-Clark _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer