R: Re: mris resample: Command not found. This error is permanent after new patch download
Hi Zeke, thank you very much. I have download a file that named "unknown". I should rename it as "mris_resample"?
Stefano
----Messaggio originale---- Da: zkaufman@nmr.mgh.harvard.edu Data: 7-giu-2013 18.02 A: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] mris resample: Command not found. This error is permanent after new patch download
Stefano, step 4 should be:
"chmod +x $FREESURFER_HOME/bin/mris_resample"
When you do an "ls -l" in the $FREESURFER_HOME/bin directory, you need to see the to see the x's next to mris_resample just like you do with all the other files in that directory.
-Zeke
On 06/07/2013 11:49 AM, stdp82@virgilio.it wrote:
Hi list,
during trac-all -prep I have this error:
MRISregister() return, current seed 0 writing registered surface to /Applications/freesurfer/subjects/subject_prova/Diff03/surf/rh.cvs.tocvs_avg35.sphere.reg... expanding nbhd size to 1 mris_resample: Command not found. Darwin iMac
I have performed my analysis by the following steps (as recommended by Zeke and Lilla):
- download "unKnow" file (7.6 MB) at
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/mris_resample 2. put file in $FREESURFER/bin/ 4. chmod +x ~/mris_resample as recommended by Daniel (in the first test I did not use this command) 5. start trac-all -prep 6. ERROR (in inter-reg step)
What's happen?
Thank you very much,
Stefano
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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I dont know why your getting a file named "unknown". If you click this link you should be able to download a file called "mris_resample":
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/
Download it and place it in $FREESURFER_HOME/bin (Usually Applications/freesurfer/bin on Macs). Then make it executable by typing "chmod +x Applications/freesurfer/bin/mris_resample" on the command line.
-Zeke
If you go this this link
On 06/07/2013 12:09 PM, stdp82@virgilio.it wrote:
Hi Zeke, thank you very much.
I have download a file that named "unknown".
I should rename it as "mris_resample"?
Stefano
----Messaggio originale---- Da: zkaufman@nmr.mgh.harvard.edu Data: 7-giu-2013 18.02 A: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] mris resample: Command not found. This error is permanent after new patch download
Stefano, step 4 should be:
"chmod +x $FREESURFER_HOME/bin/mris_resample"
When you do an "ls -l" in the $FREESURFER_HOME/bin directory, you need to see the to see the x's next to mris_resample just like you do with all the other files in that directory.
-Zeke
On 06/07/2013 11:49 AM, stdp82@virgilio.it wrote:
Hi list,
during trac-all -prep I have this error:
MRISregister() return, current seed 0 writing registered surface to
/Applications/freesurfer/subjects/subject_prova/Diff03/surf/rh.cvs.tocvs_avg35.sphere.reg...
expanding nbhd size to 1 mris_resample: Command not found. Darwin iMac
I have performed my analysis by the following steps (as recommended by Zeke and Lilla):
- download "unKnow" file (7.6 MB) at
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/mris_resample
- put file in $FREESURFER/bin/
- chmod +x ~/mris_resample as recommended by Daniel (in the first test
I did not use this command) 5. start trac-all -prep 6. ERROR (in inter-reg step)
What's happen?
Thank you very much,
Stefano
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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