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Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1 Not sure what the issue is. Any help would be greatly appreciated. best AJ Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
External Email - Use Caution
Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionHi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1 Not sure what the issue is. Any help would be greatly appreciated. best AJ Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1RH8B-mspcxcCMTj4oKqYSr1GH59O3_OYduSDRxO5qS0AV2...
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Hi, I have python both versions of python installed: MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error: dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow? Thank you for your help. AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionCan you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionHi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1 Not sure what the issue is. Any help would be greatly appreciated. best AJ Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1thz0yltdMgkYjHj_yl7NWAgTjAKR3mIya3jP_-NSm1yrX-... https://secure-web.cisco.com/1RH8B-mspcxcCMTj4oKqYSr1GH59O3_OYduSDRxO5qS0AV24oBD5aWIo5z5zkVq11UOKmuWRg73LPL6ytL8nRQnhgqWgPYCTsEXlHi54o8I7pTV5x8yadd9zn3s4-dffSDIPttOT63H32kPqemaUJewqwqh7wsVfNVCe3KKoy1KRy7iIoHOWPMIl_GR0wAeyHOw2aDxFSUi6PLOE4HO_qfyaeNaahXjYsS3bN6k92bMiUciImOKIhwBB0-JKt-KSHZxcXcLq4Uj8dS1PecPhvUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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Hi AJ,
Freesurfer ships its own python distribution, so it doesn’t matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of AJ ajcns1969@gmail.com Date: Friday, April 16, 2021 at 11:56 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error installing tensorflow
External Email - Use Caution Hi, I have python both versions of python installed: MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error: dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow? Thank you for your help. AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S <vishnudaboss@gmail.commailto:vishnudaboss@gmail.com> wrote:
External Email - Use Caution Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote:
External Email - Use Caution Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1 Not sure what the issue is. Any help would be greatly appreciated. best AJ Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1RH8B-mspcxcCMTj4oKqYSr1GH59O3_OYduSDRxO5qS0AV24oBD5aWIo5z5zkVq11UOKmuWRg73LPL6ytL8nRQnhgqWgPYCTsEXlHi54o8I7pTV5x8yadd9zn3s4-dffSDIPttOT63H32kPqemaUJewqwqh7wsVfNVCe3KKoy1KRy7iIoHOWPMIl_GR0wAeyHOw2aDxFSUi6PLOE4HO_qfyaeNaahXjYsS3bN6k92bMiUciImOKIhwBB0-JKt-KSHZxcXcLq4Uj8dS1PecPhvUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1thz0yltdMgkYjHj_yl7NWAgTjAKR3mIya3jP_-NSm1yrX-vZ6JhjawzykczGn2QH-yZWySshjrV83ewzIv39MenpaT-wyBQ1IyccHBAqSeK7qe9kCYv0hqLHF8Jl8AOXuyxlbQgz7EEaD-Vh3D0-anBgWRHNQkRF8Rl0W7Wdr-ISk6O2knKd8StGriD11KOGguSV_P5GInqwWskvA6LkM4mEdjA5Ef6pJxtYpDvl4ixgADqF2Jkq7XwuKube-YGw72Hk3UuyF7hVEA5PxeZ4FQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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Thank you so much for your help. Here's the error: MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rl... Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6... Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7... (503kB) 100% |████████████████████████████████| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMax... (65kB) 100% |████████████████████████████████| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ie... Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-h... dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
Hi AJ,
Freesurfer ships its own python distribution, so it doesn’t matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < ajcns1969@gmail.com> *Date: *Friday, April 16, 2021 at 11:56 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] error installing tensorflow
External Email - Use Caution *Hi,
I have python both versions of python installed:
MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error:
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow?
Thank you for your help.
AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1
Not sure what the issue is. Any help would be greatly appreciated.
best
AJ
Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3
Expected in: /usr/lib/libSystem.B.dylib
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Hi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python
=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6
and try again?
On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you so much for your help. Here's the error: MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Xgk2gE4RIgC6_VOOURb5DzNEKxx0egN-mDv3JuslrSUFDX... https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1KtxtRjsrdq5RvnMxSAiekcBRdpEUWljfrKJkGjTvkYa7Vp... https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1qyFwJVU1W6XXMgvFqvwFkzk2WcgtkNCd6_yBD6yqJFVqo9... https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl (503kB) 100% |████████████████████████████████| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1TSEIrJ_qTP3JeBMjv1Qhkq4Pl5cyIjZFJ5HJ96VahOwdto... https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl (65kB) 100% |████████████████████████████████| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1CjmTISYwly-WLeB-BUyzaDu7yaIJaBQh6vL_1WKck9VCyh... https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1NWTTzBp0lCGtq_rKarEiSX7lxW4V7YojapR8sFtn-ADO4-... https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
Hi AJ,
Freesurfer ships its own python distribution, so it doesn’t matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < ajcns1969@gmail.com> *Date: *Friday, April 16, 2021 at 11:56 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] error installing tensorflow
External Email - Use Caution *Hi,
I have python both versions of python installed:
MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error:
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow?
Thank you for your help.
AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1
Not sure what the issue is. Any help would be greatly appreciated.
best
AJ
Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3
Expected in: /usr/lib/libSystem.B.dylib
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External Email - Use Caution
sorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6. many thanks aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionHi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python
=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6
and try again?
On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you so much for your help. Here's the error: MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1wwPzWSmj33HqYdebXpB94Mxz97lpbSG6V3sftjLn84p_gJ... https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1KfwevaV6mhlNO7qYXMtzztspKXLtVDQcTPGVeZ0PqLeIX1... https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1dudqbbYnYYhEjsbI-npCpFGMzpIKjZboKcIy94ECwqjzSd... https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl (503kB) 100% |████████████████████████████████| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1QJna5xdu9S16-pWp_ZVTNPSQ5fgx4rXiJTcC0s89a1ipwk... https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl (65kB) 100% |████████████████████████████████| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1jKiV5YFIMJuM5NnCRNXl0o1kssb4zctIxXPNO1PnZvJV8N... https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1V9J0JC9-nOwzYfGd1oAMP57uw36stsKP_HjuvVJwcxe8N_... https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
Hi AJ,
Freesurfer ships its own python distribution, so it doesn’t matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < ajcns1969@gmail.com> *Date: *Friday, April 16, 2021 at 11:56 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] error installing tensorflow
External Email - Use Caution *Hi,
I have python both versions of python installed:
MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error:
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow?
Thank you for your help.
AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1
Not sure what the issue is. Any help would be greatly appreciated.
best
AJ
Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3
Expected in: /usr/lib/libSystem.B.dylib
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External Email - Use Caution
1. Make sure you have conda installed 2. In your terminal, then
conda create -n myenv python=3.6 conda activate myenv
3. Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6. many thanks aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionHi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python
=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6
and try again?
On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you so much for your help. Here's the error: MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1lC38JXl_XpQbS-qcHxSm4Q9jqwcOGiQIP56TrdWCNLmj6C... https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/131b3FTDtlNu2NDQ70UpfLbsvILQUrtZ3dkGwJoyLFF_vlh... https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1B1qccajVpEsMmVW7UYufRRnfj5LKd8bnokNgScbjZ0LvYh... https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl (503kB) 100% |████████████████████████████████| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-lVze3bAcNbStWgN1KPyrHd9oEnsh9j5tanYP0p_-uyG3G... https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl (65kB) 100% |████████████████████████████████| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1gmegmPl3nbueOiinHOnIK85F7htKiljR9AYbRNQOlVBZC4... https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1CeK8qE2ys9JN9BlP3UEtEGBlnOL6Wjss5rPgUAmeDOwKel... https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
Hi AJ,
Freesurfer ships its own python distribution, so it doesn’t matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < ajcns1969@gmail.com> *Date: *Friday, April 16, 2021 at 11:56 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] error installing tensorflow
External Email - Use Caution *Hi,
I have python both versions of python installed:
MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error:
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow?
Thank you for your help.
AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1
Not sure what the issue is. Any help would be greatly appreciated.
best
AJ
Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3
Expected in: /usr/lib/libSystem.B.dylib
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External Email - Use Caution
thank you so much. I just installed conda. (base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2 Is myenv /Aplications/freesurfer/7.1.0 thank you. aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution
- Make sure you have conda installed
- In your terminal, then
conda create -n myenv python=3.6 conda activate myenv
- Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6. many thanks aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionHi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python
=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6
and try again?
On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you so much for your help. Here's the error: MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1yT5r5ADjPf-v2uZXvyrS2mEfKgjiqMH9Zoo8ycbzun2bFM... https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1IK-jpUzLR8GMNs7_gGITDXyHip-T6GYjQX9-WhaXkEJfUe... https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1bRizO-QQIp1jF8QL6AQZKU7cTnHxGspJ9RUYEh5xNnU6tQ... https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl (503kB) 100% |████████████████████████████████| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1uU3luBzOXWcrsO4E7RirxfEGsLzrC5l_0y2e1Hsio9PiS2... https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl (65kB) 100% |████████████████████████████████| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/10eWDjtpzb302wv1yIf5Dz55ChKWdgSUv3MPFv-uOXkFUol... https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1D2Qeo9U0TEIiQvUNtUfFe5ozq3I1Y29n8SRrWmpgUbGegP... https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < AHOOPES@mgh.harvard.edu> wrote:
Hi AJ,
Freesurfer ships its own python distribution, so it doesn’t matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < ajcns1969@gmail.com> *Date: *Friday, April 16, 2021 at 11:56 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] error installing tensorflow
External Email - Use Caution *Hi,
I have python both versions of python installed:
MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error:
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow?
Thank you for your help.
AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1
Not sure what the issue is. Any help would be greatly appreciated.
best
AJ
Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3
Expected in: /usr/lib/libSystem.B.dylib
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External Email - Use Caution
sorry, but I get the same error after conda create -n myenv python=3.6 conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVs... Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1RMFXu4xTNiyrlVHbqnFhCp06zcdACw-b85vgi-wBoMDkIy... Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qD... Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI4... Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9B... Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EU... Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4Fms... Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHj... Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAx... Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A... Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-y... dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote:
thank you so much. I just installed conda. (base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2 Is myenv /Aplications/freesurfer/7.1.0 thank you. aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution
- Make sure you have conda installed
- In your terminal, then
conda create -n myenv python=3.6 conda activate myenv
- Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6. many thanks aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionHi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python
=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6
and try again?
On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you so much for your help. Here's the error: MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Rpsaie_BV0W2-sUkVqmzkuVonlEfqma47wruswrvtrZyFL... https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qD... https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1ZKaQmxfgzmWYbsLsBdWufpldaO34PsWkQWSM_cR9_p0B88... https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl (503kB) 100% |████████████████████████████████| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/16q9BadqK3ewVdz80z5tNLqaz_2BkWVIfAhnfxjifBen6P3... https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl (65kB) 100% |████████████████████████████████| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4Fms... https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1BOoq4NKFVUnZbxEqtjUxIucAO51y3Qz-WGbxqOF_SZqQjw... https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < AHOOPES@mgh.harvard.edu> wrote:
Hi AJ,
Freesurfer ships its own python distribution, so it doesn’t matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < ajcns1969@gmail.com> *Date: *Friday, April 16, 2021 at 11:56 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] error installing tensorflow
External Email - Use Caution *Hi,
I have python both versions of python installed:
MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error:
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow?
Thank you for your help.
AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1
Not sure what the issue is. Any help would be greatly appreciated.
best
AJ
Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3
Expected in: /usr/lib/libSystem.B.dylib
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External Email - Use Caution
Maybe you want to check your .NET core version?
https://secure-web.cisco.com/1yA0JP579_nnFgIsajBEG82WAZ8ZXFFAjhKmNhWALkdw3hW...
On Sat, 17 Apr 2021, 09:33 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry, but I get the same error after conda create -n myenv python=3.6 conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1PYyai9yVcs6NF9QTeYJQKKzhmJD1Cj2tfunF8HGhyEkgUA... https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has 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https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1EBk9TVlx6QS48Wn5rGMlKxibxrhzDYPzryEZeCeqajafcV... https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1muVQgerE5VnU-XIzsYRP53RjVnT9XBp2EdO8ZrFWyBOGiO... https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1n2NuvjePG-ibCiSb1uvwToEP0pg9P8ZV9VKQDVFdWiiAUl... https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1USSptpfJwlATgX3HkwKiON9wRsMWo_0N7md5kctkVUkElN... https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1U7MYm70fOJfgkxzy3TmD-JGt1jvHHUjXPRQKJ8d1X18F8c... https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1XuZl0MlVWnWYvz4hspGhVwdYqSbdLXeS1oDjtrUizUs8CA... https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1sDzLWYTVGIqiv1rUxLNlVdZ3uA44_s_zebHZgUbo1_Iak2... https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote:
thank you so much. I just installed conda. (base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2 Is myenv /Aplications/freesurfer/7.1.0 thank you. aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution
- Make sure you have conda installed
- In your terminal, then
conda create -n myenv python=3.6 conda activate myenv
- Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6. many thanks aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionHi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python >=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6 and try again?
On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you so much for your help. Here's the error: MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1aT6TMPYAgHi82Ij05aSQR1s0z_ieBz8iRpMBWSqLTUnQs7... https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1krAkzV_96c49iEc6Vasp1HZYQfLmJj8EjzdNj7xoyCBW2I... https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1MVlUQ-Ec2wRYIJbB9VINJxS5hp_HoJKza0GkOLf8fDg3fi... https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl (503kB) 100% |████████████████████████████████| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1u4smwkHGzPs5sWjQr4tTV_TPPe6E3pySlR33YbSuyoz30m... https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl (65kB) 100% |████████████████████████████████| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1n2NuvjePG-ibCiSb1uvwToEP0pg9P8ZV9VKQDVFdWiiAUl... https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/15_huDJ98TkS0jwas7pcgbBrzULpDG9_ON0QBdz8TB-s99D... https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < AHOOPES@mgh.harvard.edu> wrote:
> Hi AJ, > > > > Freesurfer ships its own python distribution, so it doesn’t matter > what you have installed on your system. Can you let us know the specific > version of macOS you are using and send the full error report from pip? > > > > Thanks > > Andrew > > > > *From: *freesurfer-bounces@nmr.mgh.harvard.edu < > freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < > ajcns1969@gmail.com> > *Date: *Friday, April 16, 2021 at 11:56 AM > *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu > *Subject: *Re: [Freesurfer] error installing tensorflow > > * External Email - Use Caution * > > Hi, > > I have python both versions of python installed: > > MacBook-Pro-4:~ AJ$ python3 --version > Python 3.9.4 > MacBook-Pro-4:~ AJ$ python --version > Python 2.7.10 > > > > when installing fspython -m pip install tensorflow==1.13.1, I get > the error: > > dyld: Symbol not found: _utimensat > Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 > Expected in: /usr/lib/libSystem.B.dylib > > Abort trap: 6 > > > > Is the issue that freesurfer is looking for python3? I am not sure > how to get past this installation of tensorflow? > > Thank you for your help. > > AJ > > > > > > On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com > wrote: > > * External Email - Use Caution * > > Can you try downgrading to python 3.6 in a conda env? Python 3.7 > support only TF 2.0 and higher. > > > > On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote: > > * External Email - Use Caution * > > Hi, > > > > I am having trouble installing: fspython -m pip install > tensorflow==1.13.1 > > Not sure what the issue is. Any help would be greatly appreciated. > > best > > AJ > > Error message while installing: > > > dyld: lazy symbol binding failed: Symbol not found: _utimensat > Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 > Expected in: /usr/lib/libSystem.B.dylib > > dyld: Symbol not found: _utimensat > Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 > > Expected in: /usr/lib/libSystem.B.dylib > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1nTsvD-T0QbZolTNc06QYMW9tulNlz71vh6y0GC3FpoIfX7... > https://secure-web.cisco.com/1RH8B-mspcxcCMTj4oKqYSr1GH59O3_OYduSDRxO5qS0AV24oBD5aWIo5z5zkVq11UOKmuWRg73LPL6ytL8nRQnhgqWgPYCTsEXlHi54o8I7pTV5x8yadd9zn3s4-dffSDIPttOT63H32kPqemaUJewqwqh7wsVfNVCe3KKoy1KRy7iIoHOWPMIl_GR0wAeyHOw2aDxFSUi6PLOE4HO_qfyaeNaahXjYsS3bN6k92bMiUciImOKIhwBB0-JKt-KSHZxcXcLq4Uj8dS1PecPhvUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1nTsvD-T0QbZolTNc06QYMW9tulNlz71vh6y0GC3FpoIfX7... > https://secure-web.cisco.com/1thz0yltdMgkYjHj_yl7NWAgTjAKR3mIya3jP_-NSm1yrX-vZ6JhjawzykczGn2QH-yZWySshjrV83ewzIv39MenpaT-wyBQ1IyccHBAqSeK7qe9kCYv0hqLHF8Jl8AOXuyxlbQgz7EEaD-Vh3D0-anBgWRHNQkRF8Rl0W7Wdr-ISk6O2knKd8StGriD11KOGguSV_P5GInqwWskvA6LkM4mEdjA5Ef6pJxtYpDvl4ixgADqF2Jkq7XwuKube-YGw72Hk3UuyF7hVEA5PxeZ4FQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1nTsvD-T0QbZolTNc06QYMW9tulNlz71vh6y0GC3FpoIfX7... > https://secure-web.cisco.com/15Mi3hxeDDGFfvS_iDtAMO30EQeOm-pv_cV-Tx6Tvt0A-XUAU6tnccwVldP4WAeO7j2U-jezlH3TitYyMlaTcn1zsm8KuVK2Hr63TCws2ltzwsznvIHeMcR1aiNeENbpj3INJ0_LLxh3cUinqEwvaa9mdl-yOOFg8Sc6Ff9Va7pprtd8ua6EkrqQ0H9qR3wB2nXTpxmBzw_i8rdVKH-SAEQoLUNA75lgzBelEYkVnNzUZSI9lroVmv8KNK2GUF4-Dy6JPpW6kHtdYMBkiUmX1uA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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Thank you for your help. I think I'm getting closer to installing tensor flow. 1-as you suggested: installed .NET
(myenv) MacBook-Pro-4:~ AJ$ dotnet --info .NET SDK (reflecting any global.json): Version: 5.0.202 Commit: db7cc87d51
Runtime Environment: OS Name: Mac OS X OS Version: 10.15 OS Platform: Darwin RID: osx.10.15-x64 Base Path: /usr/local/share/dotnet/sdk/5.0.202/
Host (useful for support): Version: 5.0.5 Commit: 2f740adc14
.NET SDKs installed: 5.0.202 [/usr/local/share/dotnet/sdk]
.NET runtimes installed: Microsoft.AspNetCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.AspNetCore.App] Microsoft.NETCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.NETCore.App]
To install additional .NET runtimes or SDKs: https://secure-web.cisco.com/1OxYkG-3ytzUXBmp6iwhX6GTNcJNN9ebFt06hE_vUaohhHx...
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached https://secure-web.cisco.com/1CcF2y2q_HUgQ439LsQWK2Zie3vsvuCSIbTBcN6hC5UjggK... Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/19q916xZq2SAv6hsVsFXQmN4PFDz1V4xO9lrcrnOcAMRMlA... Collecting astor>=0.6.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1GZfov0hn7NAdkr_BPor4qry7T8qjxb6-lgnrP_Zlek817t... Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1n1Rm9tZILMvzB6BSjUNGK8m9OZ1sYvuLUAJFQ7JWxJc7Jr... Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1_zAg6j0XNd0Wu7pr0WG0qrX50QCFuLUvOZHbXSrC-M7Zdt... Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1JNkkdPQlC1yKIriRIhp7_J7gPdZnInNt0X_J4HID6QDVmS... Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1G9XEDCnxN1YTZpmYbtxq6mithjtSrUKzzlUKdp7sPNqOF2... Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1LSmKKFUaSRpBqvdN0yn79KX75bzxAKJUc_HFu0Y3uw5-PO... Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1Bga0sfCt7q_J4tj0ghWdpdwkA8E3_b3eFMc_2JHyD1Pkq1... Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3... Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO2... Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROn... Collecting werkzeug>=0.11.15 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1v1TKMfd_P6zYl4sVFufwS7yxOhly__VEN0VpBYzb6bwG2p... Collecting markdown>=2.6.8 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1-RFQTCupXzUz-iRFbxkS-NKtwbx7gnfDMr8q8symcKVSJC... Collecting h5py (from keras-applications>=1.0.6->tensorflow==1.13.1) Using cached https://secure-web.cisco.com/131qMp792FRLOMfDTnyQxnXhafBfq6wIOSxbjG3m1Fg_FdF... Collecting mock>=2.0.0 (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) Using cached https://secure-web.cisco.com/15zll9spxR9-xVODAIpHpRMEelwnB6CCFSqbDZakaxUxAM_... Collecting importlib-metadata; python_version < "3.8" (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1FXv2-9Xqlf6UO2-XDdnx4NHYzNmTe0FDsnAIkrRYlJq3_5... Collecting cached-property; python_version < "3.8" (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1uvvHIogRfkxVSdiM8Ew2bQJCSVH5zpq4zRqYs8e9-Shce4... Collecting zipp>=0.5 (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached https://secure-web.cisco.com/1S-t6Pq9hklSG64kPJ8JbEM6bQAlEI-AfoeKiveh3O7QuPl... Collecting typing-extensions>=3.6.4; python_version < "3.8" (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached https://secure-web.cisco.com/115oJckN0s7VM7FDbFcbn-TS618Z2BvhMz22XDzlZrFoxtm... Installing collected packages: keras-preprocessing, astor, wheel, absl-py, werkzeug, protobuf, grpcio, zipp, typing-extensions, importlib-metadata, markdown, tensorboard, gast, cached-property, h5py, keras-applications, mock, tensorflow-estimator, termcolor, tensorflow Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Applications/freesurfer/7.1.0/python/lib/python3.6/site-packages/keras_preprocessing' Consider using the `--user` option or check the permissions.
Not sure what the EnvironmentError is? The myenv was set up as: conda create -n myenv python=3.6 conda activate myenv
Many thanks.
AJ
On Fri, Apr 16, 2021 at 11:38 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionMaybe you want to check your .NET core version?
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On Sat, 17 Apr 2021, 09:33 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry, but I get the same error after conda create -n myenv python=3.6 conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1CcF2y2q_HUgQ439LsQWK2Zie3vsvuCSIbTBcN6hC5UjggK... https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has 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https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qDSltc0yDQeHeUNdpQb6xWEJmNcsc94e747p1zYGWBjD21VPp6A5JyBE472z3_9IsJSimgpwQsjJIr5FajJz0wtLKMvndRW6qIa2Vlr-e4OGId3NHIK-kauEd8DM6nvBGLFM8zKN0ofVgT4Y1PF6YR5ILpi3vobatS3Y5I6gOgTMpRE_M3dSQDQBVszLjLxGYtvREzN4DOmouqfpE3JEbicX7a4kNtNnhdVaSAwXnw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1JNkkdPQlC1yKIriRIhp7_J7gPdZnInNt0X_J4HID6QDVmS... https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Bga0sfCt7q_J4tj0ghWdpdwkA8E3_b3eFMc_2JHyD1Pkq1... https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1G9XEDCnxN1YTZpmYbtxq6mithjtSrUKzzlUKdp7sPNqOF2... https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1_zAg6j0XNd0Wu7pr0WG0qrX50QCFuLUvOZHbXSrC-M7Zdt... https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO2... https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1n1Rm9tZILMvzB6BSjUNGK8m9OZ1sYvuLUAJFQ7JWxJc7Jr... https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROn... https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3... https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote:
thank you so much. I just installed conda. (base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2 Is myenv /Aplications/freesurfer/7.1.0 thank you. aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution
- Make sure you have conda installed
- In your terminal, then
conda create -n myenv python=3.6 conda activate myenv
- Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6. many thanks aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionHi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python >=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6 and try again?
On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote:
> External Email - Use Caution > > Thank you so much for your help. > Here's the error: > MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 > Collecting tensorflow==1.15 > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1Cc8gZl7Zc-NYdompmCRqqP481ZundH16jNIGHmra2iMYWf... > https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl > Requirement already satisfied: six>=1.10.0 in > /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) > (1.14.0) > Collecting keras-applications>=1.0.8 (from tensorflow==1.15) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1LSmKKFUaSRpBqvdN0yn79KX75bzxAKJUc_HFu0Y3uw5-PO... > https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl > Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) > Downloading *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1VK89hAMFRdTETRRnbgKvsLKj88jFfSPxeAXeUUn8jEaWZK... > https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl > (503kB) > 100% |████████████████████████████████| 512kB 5.8MB/s > Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) > Downloading *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1fLhoT38snbHaYCBrPNLLVgByM_vAAlYbSYyUFjM2ZukZ_m... > https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl > (65kB) > 100% |████████████████████████████████| 71kB 13.9MB/s > Requirement already satisfied: numpy<2.0,>=1.16.0 in > /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) > (1.18.4) > Collecting absl-py>=0.7.0 (from tensorflow==1.15) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1_zAg6j0XNd0Wu7pr0WG0qrX50QCFuLUvOZHbXSrC-M7Zdt... > https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl > Collecting wrapt>=1.11.1 (from tensorflow==1.15) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1K53c5DetZJwgttDcQPKVePxlg5NXiOL9GwcQBIECyDd3Dk... > https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz > dyld: lazy symbol binding failed: Symbol not found: _utimensat > Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 > Expected in: /usr/lib/libSystem.B.dylib > > dyld: Symbol not found: _utimensat > Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 > Expected in: /usr/lib/libSystem.B.dylib > > Abort trap: 6 > > > > On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < > AHOOPES@mgh.harvard.edu> wrote: > >> Hi AJ, >> >> >> >> Freesurfer ships its own python distribution, so it doesn’t matter >> what you have installed on your system. Can you let us know the specific >> version of macOS you are using and send the full error report from pip? >> >> >> >> Thanks >> >> Andrew >> >> >> >> *From: *freesurfer-bounces@nmr.mgh.harvard.edu < >> freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < >> ajcns1969@gmail.com> >> *Date: *Friday, April 16, 2021 at 11:56 AM >> *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu >> *Subject: *Re: [Freesurfer] error installing tensorflow >> >> * External Email - Use Caution * >> >> Hi, >> >> I have python both versions of python installed: >> >> MacBook-Pro-4:~ AJ$ python3 --version >> Python 3.9.4 >> MacBook-Pro-4:~ AJ$ python --version >> Python 2.7.10 >> >> >> >> when installing fspython -m pip install tensorflow==1.13.1, I get >> the error: >> >> dyld: Symbol not found: _utimensat >> Referenced from: >> /Applications/freesurfer/7.1.0//python/bin/python3 >> Expected in: /usr/lib/libSystem.B.dylib >> >> Abort trap: 6 >> >> >> >> Is the issue that freesurfer is looking for python3? I am not sure >> how to get past this installation of tensorflow? >> >> Thank you for your help. >> >> AJ >> >> >> >> >> >> On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com >> wrote: >> >> * External Email - Use Caution * >> >> Can you try downgrading to python 3.6 in a conda env? Python 3.7 >> support only TF 2.0 and higher. >> >> >> >> On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote: >> >> * External Email - Use Caution * >> >> Hi, >> >> >> >> I am having trouble installing: fspython -m pip install >> tensorflow==1.13.1 >> >> Not sure what the issue is. Any help would be greatly appreciated. >> >> best >> >> AJ >> >> Error message while installing: >> >> >> dyld: lazy symbol binding failed: Symbol not found: _utimensat >> Referenced from: >> /Applications/freesurfer/7.1.0//python/bin/python3 >> Expected in: /usr/lib/libSystem.B.dylib >> >> dyld: Symbol not found: _utimensat >> Referenced from: >> /Applications/freesurfer/7.1.0//python/bin/python3 >> >> Expected in: /usr/lib/libSystem.B.dylib >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1YmFGFzR3EkueAiUI7cHRmsLfqhphljKmbbIy68jcG8QUGw... >> https://secure-web.cisco.com/1RH8B-mspcxcCMTj4oKqYSr1GH59O3_OYduSDRxO5qS0AV24oBD5aWIo5z5zkVq11UOKmuWRg73LPL6ytL8nRQnhgqWgPYCTsEXlHi54o8I7pTV5x8yadd9zn3s4-dffSDIPttOT63H32kPqemaUJewqwqh7wsVfNVCe3KKoy1KRy7iIoHOWPMIl_GR0wAeyHOw2aDxFSUi6PLOE4HO_qfyaeNaahXjYsS3bN6k92bMiUciImOKIhwBB0-JKt-KSHZxcXcLq4Uj8dS1PecPhvUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1YmFGFzR3EkueAiUI7cHRmsLfqhphljKmbbIy68jcG8QUGw... >> https://secure-web.cisco.com/1thz0yltdMgkYjHj_yl7NWAgTjAKR3mIya3jP_-NSm1yrX-vZ6JhjawzykczGn2QH-yZWySshjrV83ewzIv39MenpaT-wyBQ1IyccHBAqSeK7qe9kCYv0hqLHF8Jl8AOXuyxlbQgz7EEaD-Vh3D0-anBgWRHNQkRF8Rl0W7Wdr-ISk6O2knKd8StGriD11KOGguSV_P5GInqwWskvA6LkM4mEdjA5Ef6pJxtYpDvl4ixgADqF2Jkq7XwuKube-YGw72Hk3UuyF7hVEA5PxeZ4FQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1YmFGFzR3EkueAiUI7cHRmsLfqhphljKmbbIy68jcG8QUGw... >> https://secure-web.cisco.com/15Mi3hxeDDGFfvS_iDtAMO30EQeOm-pv_cV-Tx6Tvt0A-XUAU6tnccwVldP4WAeO7j2U-jezlH3TitYyMlaTcn1zsm8KuVK2Hr63TCws2ltzwsznvIHeMcR1aiNeENbpj3INJ0_LLxh3cUinqEwvaa9mdl-yOOFg8Sc6Ff9Va7pprtd8ua6EkrqQ0H9qR3wB2nXTpxmBzw_i8rdVKH-SAEQoLUNA75lgzBelEYkVnNzUZSI9lroVmv8KNK2GUF4-Dy6JPpW6kHtdYMBkiUmX1uA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1YmFGFzR3EkueAiUI7cHRmsLfqhphljKmbbIy68jcG8QUGw... > https://secure-web.cisco.com/1moGJSKrlAv__zKfFKWKLJ7M83P3Xw4JOHTCh6tbKrdBqMc1NsPo1m6V5H8ijpyI6MsP7ymnbc3VKfSSb8eJ2XrvGs2QEGHlvyI4QkAyVprpKW_uacCWiTURMFfN9eT-NLhF0SbFBBtgM-Y9gtk6kxPfoiNKEKtpx0oO4by6comkJhLK9quf6D1jx_Muqab0SvSIR-ViJ6TSMIdpjN-6lhbl-kFwVKlBaE5XU-m0LSmmre1T_NN_vIJsp-Vx6_IiefU9-oO-ofy1vaL2YrmngOw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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External Email - Use Caution
Can you try running the same command with the --user flag (admin permissions)?
On Sun, 18 Apr 2021, 00:40 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you for your help. I think I'm getting closer to installing tensor flow. 1-as you suggested: installed .NET
(myenv) MacBook-Pro-4:~ AJ$ dotnet --info .NET SDK (reflecting any global.json): Version: 5.0.202 Commit: db7cc87d51
Runtime Environment: OS Name: Mac OS X OS Version: 10.15 OS Platform: Darwin RID: osx.10.15-x64 Base Path: /usr/local/share/dotnet/sdk/5.0.202/
Host (useful for support): Version: 5.0.5 Commit: 2f740adc14
.NET SDKs installed: 5.0.202 [/usr/local/share/dotnet/sdk]
.NET runtimes installed: Microsoft.AspNetCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.AspNetCore.App] Microsoft.NETCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.NETCore.App]
To install additional .NET runtimes or SDKs: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1tkbMl0mPZQqQzBw9c54a62eeanWyn9rwD7qGm-q4Pi3zkx... https://secure-web.cisco.com/1OxYkG-3ytzUXBmp6iwhX6GTNcJNN9ebFt06hE_vUaohhHxw1akcr8GYz9dMHjSFShk3tayfQZ7hxie3xKH-wBvyKLXSa9eM-CAr65Rb6wh5-YVoUJXGOXkv4iphdq8gJ-S_GeccsJdQsQQCrKBO8J61KZaaODZYIS8Fdd1apGSdI_ZTKf0q6T3j4fL28ET4qHARQYQEEOybeBDgMpfwDjLgGCGigsLKBNRHQg-HZazd6jsjnIhYf99CVKn7tuO-_Bp48z3tNPP3csglBVECo6A/https%3A%2F%2Faka.ms%2Fdotnet-download
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1MzoOGlCred-NKgOVtiOjbPF-4Z6lUB-B-3ahxRnj0VEP6K... https://secure-web.cisco.com/1CcF2y2q_HUgQ439LsQWK2Zie3vsvuCSIbTBcN6hC5UjggKTpfnqciQfitLK94Cw98fB3eTE02Se_4X7d6r9EmPPV7qNBG8aUK5IfJhLgsgtwqzKTDAMS2CCLf1lAPHtv_Eog-Er9gKcR5lxyg_5TEbEuaflWB4bFmLf6DzFSsLTNXImvgbVCBYvOImkdU_mM9szbXcNtnPoAv8vw6aBbB4BEYHazwBK3237PS1k2EgU8rQ6_HniTkyf5Mo4bN467Kp7RseIKlAN95SbyVmtqOw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* 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https://secure-web.cisco.com/1GZfov0hn7NAdkr_BPor4qry7T8qjxb6-lgnrP_Zlek817tEFL5I8aHTYnVPpPhwz1iPH5v5euFFPVdhAgDP8t0nty-5xYaYlVVy3eZaAnApeRXXzOxja_8LManl_95FKy3-9_g5M4cDaz86Q4HN172Brd29Rx1zSptbSINonnMywazbMTXnZClepaikxo7_Smchhm_zzLOPTd8lVWvAkwwXO96tqSKi51aV0o0uJkAObAFL6xNH53G4NMXdMbw6KZFDWcD-gBrxKyN7kDwxgBw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fc3%2F88%2F97eef84f48fa04fbd6750e62dcceafba6c63c81b7ac1420856c8dcc0a3f9%2Fastor-0.8.1-py2.py3-none-any.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1d3XC78VPIvjyuBnI7EKiyntNUOCgMXRNNVZJLKGYal9PnA... https://secure-web.cisco.com/1n1Rm9tZILMvzB6BSjUNGK8m9OZ1sYvuLUAJFQ7JWxJc7JrBZmS9MvCJHNzr11J_SaFeBMxN2xlYJ3TF11qQcs1tIt57nERIhuAT-h0Zr4aGh6yG5_fmDP7jk_or3NdmRN5J2OEpp9j1hzSUeD9Mw1fABRHF8G9RaoPf16v-D-_WKuwmLIHW8ywMAo43aCFDP_7iwXqoSlpJkQp8EeLWTgpuQ5XuSepBQUsjgaxR_5cMlBnccgRVtXAj5LiYcQ3Xvn9_om4l3Ab7XQ5L6Bjun3Q/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1jkIAkhYK8tvMQkbpZ2aE4lr4R-vUUmStPUy2HMe0i9H2av... https://secure-web.cisco.com/1_zAg6j0XNd0Wu7pr0WG0qrX50QCFuLUvOZHbXSrC-M7ZdtSbn-ukmQKHeTL1_9k7WsUzhJRowGKXf9xEtEmm0G4rr7Eq46fQp4nwztAW-_IpyX59QymsvBC8x5e1rk7zej2UcHbM9l0oyH3K1NirbybXagQyM_n-Bsr9hoQOpSgAcL4Qp7tHtUWYyxA5ZquAhW84dV_VmxRwCf_hyhgFExlf18-LUQhF12xrLBARGd7Eb6XMd3PwUkVPqGAeEBnsIXdb3u7wEV7FKRovsKHQAQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1H6RERfP1K4sLTc7GjAtL_subCG4LN66dobud2G8GMY92IJ... 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https://secure-web.cisco.com/1LSmKKFUaSRpBqvdN0yn79KX75bzxAKJUc_HFu0Y3uw5-POpZ_8opu7YjQjGVMnUIA-1EvvbrxbBtg1yVinl31BNendPrHiwFvD1IRg0hNNHKH191IA7UEFhmt4qCMN0x-ktdd8q5vxsdjcRc5c1u-1UjeDRcEZHkZ0IsMOz4S8ENlefPVjyTYb9sj8Sq5eph25ca4qtsB_gF3SS7NF4eQDdePKmymCcAEyDJezt65Y5r1vHfCDUY413I1TkK1MuZPxzU1mep96u3RQBcf_XHAg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1nQZUP6AM-4DHn_fsBV6jRLQrMl7b6qz0o3322IVtGJH4wi... https://secure-web.cisco.com/1Bga0sfCt7q_J4tj0ghWdpdwkA8E3_b3eFMc_2JHyD1Pkq1feK6bI-Ym3bq8vVSRVRgKs64HrQvgLxEBwImuCaEwYCexNhbmDpmqvsxS9sPxtdTg8TbBMdvKao2ewXM6Qt5MNsSc3_zNBl8XyA0eYi6bh3_J2wpdfF-_OgtAHDrnm3QZVEydqLEZskVps60rHDoindqIfoN_mnMc8MVV4OfwYAJnz8zGeDaCgeBo7-D1ulneurMJwjkcr5b6n5ATqLvUwKi5F7i65fwal8ztNhA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1TP4s-VYKA-NytiRGGU0WfKSaXI2MMEdL06fsDR7NfqCJGQ... https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3RixYDotrwpQoQe1SD5oBkfS-TbVHpaQRNAIAG4GOI9Y923GTU8HsGNZP8Bep11vL_5F4EgdqBbliP2P_M9PFjcTnoUK6eHPCVlbfLnwsYrbaRBLI3HyZ_KbeF3YCSc7aoCuOl4HS54QjLuboHAX3uanjFEZyXFymZ7DMyHN6j_8ANrNyx6djG90bl1S9N-5Tfmm43xE-rBlvFhyBGIS6fLh25QzaYDIKgNflARtA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1FMG0vM-Sk96SSvwZAn_L_U6DxOSPIrXB1ojl2ektpHvxp4... https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO20VrWZ0eGJ2DItdgkqBvriGiyghm0tWtca_Kfo3IYeuQcUTrEGSxTVYqS-OZI2RVEfnxI8JP4QatZXz2MaLgipbm4c6X-whgbRjaCubKCSTXHJ4QGaluIskA3DOD8239-qEaCphWv5w6qw7Gm-Ba2muPAm9V1udyYNc02k_ptwo1VbahAeds4qlQ-gubY9aG_i7fxtZ5kjACKRRWpDbA8S6Iy01lcYGzNumK3bIlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1C8w1jLYebh_gI2_6mgc5uOGjzSCIhM-G7n43_Tzx5d5G5j... https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROnyI3SYPV_koPb3DEc1nGgoLTPLZIJizMfjmKf8VeWIZtd3gWldkMJOSOd677YDiWX3UgWGE5yXJY_-99FquKaRnC_UjGPXLMoZAzz13U4R79gp6EEzulMShhVnrpLtZfyzpeYJRB46SmFiN0cmv07E5xmP2LpWVvfN72WrgrM9tETxg0Jwr5Tdgf9YdwkCk1LQbWop03XdmewsbKCUGo1cmD5Jxzge27FE6Gmc5ng/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting werkzeug>=0.11.15 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1fH9EFHB28CCir4oLG0_GQHGKe5AXcZUzplisEJucdbpP8z... https://secure-web.cisco.com/1v1TKMfd_P6zYl4sVFufwS7yxOhly__VEN0VpBYzb6bwG2prRecRPkdyr00F-t2RabUK6JiQYoFF64iNwnVK0AABdBXjKXjeEMwkGq156zlnHKd01qkAOXC_ZdOWYTNyaXJx4MU5yxLSSdDxbMeV9gPNN0ccQZMDQRGg51scpJQ9m2OWY1LBwgzYzG34GcUf4AUr3jDknKDuL609eDXBvacVpr9WqVUxgwXD6ZH8GSgBGVUHjV7ZIuLCt2IC0W92ZSOaz6I5BrErVTWHQ7vzUvg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fcc%2F94%2F5f7079a0e00bd6863ef8f1da638721e9da21e5bacee597595b318f71d62e%2FWerkzeug-1.0.1-py2.py3-none-any.whl Collecting markdown>=2.6.8 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1YEK0x5A5e1HOJSH3_kJrlUVAOIs_LFFq48uSSiOHz9BvIP... https://secure-web.cisco.com/1-RFQTCupXzUz-iRFbxkS-NKtwbx7gnfDMr8q8symcKVSJCrXUwd_5opYJf4UJN6ql9vPLtWdOq_i1zDgfSCUEo0WCAUgJD671jtmMda6rCAVKK20tGULgybsilZu5Sf_khFfAkdixf76FNcS48MqkSJriH2XaA16A_ekkMdO8Zue-j3tTpgWGPqYS8jK0IbgP_uMay4FwFgfyph1rr0PED1yKTtyXzG8Oxg-Y8sa4ArgWCRCclnySKmfLLxH-FdpRRplyPVcH22nx4on4adqBg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F6e%2F33%2F1ae0f71395e618d6140fbbc9587cc3156591f748226075e0f7d6f9176522%2FMarkdown-3.3.4-py3-none-any.whl Collecting h5py (from keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1E2mYvuB_WhSWnWhHvf7mVjhJO916Tqwlzj-ubgjc629340... https://secure-web.cisco.com/131qMp792FRLOMfDTnyQxnXhafBfq6wIOSxbjG3m1Fg_FdFGhK52RjDXV7ZjWXftwpJPiylzWsk_BGg8fhR4bcyM-U2rtn4sficr1zdYMyttrr0LhGabXo94bNQlRm5BWzWmuIpkrzt-J6xMlCqdWtUVBEwg4elmfJiURUf-lcZQIf9AfBWpyL5lKFhmZDWRtLpykkVkFGrfKNEbrVskuiFnYL0AtLFkCHbRJNz1JQU1whng4AjyIe40AC5RALeHO776KePBsGP5RO_tXgoP-Fg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F34%2F8b%2F24796b39111b4a235051003986b1c6d43e8b9699ec5936b642231c101c40%2Fh5py-3.1.0-cp36-cp36m-macosx_10_9_x86_64.whl Collecting mock>=2.0.0 (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zP8imJcRpHsIOGMzdKZ12MzERwlJMoJWNEsCTejmkmhrEC... https://secure-web.cisco.com/15zll9spxR9-xVODAIpHpRMEelwnB6CCFSqbDZakaxUxAM_3tW-BnGJ0ZQX9otv-1XbeiDYxLCP2KpwkR5xkU8HdIj02rQFgakZOKZCWCA1WvEzpUPC2IA9wOTQhHcfdVMnVC-TbdBD7vmHXEX5_y7sWv8LdRCYmvBfWtKsnzm9-ghaV8CD6F9gPaTWwUmWSpUW9i3JlBNSpWSnqalGDMKhNFg0kIZiZPSND3Huq4Ye0fOG-ku-6BmjvtT_2s5IVWQyjN5WenPbn-raMxoq3wlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F5c%2F03%2Fb7e605db4a57c0f6fba744b11ef3ddf4ddebcada35022927a2b5fc623fdf%2Fmock-4.0.3-py3-none-any.whl Collecting importlib-metadata; python_version < "3.8" (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1FgkHUPnpSsyqs4xGIcPmPH-9LvXXPm1Gvl4Wq21pvAYfps... https://secure-web.cisco.com/1FXv2-9Xqlf6UO2-XDdnx4NHYzNmTe0FDsnAIkrRYlJq3_5BvYaMKG6oBGgWGELXLtD0SkDqoAN06QPlCETT2WgON2nNFxfWBRk6UPuzjBlSwDhC1VzQ36_IUQCH4es1hDAmLJuV7kLvGhonP4DcGCFWuB-xGfFrg5NDamFEW6zDG0vCq-BOJHtn2uVP_KiMBXtRt8jylBov-JqQfDlsKgapZVcMZe3JsadUVNZs36GJqlsgyCAyFZ136Ko7-KJYp3W_CAdsGWJwdqwywnYFhxQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F52%2Fd0%2Fbdb31463f2d9ca111e39b268518e9baa3542ef73ca449b711a7b4da69764%2Fimportlib_metadata-3.10.1-py3-none-any.whl Collecting cached-property; python_version < "3.8" (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/16HG002og3p1Bi3F1KTI8mXbySthI2zTO51Yrxqasz1ocpx... https://secure-web.cisco.com/1uvvHIogRfkxVSdiM8Ew2bQJCSVH5zpq4zRqYs8e9-Shce4jYvPLEwk-6h57FBvpfX3eW9Tp6wb584GNYcnmYsYg3moRoiHdMPvxHGDvsyLtL8qqWyrX0AtVn6ynnZKguvNUcMEiLbovgH4qzAjipahQ-pfQ0rZB1FKqvj2KIhXZJ6KWkhvpTjClapxLQTTeSSiiPYUCU4EHG6yfe9oyzZEtrP9PX8533Wn0F-mhvxmyLJIDrU7T98FU2ij_W4lugOEuE8rl3n5VmAW-lFZevLA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F48%2F19%2Ff2090f7dad41e225c7f2326e4cfe6fff49e57dedb5b53636c9551f86b069%2Fcached_property-1.5.2-py2.py3-none-any.whl Collecting zipp>=0.5 (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/16XUhWU6fEUdeaqZevvTnA9lkBinv0GhOuQ595f4_VrOrUx... https://secure-web.cisco.com/1S-t6Pq9hklSG64kPJ8JbEM6bQAlEI-AfoeKiveh3O7QuPljk4xBmeKFBLIGQtnpYi1Q2vCDvaqHUbiQXPycUQqWGAxdO8uq0ZXU_PAfBmVUYYvVdbHix80xsTsZQ4Vb9q-HQLUk1JbFJAllIGU5nIt7wYq-ngRR8gwGw7kBoOqclSjBvtDJVNsE-1avMSDIr9pO8WoSaj5ITN8-G_q43AvMWXBwkS--tIBYIe46FIpxqJygnxxEWG5MvSlhp1tU2AW31_YLCbARXpbGOyZd4sQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F8c%2F715c54e9e34c0c4820f616a913a7de3337d0cd79074dd1bed4dd840f16ae%2Fzipp-3.4.1-py3-none-any.whl Collecting typing-extensions>=3.6.4; python_version < "3.8" (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1WIeESoY0-7347DipYsSqa_hBEmh76h7U3YDEE4SMh3Ldg9... https://secure-web.cisco.com/115oJckN0s7VM7FDbFcbn-TS618Z2BvhMz22XDzlZrFoxtmEHS1sdgy2S0GUwRnyY0ivKAXWmMmrDowMvD4_fHwknWsW2zaoR6gPoMWi4nHISV1DY-3xzJ4KqFKkdycAC-YRBGAGXqxb5VS9T2dp_1KcQG9NILrdgO7oKpKb8VTyON3M7AVCyMPO3sHHUY3bhW_t0cOwv0YmP7eFV1l5mk9ZXI1cbodGu3qLBSm40c6oSk9arPUkb848MkRUMF0MkjjJcOHsGrm7wQ4aax-AdHA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F60%2F7a%2Fe881b5abb54db0e6e671ab088d079c57ce54e8a01a3ca443f561ccadb37e%2Ftyping_extensions-3.7.4.3-py3-none-any.whl Installing collected packages: keras-preprocessing, astor, wheel, absl-py, werkzeug, protobuf, grpcio, zipp, typing-extensions, importlib-metadata, markdown, tensorboard, gast, cached-property, h5py, keras-applications, mock, tensorflow-estimator, termcolor, tensorflow Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Applications/freesurfer/7.1.0/python/lib/python3.6/site-packages/keras_preprocessing' Consider using the `--user` option or check the permissions.
Not sure what the EnvironmentError is? The myenv was set up as: conda create -n myenv python=3.6 conda activate myenv
Many thanks.
AJ
On Fri, Apr 16, 2021 at 11:38 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionMaybe you want to check your .NET core version?
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1R6knRtMd0KKoX3mdJ41aMOhUITxzKh93LES5EEkoRIE1_D... https://secure-web.cisco.com/1yA0JP579_nnFgIsajBEG82WAZ8ZXFFAjhKmNhWALkdw3hWQHGEcHyIQn9f2Zja-3VCQLCFm9O0vC7xCZ_M4GHuJonItW4QLqSd4D3b7dVWPWb8b-NWodb-k9cpmqMdEGAH3pZnQ3hXuGkzltwOzrIGPZTkE_T-1ht-5GhHd-1bwYhz42vrq_kA885Iex-1TOugC-ktILkE7eYWn-UWDgTvloa6sK6PzcGTuCKH2N64-fOBxvnMYUo0COaP98cZrVV9ryDBJqEZBKm0-XQigEsA/https%3A%2F%2Fgithub.com%2Fdotnet%2Fcore%2Fissues%2F4005
On Sat, 17 Apr 2021, 09:33 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry, but I get the same error after conda create -n myenv python=3.6 conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1MzoOGlCred-NKgOVtiOjbPF-4Z6lUB-B-3ahxRnj0VEP6K... https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1H_Io_qspeT0sUPa1hJza5MTysifcEOPEAzF9W7sq-JvIMY... https://secure-web.cisco.com/1RMFXu4xTNiyrlVHbqnFhCp06zcdACw-b85vgi-wBoMDkIycA4pXi8xb5Wd97atgVnp5x1tGG6PrqPcH-AtQi2iMfbdY1Hw2Sh4Z52sW5U1LhBKxPYiFJmB5wwdVjaU0Rx-TmaoQbeLMVz8tugeVp4e8dC8_kMIw50hrEk3rEpbLBo0TFyMSHe_Jn2n63vW6ywfiywtr0B0rzMLTHwI2e9NvDZRzP8YZtbnnN2N86u-WsnyGSK2flOryf3YPYw5tM4zQ3ADoIs_hoKasrRLCYmQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1oYsViChyTYqhzBUhO2UqQPOF2EaM1kZQSYp8gLWj9ojWmA... https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qDSltc0yDQeHeUNdpQb6xWEJmNcsc94e747p1zYGWBjD21VPp6A5JyBE472z3_9IsJSimgpwQsjJIr5FajJz0wtLKMvndRW6qIa2Vlr-e4OGId3NHIK-kauEd8DM6nvBGLFM8zKN0ofVgT4Y1PF6YR5ILpi3vobatS3Y5I6gOgTMpRE_M3dSQDQBVszLjLxGYtvREzN4DOmouqfpE3JEbicX7a4kNtNnhdVaSAwXnw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1H6RERfP1K4sLTc7GjAtL_subCG4LN66dobud2G8GMY92IJ... https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1nQZUP6AM-4DHn_fsBV6jRLQrMl7b6qz0o3322IVtGJH4wi... https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1CxDddQVl17YYZ2_77e75-A8XmLL-DP9HvcthRoYhx_OOmG... https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1jkIAkhYK8tvMQkbpZ2aE4lr4R-vUUmStPUy2HMe0i9H2av... https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1FMG0vM-Sk96SSvwZAn_L_U6DxOSPIrXB1ojl2ektpHvxp4... https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1d3XC78VPIvjyuBnI7EKiyntNUOCgMXRNNVZJLKGYal9PnA... https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1C8w1jLYebh_gI2_6mgc5uOGjzSCIhM-G7n43_Tzx5d5G5j... https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1TP4s-VYKA-NytiRGGU0WfKSaXI2MMEdL06fsDR7NfqCJGQ... https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote:
thank you so much. I just installed conda. (base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2 Is myenv /Aplications/freesurfer/7.1.0 thank you. aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution
- Make sure you have conda installed
- In your terminal, then
conda create -n myenv python=3.6 conda activate myenv
- Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6. many thanks aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com wrote:
> External Email - Use Caution > > Hi AJ, > > So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. > Python >=3.7 only supports TF2. Can you try creating a conda venv with > Python 3.6 and try again? > > On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote: > >> External Email - Use Caution >> >> Thank you so much for your help. >> Here's the error: >> MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 >> Collecting tensorflow==1.15 >> Using cached *MailScanner has detected a possible fraud attempt >> from "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1Np2tRJNVxhzF0ybiFJr7tdyFYmq7vKm9XDP5C12CETDGzz... >> https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl >> Requirement already satisfied: six>=1.10.0 in >> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >> (1.14.0) >> Collecting keras-applications>=1.0.8 (from tensorflow==1.15) >> Using cached *MailScanner has detected a possible fraud attempt >> from "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1oYsViChyTYqhzBUhO2UqQPOF2EaM1kZQSYp8gLWj9ojWmA... >> https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl >> Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) >> Downloading *MailScanner has detected a possible fraud attempt >> from "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1awuHGqF4jk3Zxbrtq6rq54k4MSpboYZJl8hN2x8U2DZ-Wb... >> https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl >> (503kB) >> 100% |████████████████████████████████| 512kB 5.8MB/s >> Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) >> Downloading *MailScanner has detected a possible fraud attempt >> from "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/115OSyt4aZMsiDEzrb3mFxgEXqBvljmNWYcIyqJ29zOSQTY... >> https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl >> (65kB) >> 100% |████████████████████████████████| 71kB 13.9MB/s >> Requirement already satisfied: numpy<2.0,>=1.16.0 in >> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >> (1.18.4) >> Collecting absl-py>=0.7.0 (from tensorflow==1.15) >> Using cached *MailScanner has detected a possible fraud attempt >> from "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1jkIAkhYK8tvMQkbpZ2aE4lr4R-vUUmStPUy2HMe0i9H2av... >> https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl >> Collecting wrapt>=1.11.1 (from tensorflow==1.15) >> Using cached *MailScanner has detected a possible fraud attempt >> from "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1uY5m3YWF_F4vGz30JDmflN2Np_9bq1SbbCQsEVGovgJ-5y... >> https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz >> dyld: lazy symbol binding failed: Symbol not found: _utimensat >> Referenced from: >> /Applications/freesurfer/7.1.0//python/bin/python3 >> Expected in: /usr/lib/libSystem.B.dylib >> >> dyld: Symbol not found: _utimensat >> Referenced from: >> /Applications/freesurfer/7.1.0//python/bin/python3 >> Expected in: /usr/lib/libSystem.B.dylib >> >> Abort trap: 6 >> >> >> >> On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < >> AHOOPES@mgh.harvard.edu> wrote: >> >>> Hi AJ, >>> >>> >>> >>> Freesurfer ships its own python distribution, so it doesn’t matter >>> what you have installed on your system. Can you let us know the specific >>> version of macOS you are using and send the full error report from pip? >>> >>> >>> >>> Thanks >>> >>> Andrew >>> >>> >>> >>> *From: *freesurfer-bounces@nmr.mgh.harvard.edu < >>> freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < >>> ajcns1969@gmail.com> >>> *Date: *Friday, April 16, 2021 at 11:56 AM >>> *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu >>> *Subject: *Re: [Freesurfer] error installing tensorflow >>> >>> * External Email - Use Caution * >>> >>> Hi, >>> >>> I have python both versions of python installed: >>> >>> MacBook-Pro-4:~ AJ$ python3 --version >>> Python 3.9.4 >>> MacBook-Pro-4:~ AJ$ python --version >>> Python 2.7.10 >>> >>> >>> >>> when installing fspython -m pip install tensorflow==1.13.1, I get >>> the error: >>> >>> dyld: Symbol not found: _utimensat >>> Referenced from: >>> /Applications/freesurfer/7.1.0//python/bin/python3 >>> Expected in: /usr/lib/libSystem.B.dylib >>> >>> Abort trap: 6 >>> >>> >>> >>> Is the issue that freesurfer is looking for python3? I am not >>> sure how to get past this installation of tensorflow? >>> >>> Thank you for your help. >>> >>> AJ >>> >>> >>> >>> >>> >>> On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com >>> wrote: >>> >>> * External Email - Use Caution * >>> >>> Can you try downgrading to python 3.6 in a conda env? Python 3.7 >>> support only TF 2.0 and higher. >>> >>> >>> >>> On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote: >>> >>> * External Email - Use Caution * >>> >>> Hi, >>> >>> >>> >>> I am having trouble installing: fspython -m pip install >>> tensorflow==1.13.1 >>> >>> Not sure what the issue is. Any help would be greatly appreciated. >>> >>> best >>> >>> AJ >>> >>> Error message while installing: >>> >>> >>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>> Referenced from: >>> /Applications/freesurfer/7.1.0//python/bin/python3 >>> Expected in: /usr/lib/libSystem.B.dylib >>> >>> dyld: Symbol not found: _utimensat >>> Referenced from: >>> /Applications/freesurfer/7.1.0//python/bin/python3 >>> >>> Expected in: /usr/lib/libSystem.B.dylib >>> >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1f7O27te6_UOTpNeI_HJbjCyerTIRX2VmFg2lP0pOAunova... >>> https://secure-web.cisco.com/1RH8B-mspcxcCMTj4oKqYSr1GH59O3_OYduSDRxO5qS0AV24oBD5aWIo5z5zkVq11UOKmuWRg73LPL6ytL8nRQnhgqWgPYCTsEXlHi54o8I7pTV5x8yadd9zn3s4-dffSDIPttOT63H32kPqemaUJewqwqh7wsVfNVCe3KKoy1KRy7iIoHOWPMIl_GR0wAeyHOw2aDxFSUi6PLOE4HO_qfyaeNaahXjYsS3bN6k92bMiUciImOKIhwBB0-JKt-KSHZxcXcLq4Uj8dS1PecPhvUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1f7O27te6_UOTpNeI_HJbjCyerTIRX2VmFg2lP0pOAunova... >>> https://secure-web.cisco.com/1thz0yltdMgkYjHj_yl7NWAgTjAKR3mIya3jP_-NSm1yrX-vZ6JhjawzykczGn2QH-yZWySshjrV83ewzIv39MenpaT-wyBQ1IyccHBAqSeK7qe9kCYv0hqLHF8Jl8AOXuyxlbQgz7EEaD-Vh3D0-anBgWRHNQkRF8Rl0W7Wdr-ISk6O2knKd8StGriD11KOGguSV_P5GInqwWskvA6LkM4mEdjA5Ef6pJxtYpDvl4ixgADqF2Jkq7XwuKube-YGw72Hk3UuyF7hVEA5PxeZ4FQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1f7O27te6_UOTpNeI_HJbjCyerTIRX2VmFg2lP0pOAunova... >>> https://secure-web.cisco.com/15Mi3hxeDDGFfvS_iDtAMO30EQeOm-pv_cV-Tx6Tvt0A-XUAU6tnccwVldP4WAeO7j2U-jezlH3TitYyMlaTcn1zsm8KuVK2Hr63TCws2ltzwsznvIHeMcR1aiNeENbpj3INJ0_LLxh3cUinqEwvaa9mdl-yOOFg8Sc6Ff9Va7pprtd8ua6EkrqQ0H9qR3wB2nXTpxmBzw_i8rdVKH-SAEQoLUNA75lgzBelEYkVnNzUZSI9lroVmv8KNK2GUF4-Dy6JPpW6kHtdYMBkiUmX1uA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1f7O27te6_UOTpNeI_HJbjCyerTIRX2VmFg2lP0pOAunova... >> https://secure-web.cisco.com/1moGJSKrlAv__zKfFKWKLJ7M83P3Xw4JOHTCh6tbKrdBqMc1NsPo1m6V5H8ijpyI6MsP7ymnbc3VKfSSb8eJ2XrvGs2QEGHlvyI4QkAyVprpKW_uacCWiTURMFfN9eT-NLhF0SbFBBtgM-Y9gtk6kxPfoiNKEKtpx0oO4by6comkJhLK9quf6D1jx_Muqab0SvSIR-ViJ6TSMIdpjN-6lhbl-kFwVKlBaE5XU-m0LSmmre1T_NN_vIJsp-Vx6_IiefU9-oO-ofy1vaL2YrmngOw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1f7O27te6_UOTpNeI_HJbjCyerTIRX2VmFg2lP0pOAunova... > https://secure-web.cisco.com/1gxEq9RTXzjJyTM_I59m3P05jiMMmW-zjC4xlr5PqLfAkeeUttgmOijncAOf6omd2IK_nL_SCfnwu0l7rVodyvBZQ8UR8_jO7A0_hNudIRo_n6px8Cy6W_YRwJlkUWnN6TGyomYxaSw1-0hAdJcF0FBtACHeM1VCtO9zgmA-tirhiSifmfSkDpkY3CBHbr4gQ-Y1V-KRsopE113rvx0b3fhy2CvB3VrM8c523XSvgJVmFTcpUT7WqCLQg5Nf_k86e4HMY3uUfCmO3EcWiNL6mIA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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External Email - Use Caution
Thank you for your response.
Would that script be fspython -m pip install tensorflow==1.13.1 --admin permissions
On Sat, Apr 17, 2021, 20:33 Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionCan you try running the same command with the --user flag (admin permissions)?
On Sun, 18 Apr 2021, 00:40 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you for your help. I think I'm getting closer to installing tensor flow. 1-as you suggested: installed .NET
(myenv) MacBook-Pro-4:~ AJ$ dotnet --info .NET SDK (reflecting any global.json): Version: 5.0.202 Commit: db7cc87d51
Runtime Environment: OS Name: Mac OS X OS Version: 10.15 OS Platform: Darwin RID: osx.10.15-x64 Base Path: /usr/local/share/dotnet/sdk/5.0.202/
Host (useful for support): Version: 5.0.5 Commit: 2f740adc14
.NET SDKs installed: 5.0.202 [/usr/local/share/dotnet/sdk]
.NET runtimes installed: Microsoft.AspNetCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.AspNetCore.App] Microsoft.NETCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.NETCore.App]
To install additional .NET runtimes or SDKs: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1KfctQ_HWelQ3RGl0Ly1TOr0k2Opwn3IfNkUSeZo6Xd7AiI... https://secure-web.cisco.com/1OxYkG-3ytzUXBmp6iwhX6GTNcJNN9ebFt06hE_vUaohhHxw1akcr8GYz9dMHjSFShk3tayfQZ7hxie3xKH-wBvyKLXSa9eM-CAr65Rb6wh5-YVoUJXGOXkv4iphdq8gJ-S_GeccsJdQsQQCrKBO8J61KZaaODZYIS8Fdd1apGSdI_ZTKf0q6T3j4fL28ET4qHARQYQEEOybeBDgMpfwDjLgGCGigsLKBNRHQg-HZazd6jsjnIhYf99CVKn7tuO-_Bp48z3tNPP3csglBVECo6A/https%3A%2F%2Faka.ms%2Fdotnet-download
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1YsBo_hu9Vb5gNw1SSTPEnDCl6wuWgXwfvRHdBOgEoZkSOF... https://secure-web.cisco.com/1CcF2y2q_HUgQ439LsQWK2Zie3vsvuCSIbTBcN6hC5UjggKTpfnqciQfitLK94Cw98fB3eTE02Se_4X7d6r9EmPPV7qNBG8aUK5IfJhLgsgtwqzKTDAMS2CCLf1lAPHtv_Eog-Er9gKcR5lxyg_5TEbEuaflWB4bFmLf6DzFSsLTNXImvgbVCBYvOImkdU_mM9szbXcNtnPoAv8vw6aBbB4BEYHazwBK3237PS1k2EgU8rQ6_HniTkyf5Mo4bN467Kp7RseIKlAN95SbyVmtqOw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* 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https://secure-web.cisco.com/1GZfov0hn7NAdkr_BPor4qry7T8qjxb6-lgnrP_Zlek817tEFL5I8aHTYnVPpPhwz1iPH5v5euFFPVdhAgDP8t0nty-5xYaYlVVy3eZaAnApeRXXzOxja_8LManl_95FKy3-9_g5M4cDaz86Q4HN172Brd29Rx1zSptbSINonnMywazbMTXnZClepaikxo7_Smchhm_zzLOPTd8lVWvAkwwXO96tqSKi51aV0o0uJkAObAFL6xNH53G4NMXdMbw6KZFDWcD-gBrxKyN7kDwxgBw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fc3%2F88%2F97eef84f48fa04fbd6750e62dcceafba6c63c81b7ac1420856c8dcc0a3f9%2Fastor-0.8.1-py2.py3-none-any.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1StCA7dctixgkt7dhWXTCfsnSkvBqqp1Z_eayBmGzWNfkwc... 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https://secure-web.cisco.com/1G9XEDCnxN1YTZpmYbtxq6mithjtSrUKzzlUKdp7sPNqOF2juoi7YDowWfrC1UIWvrBLmJJxGMQY8n9fDrkR1LmwMMeVXd7k4qPd3uDCB5eAfLaHJF3ExaG1ykMjX2gDbHXQWwsijoqkCLddbbOv3U5Adsh5PU5Lmkp8JbTrp9VSy0Q5xWWplvncNv3L-j0Ksfw-lWW27X1rJSNtNyiaR3RHGgC0oJ0bmx0G8-olBXWxFopTlfBBhzrGOBQcJdllQHuMSp0A06p4rf-VihzzQog/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-MWYOf4fBN8L53rsNHmQtGCw82XCssZ56ioFWGyFYqZueY... https://secure-web.cisco.com/1LSmKKFUaSRpBqvdN0yn79KX75bzxAKJUc_HFu0Y3uw5-POpZ_8opu7YjQjGVMnUIA-1EvvbrxbBtg1yVinl31BNendPrHiwFvD1IRg0hNNHKH191IA7UEFhmt4qCMN0x-ktdd8q5vxsdjcRc5c1u-1UjeDRcEZHkZ0IsMOz4S8ENlefPVjyTYb9sj8Sq5eph25ca4qtsB_gF3SS7NF4eQDdePKmymCcAEyDJezt65Y5r1vHfCDUY413I1TkK1MuZPxzU1mep96u3RQBcf_XHAg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1AuM2RlvbxKkn2aXX_V-DNCetIIUeWDArfRSJ6xOfoTeQpO... https://secure-web.cisco.com/1Bga0sfCt7q_J4tj0ghWdpdwkA8E3_b3eFMc_2JHyD1Pkq1feK6bI-Ym3bq8vVSRVRgKs64HrQvgLxEBwImuCaEwYCexNhbmDpmqvsxS9sPxtdTg8TbBMdvKao2ewXM6Qt5MNsSc3_zNBl8XyA0eYi6bh3_J2wpdfF-_OgtAHDrnm3QZVEydqLEZskVps60rHDoindqIfoN_mnMc8MVV4OfwYAJnz8zGeDaCgeBo7-D1ulneurMJwjkcr5b6n5ATqLvUwKi5F7i65fwal8ztNhA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1o5ZTGcP9tSh47hJvDHCH9TxP9tbrSIW4t0NnRdB2rPue28... https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3RixYDotrwpQoQe1SD5oBkfS-TbVHpaQRNAIAG4GOI9Y923GTU8HsGNZP8Bep11vL_5F4EgdqBbliP2P_M9PFjcTnoUK6eHPCVlbfLnwsYrbaRBLI3HyZ_KbeF3YCSc7aoCuOl4HS54QjLuboHAX3uanjFEZyXFymZ7DMyHN6j_8ANrNyx6djG90bl1S9N-5Tfmm43xE-rBlvFhyBGIS6fLh25QzaYDIKgNflARtA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/165xH_3zQfG9I4V66MqTmHmpxI1czhWOibHVoRgEiZItRV_... https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO20VrWZ0eGJ2DItdgkqBvriGiyghm0tWtca_Kfo3IYeuQcUTrEGSxTVYqS-OZI2RVEfnxI8JP4QatZXz2MaLgipbm4c6X-whgbRjaCubKCSTXHJ4QGaluIskA3DOD8239-qEaCphWv5w6qw7Gm-Ba2muPAm9V1udyYNc02k_ptwo1VbahAeds4qlQ-gubY9aG_i7fxtZ5kjACKRRWpDbA8S6Iy01lcYGzNumK3bIlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1DU_iTLTFJYsFKBDW1qAFBJcRscA8wTaIpBgYJqotjW3ZaZ... https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROnyI3SYPV_koPb3DEc1nGgoLTPLZIJizMfjmKf8VeWIZtd3gWldkMJOSOd677YDiWX3UgWGE5yXJY_-99FquKaRnC_UjGPXLMoZAzz13U4R79gp6EEzulMShhVnrpLtZfyzpeYJRB46SmFiN0cmv07E5xmP2LpWVvfN72WrgrM9tETxg0Jwr5Tdgf9YdwkCk1LQbWop03XdmewsbKCUGo1cmD5Jxzge27FE6Gmc5ng/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting werkzeug>=0.11.15 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1U-eo3PornaPRXPRv9wpAZRJ0KysTFCI1eKNk7bDYZ6LGB2... https://secure-web.cisco.com/1v1TKMfd_P6zYl4sVFufwS7yxOhly__VEN0VpBYzb6bwG2prRecRPkdyr00F-t2RabUK6JiQYoFF64iNwnVK0AABdBXjKXjeEMwkGq156zlnHKd01qkAOXC_ZdOWYTNyaXJx4MU5yxLSSdDxbMeV9gPNN0ccQZMDQRGg51scpJQ9m2OWY1LBwgzYzG34GcUf4AUr3jDknKDuL609eDXBvacVpr9WqVUxgwXD6ZH8GSgBGVUHjV7ZIuLCt2IC0W92ZSOaz6I5BrErVTWHQ7vzUvg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fcc%2F94%2F5f7079a0e00bd6863ef8f1da638721e9da21e5bacee597595b318f71d62e%2FWerkzeug-1.0.1-py2.py3-none-any.whl Collecting markdown>=2.6.8 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1hzCcYJI391jAX60BJ5KOhXTI_StDdqubbpPIBn2dZI9hji... https://secure-web.cisco.com/1-RFQTCupXzUz-iRFbxkS-NKtwbx7gnfDMr8q8symcKVSJCrXUwd_5opYJf4UJN6ql9vPLtWdOq_i1zDgfSCUEo0WCAUgJD671jtmMda6rCAVKK20tGULgybsilZu5Sf_khFfAkdixf76FNcS48MqkSJriH2XaA16A_ekkMdO8Zue-j3tTpgWGPqYS8jK0IbgP_uMay4FwFgfyph1rr0PED1yKTtyXzG8Oxg-Y8sa4ArgWCRCclnySKmfLLxH-FdpRRplyPVcH22nx4on4adqBg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F6e%2F33%2F1ae0f71395e618d6140fbbc9587cc3156591f748226075e0f7d6f9176522%2FMarkdown-3.3.4-py3-none-any.whl Collecting h5py (from keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1fIAdwac6S5Ol2MNSTX02IMOiOJ0Z5BQ63hubcQwefo6Wph... https://secure-web.cisco.com/131qMp792FRLOMfDTnyQxnXhafBfq6wIOSxbjG3m1Fg_FdFGhK52RjDXV7ZjWXftwpJPiylzWsk_BGg8fhR4bcyM-U2rtn4sficr1zdYMyttrr0LhGabXo94bNQlRm5BWzWmuIpkrzt-J6xMlCqdWtUVBEwg4elmfJiURUf-lcZQIf9AfBWpyL5lKFhmZDWRtLpykkVkFGrfKNEbrVskuiFnYL0AtLFkCHbRJNz1JQU1whng4AjyIe40AC5RALeHO776KePBsGP5RO_tXgoP-Fg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F34%2F8b%2F24796b39111b4a235051003986b1c6d43e8b9699ec5936b642231c101c40%2Fh5py-3.1.0-cp36-cp36m-macosx_10_9_x86_64.whl Collecting mock>=2.0.0 (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Fxifs7bNWtQi-v3GNqwUlVy9RoO-CVx2RZQuJyQbbB8ljQ... https://secure-web.cisco.com/15zll9spxR9-xVODAIpHpRMEelwnB6CCFSqbDZakaxUxAM_3tW-BnGJ0ZQX9otv-1XbeiDYxLCP2KpwkR5xkU8HdIj02rQFgakZOKZCWCA1WvEzpUPC2IA9wOTQhHcfdVMnVC-TbdBD7vmHXEX5_y7sWv8LdRCYmvBfWtKsnzm9-ghaV8CD6F9gPaTWwUmWSpUW9i3JlBNSpWSnqalGDMKhNFg0kIZiZPSND3Huq4Ye0fOG-ku-6BmjvtT_2s5IVWQyjN5WenPbn-raMxoq3wlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F5c%2F03%2Fb7e605db4a57c0f6fba744b11ef3ddf4ddebcada35022927a2b5fc623fdf%2Fmock-4.0.3-py3-none-any.whl Collecting importlib-metadata; python_version < "3.8" (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1DcdixT18tgcsnZ27YVECadlVQP-9l6Bjo6_GoWoltWa4S7... https://secure-web.cisco.com/1FXv2-9Xqlf6UO2-XDdnx4NHYzNmTe0FDsnAIkrRYlJq3_5BvYaMKG6oBGgWGELXLtD0SkDqoAN06QPlCETT2WgON2nNFxfWBRk6UPuzjBlSwDhC1VzQ36_IUQCH4es1hDAmLJuV7kLvGhonP4DcGCFWuB-xGfFrg5NDamFEW6zDG0vCq-BOJHtn2uVP_KiMBXtRt8jylBov-JqQfDlsKgapZVcMZe3JsadUVNZs36GJqlsgyCAyFZ136Ko7-KJYp3W_CAdsGWJwdqwywnYFhxQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F52%2Fd0%2Fbdb31463f2d9ca111e39b268518e9baa3542ef73ca449b711a7b4da69764%2Fimportlib_metadata-3.10.1-py3-none-any.whl Collecting cached-property; python_version < "3.8" (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/14_taQWzr1w_iAX2aFGPKAGL5yFIKDkeZR3M5XT9PbGrg61... https://secure-web.cisco.com/1uvvHIogRfkxVSdiM8Ew2bQJCSVH5zpq4zRqYs8e9-Shce4jYvPLEwk-6h57FBvpfX3eW9Tp6wb584GNYcnmYsYg3moRoiHdMPvxHGDvsyLtL8qqWyrX0AtVn6ynnZKguvNUcMEiLbovgH4qzAjipahQ-pfQ0rZB1FKqvj2KIhXZJ6KWkhvpTjClapxLQTTeSSiiPYUCU4EHG6yfe9oyzZEtrP9PX8533Wn0F-mhvxmyLJIDrU7T98FU2ij_W4lugOEuE8rl3n5VmAW-lFZevLA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F48%2F19%2Ff2090f7dad41e225c7f2326e4cfe6fff49e57dedb5b53636c9551f86b069%2Fcached_property-1.5.2-py2.py3-none-any.whl Collecting zipp>=0.5 (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1jjJObZrrIVcWbZAJEYgwEGPoNKMjCi3YE-4UFuzpqqfj2w... https://secure-web.cisco.com/1S-t6Pq9hklSG64kPJ8JbEM6bQAlEI-AfoeKiveh3O7QuPljk4xBmeKFBLIGQtnpYi1Q2vCDvaqHUbiQXPycUQqWGAxdO8uq0ZXU_PAfBmVUYYvVdbHix80xsTsZQ4Vb9q-HQLUk1JbFJAllIGU5nIt7wYq-ngRR8gwGw7kBoOqclSjBvtDJVNsE-1avMSDIr9pO8WoSaj5ITN8-G_q43AvMWXBwkS--tIBYIe46FIpxqJygnxxEWG5MvSlhp1tU2AW31_YLCbARXpbGOyZd4sQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F8c%2F715c54e9e34c0c4820f616a913a7de3337d0cd79074dd1bed4dd840f16ae%2Fzipp-3.4.1-py3-none-any.whl Collecting typing-extensions>=3.6.4; python_version < "3.8" (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-fe9VzCaIwESceTOaatNt-yPkveNWaEhNFjG-vVdlz1jxt... https://secure-web.cisco.com/115oJckN0s7VM7FDbFcbn-TS618Z2BvhMz22XDzlZrFoxtmEHS1sdgy2S0GUwRnyY0ivKAXWmMmrDowMvD4_fHwknWsW2zaoR6gPoMWi4nHISV1DY-3xzJ4KqFKkdycAC-YRBGAGXqxb5VS9T2dp_1KcQG9NILrdgO7oKpKb8VTyON3M7AVCyMPO3sHHUY3bhW_t0cOwv0YmP7eFV1l5mk9ZXI1cbodGu3qLBSm40c6oSk9arPUkb848MkRUMF0MkjjJcOHsGrm7wQ4aax-AdHA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F60%2F7a%2Fe881b5abb54db0e6e671ab088d079c57ce54e8a01a3ca443f561ccadb37e%2Ftyping_extensions-3.7.4.3-py3-none-any.whl Installing collected packages: keras-preprocessing, astor, wheel, absl-py, werkzeug, protobuf, grpcio, zipp, typing-extensions, importlib-metadata, markdown, tensorboard, gast, cached-property, h5py, keras-applications, mock, tensorflow-estimator, termcolor, tensorflow Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Applications/freesurfer/7.1.0/python/lib/python3.6/site-packages/keras_preprocessing' Consider using the `--user` option or check the permissions.
Not sure what the EnvironmentError is? The myenv was set up as: conda create -n myenv python=3.6 conda activate myenv
Many thanks.
AJ
On Fri, Apr 16, 2021 at 11:38 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionMaybe you want to check your .NET core version?
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1tnLiwws3aq7mmPlrPmKlTsxXbWPiUW8Ivcnq_DccKkp4PJ... https://secure-web.cisco.com/1yA0JP579_nnFgIsajBEG82WAZ8ZXFFAjhKmNhWALkdw3hWQHGEcHyIQn9f2Zja-3VCQLCFm9O0vC7xCZ_M4GHuJonItW4QLqSd4D3b7dVWPWb8b-NWodb-k9cpmqMdEGAH3pZnQ3hXuGkzltwOzrIGPZTkE_T-1ht-5GhHd-1bwYhz42vrq_kA885Iex-1TOugC-ktILkE7eYWn-UWDgTvloa6sK6PzcGTuCKH2N64-fOBxvnMYUo0COaP98cZrVV9ryDBJqEZBKm0-XQigEsA/https%3A%2F%2Fgithub.com%2Fdotnet%2Fcore%2Fissues%2F4005
On Sat, 17 Apr 2021, 09:33 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry, but I get the same error after conda create -n myenv python=3.6 conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1YsBo_hu9Vb5gNw1SSTPEnDCl6wuWgXwfvRHdBOgEoZkSOF... https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1RiQa92bWj7mXUkX467SbivIk-113NgpEU_59s0e6w3ERLn... https://secure-web.cisco.com/1RMFXu4xTNiyrlVHbqnFhCp06zcdACw-b85vgi-wBoMDkIycA4pXi8xb5Wd97atgVnp5x1tGG6PrqPcH-AtQi2iMfbdY1Hw2Sh4Z52sW5U1LhBKxPYiFJmB5wwdVjaU0Rx-TmaoQbeLMVz8tugeVp4e8dC8_kMIw50hrEk3rEpbLBo0TFyMSHe_Jn2n63vW6ywfiywtr0B0rzMLTHwI2e9NvDZRzP8YZtbnnN2N86u-WsnyGSK2flOryf3YPYw5tM4zQ3ADoIs_hoKasrRLCYmQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-MWYOf4fBN8L53rsNHmQtGCw82XCssZ56ioFWGyFYqZueY... https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qDSltc0yDQeHeUNdpQb6xWEJmNcsc94e747p1zYGWBjD21VPp6A5JyBE472z3_9IsJSimgpwQsjJIr5FajJz0wtLKMvndRW6qIa2Vlr-e4OGId3NHIK-kauEd8DM6nvBGLFM8zKN0ofVgT4Y1PF6YR5ILpi3vobatS3Y5I6gOgTMpRE_M3dSQDQBVszLjLxGYtvREzN4DOmouqfpE3JEbicX7a4kNtNnhdVaSAwXnw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-XdHMerEkwGMFTt7gA-my1xNO7ob7bSPYMa49piEGyISoC... https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1AuM2RlvbxKkn2aXX_V-DNCetIIUeWDArfRSJ6xOfoTeQpO... https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1CkpPAhX2XFWPkt5nPmUlxJLZVS2GEHsRi6bj7qXgeXsZSf... https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1lsnIg4zaVmdnI87ZWFPCJFuo0tMP3m_j04nzi3NBaC9SrG... https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/165xH_3zQfG9I4V66MqTmHmpxI1czhWOibHVoRgEiZItRV_... https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1StCA7dctixgkt7dhWXTCfsnSkvBqqp1Z_eayBmGzWNfkwc... https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1DU_iTLTFJYsFKBDW1qAFBJcRscA8wTaIpBgYJqotjW3ZaZ... https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1o5ZTGcP9tSh47hJvDHCH9TxP9tbrSIW4t0NnRdB2rPue28... https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote:
thank you so much. I just installed conda. (base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2 Is myenv /Aplications/freesurfer/7.1.0 thank you. aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution
- Make sure you have conda installed
- In your terminal, then
conda create -n myenv python=3.6 conda activate myenv
- Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote:
> External Email - Use Caution > > sorry for being non-tech, but how do I exactly do creating a conda > venv with Python 3.6. > many thanks > aj > > On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com > wrote: > >> External Email - Use Caution >> >> Hi AJ, >> >> So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. >> Python >=3.7 only supports TF2. Can you try creating a conda venv with >> Python 3.6 and try again? >> >> On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote: >> >>> External Email - Use Caution >>> >>> Thank you so much for your help. >>> Here's the error: >>> MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 >>> Collecting tensorflow==1.15 >>> Using cached *MailScanner has detected a possible fraud attempt >>> from "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1VOgG6kaFOe3igbQ3TFLLm7kcr5B5Fabcsopas7zaVtOGaN... >>> https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl >>> Requirement already satisfied: six>=1.10.0 in >>> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >>> (1.14.0) >>> Collecting keras-applications>=1.0.8 (from tensorflow==1.15) >>> Using cached *MailScanner has detected a possible fraud attempt >>> from "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1-MWYOf4fBN8L53rsNHmQtGCw82XCssZ56ioFWGyFYqZueY... >>> https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl >>> Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) >>> Downloading *MailScanner has detected a possible fraud attempt >>> from "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1GStYCKeXsm7cGzlcvRNZH5bItNYFUUvam7xjEoF-Vauhsn... >>> https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl >>> (503kB) >>> 100% |████████████████████████████████| 512kB 5.8MB/s >>> Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) >>> Downloading *MailScanner has detected a possible fraud attempt >>> from "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/12hZbkx026Cc3jXj12PviFKVKnjp8uQVfHgSYJ9D9jQ9mn8... >>> https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl >>> (65kB) >>> 100% |████████████████████████████████| 71kB 13.9MB/s >>> Requirement already satisfied: numpy<2.0,>=1.16.0 in >>> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >>> (1.18.4) >>> Collecting absl-py>=0.7.0 (from tensorflow==1.15) >>> Using cached *MailScanner has detected a possible fraud attempt >>> from "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1lsnIg4zaVmdnI87ZWFPCJFuo0tMP3m_j04nzi3NBaC9SrG... >>> https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl >>> Collecting wrapt>=1.11.1 (from tensorflow==1.15) >>> Using cached *MailScanner has detected a possible fraud attempt >>> from "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1f7bLkLz_WcQ58cQCShZHlDTvAs66Sm-HzBMvEzZcmRFQKb... >>> https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz >>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>> Referenced from: >>> /Applications/freesurfer/7.1.0//python/bin/python3 >>> Expected in: /usr/lib/libSystem.B.dylib >>> >>> dyld: Symbol not found: _utimensat >>> Referenced from: >>> /Applications/freesurfer/7.1.0//python/bin/python3 >>> Expected in: /usr/lib/libSystem.B.dylib >>> >>> Abort trap: 6 >>> >>> >>> >>> On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < >>> AHOOPES@mgh.harvard.edu> wrote: >>> >>>> Hi AJ, >>>> >>>> >>>> >>>> Freesurfer ships its own python distribution, so it doesn’t >>>> matter what you have installed on your system. Can you let us know the >>>> specific version of macOS you are using and send the full error report from >>>> pip? >>>> >>>> >>>> >>>> Thanks >>>> >>>> Andrew >>>> >>>> >>>> >>>> *From: *freesurfer-bounces@nmr.mgh.harvard.edu < >>>> freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < >>>> ajcns1969@gmail.com> >>>> *Date: *Friday, April 16, 2021 at 11:56 AM >>>> *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu >>>> *Subject: *Re: [Freesurfer] error installing tensorflow >>>> >>>> * External Email - Use Caution * >>>> >>>> Hi, >>>> >>>> I have python both versions of python installed: >>>> >>>> MacBook-Pro-4:~ AJ$ python3 --version >>>> Python 3.9.4 >>>> MacBook-Pro-4:~ AJ$ python --version >>>> Python 2.7.10 >>>> >>>> >>>> >>>> when installing fspython -m pip install tensorflow==1.13.1, I >>>> get the error: >>>> >>>> dyld: Symbol not found: _utimensat >>>> Referenced from: >>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>> Expected in: /usr/lib/libSystem.B.dylib >>>> >>>> Abort trap: 6 >>>> >>>> >>>> >>>> Is the issue that freesurfer is looking for python3? I am not >>>> sure how to get past this installation of tensorflow? >>>> >>>> Thank you for your help. >>>> >>>> AJ >>>> >>>> >>>> >>>> >>>> >>>> On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com >>>> wrote: >>>> >>>> * External Email - Use Caution * >>>> >>>> Can you try downgrading to python 3.6 in a conda env? Python 3.7 >>>> support only TF 2.0 and higher. >>>> >>>> >>>> >>>> On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote: >>>> >>>> * External Email - Use Caution * >>>> >>>> Hi, >>>> >>>> >>>> >>>> I am having trouble installing: fspython -m pip install >>>> tensorflow==1.13.1 >>>> >>>> Not sure what the issue is. Any help would be greatly >>>> appreciated. >>>> >>>> best >>>> >>>> AJ >>>> >>>> Error message while installing: >>>> >>>> >>>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>>> Referenced from: >>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>> Expected in: /usr/lib/libSystem.B.dylib >>>> >>>> dyld: Symbol not found: _utimensat >>>> Referenced from: >>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>> >>>> Expected in: /usr/lib/libSystem.B.dylib >>>> >>>> >>>> >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> *MailScanner has detected a possible fraud attempt from >>>> "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1Sk1bgKDZ60Qsjli0dDdTB5fqitMzvJSAtYS4smJ4ct2Sxk... >>>> https://secure-web.cisco.com/1RH8B-mspcxcCMTj4oKqYSr1GH59O3_OYduSDRxO5qS0AV24oBD5aWIo5z5zkVq11UOKmuWRg73LPL6ytL8nRQnhgqWgPYCTsEXlHi54o8I7pTV5x8yadd9zn3s4-dffSDIPttOT63H32kPqemaUJewqwqh7wsVfNVCe3KKoy1KRy7iIoHOWPMIl_GR0wAeyHOw2aDxFSUi6PLOE4HO_qfyaeNaahXjYsS3bN6k92bMiUciImOKIhwBB0-JKt-KSHZxcXcLq4Uj8dS1PecPhvUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> *MailScanner has detected a possible fraud attempt from >>>> "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1Sk1bgKDZ60Qsjli0dDdTB5fqitMzvJSAtYS4smJ4ct2Sxk... >>>> https://secure-web.cisco.com/1thz0yltdMgkYjHj_yl7NWAgTjAKR3mIya3jP_-NSm1yrX-vZ6JhjawzykczGn2QH-yZWySshjrV83ewzIv39MenpaT-wyBQ1IyccHBAqSeK7qe9kCYv0hqLHF8Jl8AOXuyxlbQgz7EEaD-Vh3D0-anBgWRHNQkRF8Rl0W7Wdr-ISk6O2knKd8StGriD11KOGguSV_P5GInqwWskvA6LkM4mEdjA5Ef6pJxtYpDvl4ixgADqF2Jkq7XwuKube-YGw72Hk3UuyF7hVEA5PxeZ4FQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> *MailScanner has detected a possible fraud attempt from >>>> "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1Sk1bgKDZ60Qsjli0dDdTB5fqitMzvJSAtYS4smJ4ct2Sxk... >>>> https://secure-web.cisco.com/15Mi3hxeDDGFfvS_iDtAMO30EQeOm-pv_cV-Tx6Tvt0A-XUAU6tnccwVldP4WAeO7j2U-jezlH3TitYyMlaTcn1zsm8KuVK2Hr63TCws2ltzwsznvIHeMcR1aiNeENbpj3INJ0_LLxh3cUinqEwvaa9mdl-yOOFg8Sc6Ff9Va7pprtd8ua6EkrqQ0H9qR3wB2nXTpxmBzw_i8rdVKH-SAEQoLUNA75lgzBelEYkVnNzUZSI9lroVmv8KNK2GUF4-Dy6JPpW6kHtdYMBkiUmX1uA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1Sk1bgKDZ60Qsjli0dDdTB5fqitMzvJSAtYS4smJ4ct2Sxk... >>> https://secure-web.cisco.com/1moGJSKrlAv__zKfFKWKLJ7M83P3Xw4JOHTCh6tbKrdBqMc1NsPo1m6V5H8ijpyI6MsP7ymnbc3VKfSSb8eJ2XrvGs2QEGHlvyI4QkAyVprpKW_uacCWiTURMFfN9eT-NLhF0SbFBBtgM-Y9gtk6kxPfoiNKEKtpx0oO4by6comkJhLK9quf6D1jx_Muqab0SvSIR-ViJ6TSMIdpjN-6lhbl-kFwVKlBaE5XU-m0LSmmre1T_NN_vIJsp-Vx6_IiefU9-oO-ofy1vaL2YrmngOw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1Sk1bgKDZ60Qsjli0dDdTB5fqitMzvJSAtYS4smJ4ct2Sxk... >> https://secure-web.cisco.com/1gxEq9RTXzjJyTM_I59m3P05jiMMmW-zjC4xlr5PqLfAkeeUttgmOijncAOf6omd2IK_nL_SCfnwu0l7rVodyvBZQ8UR8_jO7A0_hNudIRo_n6px8Cy6W_YRwJlkUWnN6TGyomYxaSw1-0hAdJcF0FBtACHeM1VCtO9zgmA-tirhiSifmfSkDpkY3CBHbr4gQ-Y1V-KRsopE113rvx0b3fhy2CvB3VrM8c523XSvgJVmFTcpUT7WqCLQg5Nf_k86e4HMY3uUfCmO3EcWiNL6mIA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1Sk1bgKDZ60Qsjli0dDdTB5fqitMzvJSAtYS4smJ4ct2Sxk... > https://secure-web.cisco.com/1vYAfyo16dc3rKqTeir4GG2Ca6Z9reqbEk9je8xLgF18VwRUjT286klvob-lwcQJobZ5eTFp2ask1_-AOUnXiHDPqcWHq_jUPm-vXFQws0M1mj-UE9qXE3QkKlf4wQ6lIxDgGibT-YSWu8C8ezW--ED6CVeVCcLGok2tM5-HIRLMPY3VhHO_1GQEmV_TXkV5TQnGnpHymYP432OWtROK3SmXY2S-X5cdRH4rZTdNSLmVveqrrHEp9svbcRXcsfOY4vZU2LrewFXJVukQdjutvWw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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External Email - Use Caution
No instead of --admin permissions it would be --user
On Mon, 19 Apr 2021, 07:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you for your response.
Would that script be fspython -m pip install tensorflow==1.13.1 --admin permissions
On Sat, Apr 17, 2021, 20:33 Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionCan you try running the same command with the --user flag (admin permissions)?
On Sun, 18 Apr 2021, 00:40 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you for your help. I think I'm getting closer to installing tensor flow. 1-as you suggested: installed .NET
(myenv) MacBook-Pro-4:~ AJ$ dotnet --info .NET SDK (reflecting any global.json): Version: 5.0.202 Commit: db7cc87d51
Runtime Environment: OS Name: Mac OS X OS Version: 10.15 OS Platform: Darwin RID: osx.10.15-x64 Base Path: /usr/local/share/dotnet/sdk/5.0.202/
Host (useful for support): Version: 5.0.5 Commit: 2f740adc14
.NET SDKs installed: 5.0.202 [/usr/local/share/dotnet/sdk]
.NET runtimes installed: Microsoft.AspNetCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.AspNetCore.App] Microsoft.NETCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.NETCore.App]
To install additional .NET runtimes or SDKs: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1hj-ArPZFQ0vOlgYZ9IUGDc-DTe2tS93Bl5Kc1UGdI5i4UF... https://secure-web.cisco.com/1OxYkG-3ytzUXBmp6iwhX6GTNcJNN9ebFt06hE_vUaohhHxw1akcr8GYz9dMHjSFShk3tayfQZ7hxie3xKH-wBvyKLXSa9eM-CAr65Rb6wh5-YVoUJXGOXkv4iphdq8gJ-S_GeccsJdQsQQCrKBO8J61KZaaODZYIS8Fdd1apGSdI_ZTKf0q6T3j4fL28ET4qHARQYQEEOybeBDgMpfwDjLgGCGigsLKBNRHQg-HZazd6jsjnIhYf99CVKn7tuO-_Bp48z3tNPP3csglBVECo6A/https%3A%2F%2Faka.ms%2Fdotnet-download
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1d0xIFUJhCuEZg4krNd_FbPcuVrZah1LWsz0Jb0ywGSc5gd... https://secure-web.cisco.com/1CcF2y2q_HUgQ439LsQWK2Zie3vsvuCSIbTBcN6hC5UjggKTpfnqciQfitLK94Cw98fB3eTE02Se_4X7d6r9EmPPV7qNBG8aUK5IfJhLgsgtwqzKTDAMS2CCLf1lAPHtv_Eog-Er9gKcR5lxyg_5TEbEuaflWB4bFmLf6DzFSsLTNXImvgbVCBYvOImkdU_mM9szbXcNtnPoAv8vw6aBbB4BEYHazwBK3237PS1k2EgU8rQ6_HniTkyf5Mo4bN467Kp7RseIKlAN95SbyVmtqOw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1juDksa4f_LCZUi1tgwTmKLJREme1A5ZUGVDVZl1czJ4PF_... https://secure-web.cisco.com/19q916xZq2SAv6hsVsFXQmN4PFDz1V4xO9lrcrnOcAMRMlAsG944eiR9fVN9QiuOswvieotJP-xPUCfbIb2v7s1yIOl5zeg4WD63PdJ7eZXRH86JhMmV29HK4hOBKiN1URbSE8WRgPvRtDUtk5CzAna0UmwMqdZ-ITHd3yrS0MQ9aImDNqyIp-IpLtPUZ2eCUIKbuDJCuZwg3QdYpuN7HIoeq6s4AULrS2oI364b7ZDDBEii6z3ennBy2TFr3de9Sec-UTvdCxrrj6n9oCAoIcg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting astor>=0.6.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Mp5fc7RAfLzbmhKtW5TM8AM2HzM1il7ZUWfOusVVAMxdIn... https://secure-web.cisco.com/1GZfov0hn7NAdkr_BPor4qry7T8qjxb6-lgnrP_Zlek817tEFL5I8aHTYnVPpPhwz1iPH5v5euFFPVdhAgDP8t0nty-5xYaYlVVy3eZaAnApeRXXzOxja_8LManl_95FKy3-9_g5M4cDaz86Q4HN172Brd29Rx1zSptbSINonnMywazbMTXnZClepaikxo7_Smchhm_zzLOPTd8lVWvAkwwXO96tqSKi51aV0o0uJkAObAFL6xNH53G4NMXdMbw6KZFDWcD-gBrxKyN7kDwxgBw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fc3%2F88%2F97eef84f48fa04fbd6750e62dcceafba6c63c81b7ac1420856c8dcc0a3f9%2Fastor-0.8.1-py2.py3-none-any.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1tqxoOJ0fpbjDY9TrTwvxaLaNMVHZzWj_AmlcRgRUkUh3eZ... https://secure-web.cisco.com/1n1Rm9tZILMvzB6BSjUNGK8m9OZ1sYvuLUAJFQ7JWxJc7JrBZmS9MvCJHNzr11J_SaFeBMxN2xlYJ3TF11qQcs1tIt57nERIhuAT-h0Zr4aGh6yG5_fmDP7jk_or3NdmRN5J2OEpp9j1hzSUeD9Mw1fABRHF8G9RaoPf16v-D-_WKuwmLIHW8ywMAo43aCFDP_7iwXqoSlpJkQp8EeLWTgpuQ5XuSepBQUsjgaxR_5cMlBnccgRVtXAj5LiYcQ3Xvn9_om4l3Ab7XQ5L6Bjun3Q/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L8Xi_mbBEK_PuGPdHzwkLTXtka2Kc4TzLTY1YLvwrm5DOV... https://secure-web.cisco.com/1_zAg6j0XNd0Wu7pr0WG0qrX50QCFuLUvOZHbXSrC-M7ZdtSbn-ukmQKHeTL1_9k7WsUzhJRowGKXf9xEtEmm0G4rr7Eq46fQp4nwztAW-_IpyX59QymsvBC8x5e1rk7zej2UcHbM9l0oyH3K1NirbybXagQyM_n-Bsr9hoQOpSgAcL4Qp7tHtUWYyxA5ZquAhW84dV_VmxRwCf_hyhgFExlf18-LUQhF12xrLBARGd7Eb6XMd3PwUkVPqGAeEBnsIXdb3u7wEV7FKRovsKHQAQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1f44I_5Mq83iWLaR-WGf1hnOVa1UVrOhmRgeI_S4IMXi1Ui... https://secure-web.cisco.com/1JNkkdPQlC1yKIriRIhp7_J7gPdZnInNt0X_J4HID6QDVmS3SD1rsTHVUS3VhuQ6gL1H0vyp3_uZJgweWQRt1Q0KCuQnERpBFeliNJ-UBBKUmzJ0qlfNs-YnZ1Vl5aowX5PTO5wdZOecSteh2GLUz4hY2gnWrQS7grP6t80R_4bs4TmjWp49r0zT0I-UbniEN17867ODtzwdRHj2J5UK5F13P5-mXbonBFgpRKCKr-pYLt4ouGQhDdzkyPhk30Bvw-hJfc03KqUOsmt3r5d1fQg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1kSqFjowprdgQBviwtJkI4VrdjQahliKFXnuIF17LMeKdzQ... https://secure-web.cisco.com/1G9XEDCnxN1YTZpmYbtxq6mithjtSrUKzzlUKdp7sPNqOF2juoi7YDowWfrC1UIWvrBLmJJxGMQY8n9fDrkR1LmwMMeVXd7k4qPd3uDCB5eAfLaHJF3ExaG1ykMjX2gDbHXQWwsijoqkCLddbbOv3U5Adsh5PU5Lmkp8JbTrp9VSy0Q5xWWplvncNv3L-j0Ksfw-lWW27X1rJSNtNyiaR3RHGgC0oJ0bmx0G8-olBXWxFopTlfBBhzrGOBQcJdllQHuMSp0A06p4rf-VihzzQog/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1LAQ7E7WSkFs99oFIxXNeaoZArgs7GpKvuq1v0EaZrzeRH2... https://secure-web.cisco.com/1LSmKKFUaSRpBqvdN0yn79KX75bzxAKJUc_HFu0Y3uw5-POpZ_8opu7YjQjGVMnUIA-1EvvbrxbBtg1yVinl31BNendPrHiwFvD1IRg0hNNHKH191IA7UEFhmt4qCMN0x-ktdd8q5vxsdjcRc5c1u-1UjeDRcEZHkZ0IsMOz4S8ENlefPVjyTYb9sj8Sq5eph25ca4qtsB_gF3SS7NF4eQDdePKmymCcAEyDJezt65Y5r1vHfCDUY413I1TkK1MuZPxzU1mep96u3RQBcf_XHAg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1BTl2PYbav8qg92zYxnrRL-tR8RTIri--_-TJTsdjmqEDEs... https://secure-web.cisco.com/1Bga0sfCt7q_J4tj0ghWdpdwkA8E3_b3eFMc_2JHyD1Pkq1feK6bI-Ym3bq8vVSRVRgKs64HrQvgLxEBwImuCaEwYCexNhbmDpmqvsxS9sPxtdTg8TbBMdvKao2ewXM6Qt5MNsSc3_zNBl8XyA0eYi6bh3_J2wpdfF-_OgtAHDrnm3QZVEydqLEZskVps60rHDoindqIfoN_mnMc8MVV4OfwYAJnz8zGeDaCgeBo7-D1ulneurMJwjkcr5b6n5ATqLvUwKi5F7i65fwal8ztNhA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-A_0weszCuFv5Tff7grqDDIKGKtlbSDhwsaIGSsmCQBIvr... https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3RixYDotrwpQoQe1SD5oBkfS-TbVHpaQRNAIAG4GOI9Y923GTU8HsGNZP8Bep11vL_5F4EgdqBbliP2P_M9PFjcTnoUK6eHPCVlbfLnwsYrbaRBLI3HyZ_KbeF3YCSc7aoCuOl4HS54QjLuboHAX3uanjFEZyXFymZ7DMyHN6j_8ANrNyx6djG90bl1S9N-5Tfmm43xE-rBlvFhyBGIS6fLh25QzaYDIKgNflARtA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1UMmg1ZpeY5Ht_8parEcyFEQuaDP1Jn-zPq5YGOP2aXO9Ir... https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO20VrWZ0eGJ2DItdgkqBvriGiyghm0tWtca_Kfo3IYeuQcUTrEGSxTVYqS-OZI2RVEfnxI8JP4QatZXz2MaLgipbm4c6X-whgbRjaCubKCSTXHJ4QGaluIskA3DOD8239-qEaCphWv5w6qw7Gm-Ba2muPAm9V1udyYNc02k_ptwo1VbahAeds4qlQ-gubY9aG_i7fxtZ5kjACKRRWpDbA8S6Iy01lcYGzNumK3bIlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1jeNMjLaf5vUaDMy50rDgt3LqQT-twCrr5YXrccqv50k22d... https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROnyI3SYPV_koPb3DEc1nGgoLTPLZIJizMfjmKf8VeWIZtd3gWldkMJOSOd677YDiWX3UgWGE5yXJY_-99FquKaRnC_UjGPXLMoZAzz13U4R79gp6EEzulMShhVnrpLtZfyzpeYJRB46SmFiN0cmv07E5xmP2LpWVvfN72WrgrM9tETxg0Jwr5Tdgf9YdwkCk1LQbWop03XdmewsbKCUGo1cmD5Jxzge27FE6Gmc5ng/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting werkzeug>=0.11.15 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1JX1zMf8sA2QsMzgYgBTUTx3cQ57o0koOkzyab0yk6sts9h... https://secure-web.cisco.com/1v1TKMfd_P6zYl4sVFufwS7yxOhly__VEN0VpBYzb6bwG2prRecRPkdyr00F-t2RabUK6JiQYoFF64iNwnVK0AABdBXjKXjeEMwkGq156zlnHKd01qkAOXC_ZdOWYTNyaXJx4MU5yxLSSdDxbMeV9gPNN0ccQZMDQRGg51scpJQ9m2OWY1LBwgzYzG34GcUf4AUr3jDknKDuL609eDXBvacVpr9WqVUxgwXD6ZH8GSgBGVUHjV7ZIuLCt2IC0W92ZSOaz6I5BrErVTWHQ7vzUvg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fcc%2F94%2F5f7079a0e00bd6863ef8f1da638721e9da21e5bacee597595b318f71d62e%2FWerkzeug-1.0.1-py2.py3-none-any.whl Collecting markdown>=2.6.8 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1F4M4p-YSJQUUuAxFUtjDuX1mSFVD2Ns0N2c5hpGaCea9tv... https://secure-web.cisco.com/1-RFQTCupXzUz-iRFbxkS-NKtwbx7gnfDMr8q8symcKVSJCrXUwd_5opYJf4UJN6ql9vPLtWdOq_i1zDgfSCUEo0WCAUgJD671jtmMda6rCAVKK20tGULgybsilZu5Sf_khFfAkdixf76FNcS48MqkSJriH2XaA16A_ekkMdO8Zue-j3tTpgWGPqYS8jK0IbgP_uMay4FwFgfyph1rr0PED1yKTtyXzG8Oxg-Y8sa4ArgWCRCclnySKmfLLxH-FdpRRplyPVcH22nx4on4adqBg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F6e%2F33%2F1ae0f71395e618d6140fbbc9587cc3156591f748226075e0f7d6f9176522%2FMarkdown-3.3.4-py3-none-any.whl Collecting h5py (from keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/192JPojyzNNuVL7KNXv2wlyhx2JYHmCk4AuIuAzxrpVZphf... https://secure-web.cisco.com/131qMp792FRLOMfDTnyQxnXhafBfq6wIOSxbjG3m1Fg_FdFGhK52RjDXV7ZjWXftwpJPiylzWsk_BGg8fhR4bcyM-U2rtn4sficr1zdYMyttrr0LhGabXo94bNQlRm5BWzWmuIpkrzt-J6xMlCqdWtUVBEwg4elmfJiURUf-lcZQIf9AfBWpyL5lKFhmZDWRtLpykkVkFGrfKNEbrVskuiFnYL0AtLFkCHbRJNz1JQU1whng4AjyIe40AC5RALeHO776KePBsGP5RO_tXgoP-Fg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F34%2F8b%2F24796b39111b4a235051003986b1c6d43e8b9699ec5936b642231c101c40%2Fh5py-3.1.0-cp36-cp36m-macosx_10_9_x86_64.whl Collecting mock>=2.0.0 (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1md9MxEBXfQRu200eI8oKBJJ0XTSLz7WB9S_SPnSAXjfJgu... https://secure-web.cisco.com/15zll9spxR9-xVODAIpHpRMEelwnB6CCFSqbDZakaxUxAM_3tW-BnGJ0ZQX9otv-1XbeiDYxLCP2KpwkR5xkU8HdIj02rQFgakZOKZCWCA1WvEzpUPC2IA9wOTQhHcfdVMnVC-TbdBD7vmHXEX5_y7sWv8LdRCYmvBfWtKsnzm9-ghaV8CD6F9gPaTWwUmWSpUW9i3JlBNSpWSnqalGDMKhNFg0kIZiZPSND3Huq4Ye0fOG-ku-6BmjvtT_2s5IVWQyjN5WenPbn-raMxoq3wlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F5c%2F03%2Fb7e605db4a57c0f6fba744b11ef3ddf4ddebcada35022927a2b5fc623fdf%2Fmock-4.0.3-py3-none-any.whl Collecting importlib-metadata; python_version < "3.8" (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1R1ZMHTFgEREFASjXNSLYI0SGGfCpbaQiiOGQck6rYCGAs9... https://secure-web.cisco.com/1FXv2-9Xqlf6UO2-XDdnx4NHYzNmTe0FDsnAIkrRYlJq3_5BvYaMKG6oBGgWGELXLtD0SkDqoAN06QPlCETT2WgON2nNFxfWBRk6UPuzjBlSwDhC1VzQ36_IUQCH4es1hDAmLJuV7kLvGhonP4DcGCFWuB-xGfFrg5NDamFEW6zDG0vCq-BOJHtn2uVP_KiMBXtRt8jylBov-JqQfDlsKgapZVcMZe3JsadUVNZs36GJqlsgyCAyFZ136Ko7-KJYp3W_CAdsGWJwdqwywnYFhxQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F52%2Fd0%2Fbdb31463f2d9ca111e39b268518e9baa3542ef73ca449b711a7b4da69764%2Fimportlib_metadata-3.10.1-py3-none-any.whl Collecting cached-property; python_version < "3.8" (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1IEdhxlwiUk_F31CklSERfcdJ4oTR1Khkj9Q26mptoyPlBV... https://secure-web.cisco.com/1uvvHIogRfkxVSdiM8Ew2bQJCSVH5zpq4zRqYs8e9-Shce4jYvPLEwk-6h57FBvpfX3eW9Tp6wb584GNYcnmYsYg3moRoiHdMPvxHGDvsyLtL8qqWyrX0AtVn6ynnZKguvNUcMEiLbovgH4qzAjipahQ-pfQ0rZB1FKqvj2KIhXZJ6KWkhvpTjClapxLQTTeSSiiPYUCU4EHG6yfe9oyzZEtrP9PX8533Wn0F-mhvxmyLJIDrU7T98FU2ij_W4lugOEuE8rl3n5VmAW-lFZevLA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F48%2F19%2Ff2090f7dad41e225c7f2326e4cfe6fff49e57dedb5b53636c9551f86b069%2Fcached_property-1.5.2-py2.py3-none-any.whl Collecting zipp>=0.5 (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1BZ9gRWOZJJF1xxA0hxbp2_6qy2ks932gVmduRykj2-tEJ3... https://secure-web.cisco.com/1S-t6Pq9hklSG64kPJ8JbEM6bQAlEI-AfoeKiveh3O7QuPljk4xBmeKFBLIGQtnpYi1Q2vCDvaqHUbiQXPycUQqWGAxdO8uq0ZXU_PAfBmVUYYvVdbHix80xsTsZQ4Vb9q-HQLUk1JbFJAllIGU5nIt7wYq-ngRR8gwGw7kBoOqclSjBvtDJVNsE-1avMSDIr9pO8WoSaj5ITN8-G_q43AvMWXBwkS--tIBYIe46FIpxqJygnxxEWG5MvSlhp1tU2AW31_YLCbARXpbGOyZd4sQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F8c%2F715c54e9e34c0c4820f616a913a7de3337d0cd79074dd1bed4dd840f16ae%2Fzipp-3.4.1-py3-none-any.whl Collecting typing-extensions>=3.6.4; python_version < "3.8" (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1XSDh2TNDEGDXiHvTRSYAqjgnd7Bx0ElsGB9PyJ_dJdzX7K... https://secure-web.cisco.com/115oJckN0s7VM7FDbFcbn-TS618Z2BvhMz22XDzlZrFoxtmEHS1sdgy2S0GUwRnyY0ivKAXWmMmrDowMvD4_fHwknWsW2zaoR6gPoMWi4nHISV1DY-3xzJ4KqFKkdycAC-YRBGAGXqxb5VS9T2dp_1KcQG9NILrdgO7oKpKb8VTyON3M7AVCyMPO3sHHUY3bhW_t0cOwv0YmP7eFV1l5mk9ZXI1cbodGu3qLBSm40c6oSk9arPUkb848MkRUMF0MkjjJcOHsGrm7wQ4aax-AdHA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F60%2F7a%2Fe881b5abb54db0e6e671ab088d079c57ce54e8a01a3ca443f561ccadb37e%2Ftyping_extensions-3.7.4.3-py3-none-any.whl Installing collected packages: keras-preprocessing, astor, wheel, absl-py, werkzeug, protobuf, grpcio, zipp, typing-extensions, importlib-metadata, markdown, tensorboard, gast, cached-property, h5py, keras-applications, mock, tensorflow-estimator, termcolor, tensorflow Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Applications/freesurfer/7.1.0/python/lib/python3.6/site-packages/keras_preprocessing' Consider using the `--user` option or check the permissions.
Not sure what the EnvironmentError is? The myenv was set up as: conda create -n myenv python=3.6 conda activate myenv
Many thanks.
AJ
On Fri, Apr 16, 2021 at 11:38 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionMaybe you want to check your .NET core version?
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/16YLb2p61r_SvQuTCaHVHByi47bWa-2dctch6OK83PyEKii... https://secure-web.cisco.com/1yA0JP579_nnFgIsajBEG82WAZ8ZXFFAjhKmNhWALkdw3hWQHGEcHyIQn9f2Zja-3VCQLCFm9O0vC7xCZ_M4GHuJonItW4QLqSd4D3b7dVWPWb8b-NWodb-k9cpmqMdEGAH3pZnQ3hXuGkzltwOzrIGPZTkE_T-1ht-5GhHd-1bwYhz42vrq_kA885Iex-1TOugC-ktILkE7eYWn-UWDgTvloa6sK6PzcGTuCKH2N64-fOBxvnMYUo0COaP98cZrVV9ryDBJqEZBKm0-XQigEsA/https%3A%2F%2Fgithub.com%2Fdotnet%2Fcore%2Fissues%2F4005
On Sat, 17 Apr 2021, 09:33 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry, but I get the same error after conda create -n myenv python=3.6 conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1d0xIFUJhCuEZg4krNd_FbPcuVrZah1LWsz0Jb0ywGSc5gd... https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1juDksa4f_LCZUi1tgwTmKLJREme1A5ZUGVDVZl1czJ4PF_... https://secure-web.cisco.com/1RMFXu4xTNiyrlVHbqnFhCp06zcdACw-b85vgi-wBoMDkIycA4pXi8xb5Wd97atgVnp5x1tGG6PrqPcH-AtQi2iMfbdY1Hw2Sh4Z52sW5U1LhBKxPYiFJmB5wwdVjaU0Rx-TmaoQbeLMVz8tugeVp4e8dC8_kMIw50hrEk3rEpbLBo0TFyMSHe_Jn2n63vW6ywfiywtr0B0rzMLTHwI2e9NvDZRzP8YZtbnnN2N86u-WsnyGSK2flOryf3YPYw5tM4zQ3ADoIs_hoKasrRLCYmQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1LAQ7E7WSkFs99oFIxXNeaoZArgs7GpKvuq1v0EaZrzeRH2... https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qDSltc0yDQeHeUNdpQb6xWEJmNcsc94e747p1zYGWBjD21VPp6A5JyBE472z3_9IsJSimgpwQsjJIr5FajJz0wtLKMvndRW6qIa2Vlr-e4OGId3NHIK-kauEd8DM6nvBGLFM8zKN0ofVgT4Y1PF6YR5ILpi3vobatS3Y5I6gOgTMpRE_M3dSQDQBVszLjLxGYtvREzN4DOmouqfpE3JEbicX7a4kNtNnhdVaSAwXnw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1f44I_5Mq83iWLaR-WGf1hnOVa1UVrOhmRgeI_S4IMXi1Ui... https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1BTl2PYbav8qg92zYxnrRL-tR8RTIri--_-TJTsdjmqEDEs... https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1kSqFjowprdgQBviwtJkI4VrdjQahliKFXnuIF17LMeKdzQ... https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L8Xi_mbBEK_PuGPdHzwkLTXtka2Kc4TzLTY1YLvwrm5DOV... https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1UMmg1ZpeY5Ht_8parEcyFEQuaDP1Jn-zPq5YGOP2aXO9Ir... https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1tqxoOJ0fpbjDY9TrTwvxaLaNMVHZzWj_AmlcRgRUkUh3eZ... https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1jeNMjLaf5vUaDMy50rDgt3LqQT-twCrr5YXrccqv50k22d... https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-A_0weszCuFv5Tff7grqDDIKGKtlbSDhwsaIGSsmCQBIvr... https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote:
thank you so much. I just installed conda. (base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2 Is myenv /Aplications/freesurfer/7.1.0 thank you. aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com wrote:
> External Email - Use Caution > > 1. Make sure you have conda installed > 2. In your terminal, then > > conda create -n myenv python=3.6 > conda activate myenv > > 3. Then you should be able to install TF 1.13 > > On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote: > >> External Email - Use Caution >> >> sorry for being non-tech, but how do I exactly do creating a conda >> venv with Python 3.6. >> many thanks >> aj >> >> On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com >> wrote: >> >>> External Email - Use Caution >>> >>> Hi AJ, >>> >>> So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. >>> Python >=3.7 only supports TF2. Can you try creating a conda venv with >>> Python 3.6 and try again? >>> >>> On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote: >>> >>>> External Email - Use Caution >>>> >>>> Thank you so much for your help. >>>> Here's the error: >>>> MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 >>>> Collecting tensorflow==1.15 >>>> Using cached *MailScanner has detected a possible fraud >>>> attempt from "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1slSNRpfdIFS4itgOg92lLSvw1x3btf3Rm9KRRloVUZnpvV... >>>> https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl >>>> Requirement already satisfied: six>=1.10.0 in >>>> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >>>> (1.14.0) >>>> Collecting keras-applications>=1.0.8 (from tensorflow==1.15) >>>> Using cached *MailScanner has detected a possible fraud >>>> attempt from "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1LAQ7E7WSkFs99oFIxXNeaoZArgs7GpKvuq1v0EaZrzeRH2... >>>> https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl >>>> Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) >>>> Downloading *MailScanner has detected a possible fraud attempt >>>> from "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1xS--a_OQwH9TAJwOgq6VK-Xq6bwXa6rRLkvAXXXTNzcUWw... >>>> https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl >>>> (503kB) >>>> 100% |████████████████████████████████| 512kB 5.8MB/s >>>> Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) >>>> Downloading *MailScanner has detected a possible fraud attempt >>>> from "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/19hTXWvVXQ9ihyRlZoEeT1tUI06ELXzfOWsCP4CKa3uXm3X... >>>> https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl >>>> (65kB) >>>> 100% |████████████████████████████████| 71kB 13.9MB/s >>>> Requirement already satisfied: numpy<2.0,>=1.16.0 in >>>> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >>>> (1.18.4) >>>> Collecting absl-py>=0.7.0 (from tensorflow==1.15) >>>> Using cached *MailScanner has detected a possible fraud >>>> attempt from "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1L8Xi_mbBEK_PuGPdHzwkLTXtka2Kc4TzLTY1YLvwrm5DOV... >>>> https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl >>>> Collecting wrapt>=1.11.1 (from tensorflow==1.15) >>>> Using cached *MailScanner has detected a possible fraud >>>> attempt from "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1n9TxzArSXNSPUHBYWJiGK1USy_ClEcSi1B6irlHNKrswzf... >>>> https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz >>>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>>> Referenced from: >>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>> Expected in: /usr/lib/libSystem.B.dylib >>>> >>>> dyld: Symbol not found: _utimensat >>>> Referenced from: >>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>> Expected in: /usr/lib/libSystem.B.dylib >>>> >>>> Abort trap: 6 >>>> >>>> >>>> >>>> On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < >>>> AHOOPES@mgh.harvard.edu> wrote: >>>> >>>>> Hi AJ, >>>>> >>>>> >>>>> >>>>> Freesurfer ships its own python distribution, so it doesn’t >>>>> matter what you have installed on your system. Can you let us know the >>>>> specific version of macOS you are using and send the full error report from >>>>> pip? >>>>> >>>>> >>>>> >>>>> Thanks >>>>> >>>>> Andrew >>>>> >>>>> >>>>> >>>>> *From: *freesurfer-bounces@nmr.mgh.harvard.edu < >>>>> freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < >>>>> ajcns1969@gmail.com> >>>>> *Date: *Friday, April 16, 2021 at 11:56 AM >>>>> *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu >>>>> *Subject: *Re: [Freesurfer] error installing tensorflow >>>>> >>>>> * External Email - Use Caution * >>>>> >>>>> Hi, >>>>> >>>>> I have python both versions of python installed: >>>>> >>>>> MacBook-Pro-4:~ AJ$ python3 --version >>>>> Python 3.9.4 >>>>> MacBook-Pro-4:~ AJ$ python --version >>>>> Python 2.7.10 >>>>> >>>>> >>>>> >>>>> when installing fspython -m pip install tensorflow==1.13.1, I >>>>> get the error: >>>>> >>>>> dyld: Symbol not found: _utimensat >>>>> Referenced from: >>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>> >>>>> Abort trap: 6 >>>>> >>>>> >>>>> >>>>> Is the issue that freesurfer is looking for python3? I am not >>>>> sure how to get past this installation of tensorflow? >>>>> >>>>> Thank you for your help. >>>>> >>>>> AJ >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> On Fri, Apr 16, 2021 at 12:58 AM Vishnu S < >>>>> vishnudaboss@gmail.com> wrote: >>>>> >>>>> * External Email - Use Caution * >>>>> >>>>> Can you try downgrading to python 3.6 in a conda env? Python 3.7 >>>>> support only TF 2.0 and higher. >>>>> >>>>> >>>>> >>>>> On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote: >>>>> >>>>> * External Email - Use Caution * >>>>> >>>>> Hi, >>>>> >>>>> >>>>> >>>>> I am having trouble installing: fspython -m pip install >>>>> tensorflow==1.13.1 >>>>> >>>>> Not sure what the issue is. Any help would be greatly >>>>> appreciated. >>>>> >>>>> best >>>>> >>>>> AJ >>>>> >>>>> Error message while installing: >>>>> >>>>> >>>>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>>>> Referenced from: >>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>> >>>>> dyld: Symbol not found: _utimensat >>>>> Referenced from: >>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>> >>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> *MailScanner has detected a possible fraud attempt from >>>>> "secure-web.cisco.com" claiming to be* >>>>> https://secure-web.cisco.com/1vvZGgKZVj-CtqUphDMIwxGswN3LxWl_1r6v_VepBICX4W7... >>>>> 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https://secure-web.cisco.com/15Mi3hxeDDGFfvS_iDtAMO30EQeOm-pv_cV-Tx6Tvt0A-XUAU6tnccwVldP4WAeO7j2U-jezlH3TitYyMlaTcn1zsm8KuVK2Hr63TCws2ltzwsznvIHeMcR1aiNeENbpj3INJ0_LLxh3cUinqEwvaa9mdl-yOOFg8Sc6Ff9Va7pprtd8ua6EkrqQ0H9qR3wB2nXTpxmBzw_i8rdVKH-SAEQoLUNA75lgzBelEYkVnNzUZSI9lroVmv8KNK2GUF4-Dy6JPpW6kHtdYMBkiUmX1uA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> *MailScanner has detected a possible fraud attempt from >>>> "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1vvZGgKZVj-CtqUphDMIwxGswN3LxWl_1r6v_VepBICX4W7... >>>> 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External Email - Use Caution
I greatly appreciate your help, Vishnu.
This is the error I get now.:
(base) MacBook-Pro-4:aseg2620145_2018 AJ$ conda activate myenv
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$ fspython -m pip install tensorflow==1.13.1 --user admin
Requirement already satisfied: tensorflow==1.13.1 in /Users/AJ/.local/lib/python3.6/site-packages (1.13.1)
Requirement already satisfied: admin in /Users/AJ/.local/lib/python3.6/site-packages (0.0.1)
Requirement already satisfied: absl-py>=0.1.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.12.0)
Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0)
Requirement already satisfied: termcolor>=1.1.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.1.0)
Requirement already satisfied: wheel>=0.26 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.36.2)
Requirement already satisfied: gast>=0.2.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.4.0)
Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4)
Requirement already satisfied: tensorflow-estimator<1.14.0rc0,>=1.13.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.13.0)
Requirement already satisfied: protobuf>=3.6.1 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (3.15.8)
Requirement already satisfied: grpcio>=1.8.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.37.0)
Requirement already satisfied: keras-applications>=1.0.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.0.8)
Requirement already satisfied: astor>=0.6.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.8.1)
Requirement already satisfied: keras-preprocessing>=1.0.5 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.1.2)
Requirement already satisfied: tensorboard<1.14.0,>=1.13.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.13.1)
Requirement already satisfied: mock>=2.0.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) (4.0.3)
Requirement already satisfied: h5py in /Users/AJ/.local/lib/python3.6/site-packages (from keras-applications>=1.0.6->tensorflow==1.13.1) (3.1.0)
Requirement already satisfied: markdown>=2.6.8 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.3.4)
Requirement already satisfied: werkzeug>=0.11.15 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (1.0.1)
Requirement already satisfied: cached-property; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) (1.5.2)
Requirement already satisfied: importlib-metadata; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (4.0.0)
Requirement already satisfied: typing-extensions>=3.6.4; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.7.4.3)
Requirement already satisfied: zipp>=0.5 in /Users/AJ/.local/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.4.1)
You are using pip version 18.1, however version 21.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$ run_samseg --input 3DT1_output.nii FLAIR_reg.nii --pallidum-separate --lesion --lesion-mask-pattern 0 1 --output /samsegOutput/
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:526: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:527: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:528: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:529: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:530: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:535: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
Traceback (most recent call last):
File "/Applications/freesurfer/7.1.0//python/scripts/run_samseg", line 61, in <module>
os.makedirs(args.outputDirectory, exist_ok=True)
File "/Applications/freesurfer/7.1.0//python/lib/python3.6/os.py", line 220, in makedirs
mkdir(name, mode)
OSError: [Errno 30] Read-only file system: '/samsegOutput/'
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$
On Sun, Apr 18, 2021 at 9:26 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionNo instead of --admin permissions it would be --user
On Mon, 19 Apr 2021, 07:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you for your response.
Would that script be fspython -m pip install tensorflow==1.13.1 --admin permissions
On Sat, Apr 17, 2021, 20:33 Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionCan you try running the same command with the --user flag (admin permissions)?
On Sun, 18 Apr 2021, 00:40 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you for your help. I think I'm getting closer to installing tensor flow. 1-as you suggested: installed .NET
(myenv) MacBook-Pro-4:~ AJ$ dotnet --info .NET SDK (reflecting any global.json): Version: 5.0.202 Commit: db7cc87d51
Runtime Environment: OS Name: Mac OS X OS Version: 10.15 OS Platform: Darwin RID: osx.10.15-x64 Base Path: /usr/local/share/dotnet/sdk/5.0.202/
Host (useful for support): Version: 5.0.5 Commit: 2f740adc14
.NET SDKs installed: 5.0.202 [/usr/local/share/dotnet/sdk]
.NET runtimes installed: Microsoft.AspNetCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.AspNetCore.App] Microsoft.NETCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.NETCore.App]
To install additional .NET runtimes or SDKs: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1SkahMrh_ZVdR2haPFWma-RzDbjkYGi6VzagTFYyfeqEBTK... https://secure-web.cisco.com/1OxYkG-3ytzUXBmp6iwhX6GTNcJNN9ebFt06hE_vUaohhHxw1akcr8GYz9dMHjSFShk3tayfQZ7hxie3xKH-wBvyKLXSa9eM-CAr65Rb6wh5-YVoUJXGOXkv4iphdq8gJ-S_GeccsJdQsQQCrKBO8J61KZaaODZYIS8Fdd1apGSdI_ZTKf0q6T3j4fL28ET4qHARQYQEEOybeBDgMpfwDjLgGCGigsLKBNRHQg-HZazd6jsjnIhYf99CVKn7tuO-_Bp48z3tNPP3csglBVECo6A/https%3A%2F%2Faka.ms%2Fdotnet-download
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Hqh7XyAd2HEuO0ZMrHJpnkhw2M38AzXem4G1odrBdQt8Ma... https://secure-web.cisco.com/1CcF2y2q_HUgQ439LsQWK2Zie3vsvuCSIbTBcN6hC5UjggKTpfnqciQfitLK94Cw98fB3eTE02Se_4X7d6r9EmPPV7qNBG8aUK5IfJhLgsgtwqzKTDAMS2CCLf1lAPHtv_Eog-Er9gKcR5lxyg_5TEbEuaflWB4bFmLf6DzFSsLTNXImvgbVCBYvOImkdU_mM9szbXcNtnPoAv8vw6aBbB4BEYHazwBK3237PS1k2EgU8rQ6_HniTkyf5Mo4bN467Kp7RseIKlAN95SbyVmtqOw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1_cTyh5F-B0gHPrlXS_BldRpHWa9R5M8Hwi2tUilfbdRLlX... https://secure-web.cisco.com/19q916xZq2SAv6hsVsFXQmN4PFDz1V4xO9lrcrnOcAMRMlAsG944eiR9fVN9QiuOswvieotJP-xPUCfbIb2v7s1yIOl5zeg4WD63PdJ7eZXRH86JhMmV29HK4hOBKiN1URbSE8WRgPvRtDUtk5CzAna0UmwMqdZ-ITHd3yrS0MQ9aImDNqyIp-IpLtPUZ2eCUIKbuDJCuZwg3QdYpuN7HIoeq6s4AULrS2oI364b7ZDDBEii6z3ennBy2TFr3de9Sec-UTvdCxrrj6n9oCAoIcg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting astor>=0.6.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1yopYShOmQ8fUQyzmVd4ua1Rg6sMmapoBHFgNd7Xlb4NwE6... https://secure-web.cisco.com/1GZfov0hn7NAdkr_BPor4qry7T8qjxb6-lgnrP_Zlek817tEFL5I8aHTYnVPpPhwz1iPH5v5euFFPVdhAgDP8t0nty-5xYaYlVVy3eZaAnApeRXXzOxja_8LManl_95FKy3-9_g5M4cDaz86Q4HN172Brd29Rx1zSptbSINonnMywazbMTXnZClepaikxo7_Smchhm_zzLOPTd8lVWvAkwwXO96tqSKi51aV0o0uJkAObAFL6xNH53G4NMXdMbw6KZFDWcD-gBrxKyN7kDwxgBw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fc3%2F88%2F97eef84f48fa04fbd6750e62dcceafba6c63c81b7ac1420856c8dcc0a3f9%2Fastor-0.8.1-py2.py3-none-any.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/14RfU1h69gWSpzmspa-ICJGbhE-T3QPFblIP_Vu-2-RDbPt... https://secure-web.cisco.com/1n1Rm9tZILMvzB6BSjUNGK8m9OZ1sYvuLUAJFQ7JWxJc7JrBZmS9MvCJHNzr11J_SaFeBMxN2xlYJ3TF11qQcs1tIt57nERIhuAT-h0Zr4aGh6yG5_fmDP7jk_or3NdmRN5J2OEpp9j1hzSUeD9Mw1fABRHF8G9RaoPf16v-D-_WKuwmLIHW8ywMAo43aCFDP_7iwXqoSlpJkQp8EeLWTgpuQ5XuSepBQUsjgaxR_5cMlBnccgRVtXAj5LiYcQ3Xvn9_om4l3Ab7XQ5L6Bjun3Q/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Tm7o8PqEOezxIJXbrjD70h4RgfIo1veK9CF6AXqs-rwic1... https://secure-web.cisco.com/1_zAg6j0XNd0Wu7pr0WG0qrX50QCFuLUvOZHbXSrC-M7ZdtSbn-ukmQKHeTL1_9k7WsUzhJRowGKXf9xEtEmm0G4rr7Eq46fQp4nwztAW-_IpyX59QymsvBC8x5e1rk7zej2UcHbM9l0oyH3K1NirbybXagQyM_n-Bsr9hoQOpSgAcL4Qp7tHtUWYyxA5ZquAhW84dV_VmxRwCf_hyhgFExlf18-LUQhF12xrLBARGd7Eb6XMd3PwUkVPqGAeEBnsIXdb3u7wEV7FKRovsKHQAQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1gOtrsPnEumF7LbD1SbW3HJaJ8EQAEV61JpLpHg2ba681MC... https://secure-web.cisco.com/1JNkkdPQlC1yKIriRIhp7_J7gPdZnInNt0X_J4HID6QDVmS3SD1rsTHVUS3VhuQ6gL1H0vyp3_uZJgweWQRt1Q0KCuQnERpBFeliNJ-UBBKUmzJ0qlfNs-YnZ1Vl5aowX5PTO5wdZOecSteh2GLUz4hY2gnWrQS7grP6t80R_4bs4TmjWp49r0zT0I-UbniEN17867ODtzwdRHj2J5UK5F13P5-mXbonBFgpRKCKr-pYLt4ouGQhDdzkyPhk30Bvw-hJfc03KqUOsmt3r5d1fQg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zkXdmAHqFwOL7PR_k1ZvURUxIX_IEZieXaC8XnUdnBue6H... https://secure-web.cisco.com/1G9XEDCnxN1YTZpmYbtxq6mithjtSrUKzzlUKdp7sPNqOF2juoi7YDowWfrC1UIWvrBLmJJxGMQY8n9fDrkR1LmwMMeVXd7k4qPd3uDCB5eAfLaHJF3ExaG1ykMjX2gDbHXQWwsijoqkCLddbbOv3U5Adsh5PU5Lmkp8JbTrp9VSy0Q5xWWplvncNv3L-j0Ksfw-lWW27X1rJSNtNyiaR3RHGgC0oJ0bmx0G8-olBXWxFopTlfBBhzrGOBQcJdllQHuMSp0A06p4rf-VihzzQog/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/19qWXR9kkMqFxXBnIFtxMDYsJgKXQ9LbrTdL4ChkS1eB9aX... https://secure-web.cisco.com/1LSmKKFUaSRpBqvdN0yn79KX75bzxAKJUc_HFu0Y3uw5-POpZ_8opu7YjQjGVMnUIA-1EvvbrxbBtg1yVinl31BNendPrHiwFvD1IRg0hNNHKH191IA7UEFhmt4qCMN0x-ktdd8q5vxsdjcRc5c1u-1UjeDRcEZHkZ0IsMOz4S8ENlefPVjyTYb9sj8Sq5eph25ca4qtsB_gF3SS7NF4eQDdePKmymCcAEyDJezt65Y5r1vHfCDUY413I1TkK1MuZPxzU1mep96u3RQBcf_XHAg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1WKgOZmkztNkF_MHC-UOpf9rE15NLfTcKriLfNlZOvB5oou... https://secure-web.cisco.com/1Bga0sfCt7q_J4tj0ghWdpdwkA8E3_b3eFMc_2JHyD1Pkq1feK6bI-Ym3bq8vVSRVRgKs64HrQvgLxEBwImuCaEwYCexNhbmDpmqvsxS9sPxtdTg8TbBMdvKao2ewXM6Qt5MNsSc3_zNBl8XyA0eYi6bh3_J2wpdfF-_OgtAHDrnm3QZVEydqLEZskVps60rHDoindqIfoN_mnMc8MVV4OfwYAJnz8zGeDaCgeBo7-D1ulneurMJwjkcr5b6n5ATqLvUwKi5F7i65fwal8ztNhA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1NhJVAyasm_ToHSyJiRGW48GU9E_ONv9DjcbHZM1gXhKs4J... https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3RixYDotrwpQoQe1SD5oBkfS-TbVHpaQRNAIAG4GOI9Y923GTU8HsGNZP8Bep11vL_5F4EgdqBbliP2P_M9PFjcTnoUK6eHPCVlbfLnwsYrbaRBLI3HyZ_KbeF3YCSc7aoCuOl4HS54QjLuboHAX3uanjFEZyXFymZ7DMyHN6j_8ANrNyx6djG90bl1S9N-5Tfmm43xE-rBlvFhyBGIS6fLh25QzaYDIKgNflARtA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1aDPvEcm0uAChtH7gleMyErZwQ3EUJi7CU-7-JqRnt7weKx... https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO20VrWZ0eGJ2DItdgkqBvriGiyghm0tWtca_Kfo3IYeuQcUTrEGSxTVYqS-OZI2RVEfnxI8JP4QatZXz2MaLgipbm4c6X-whgbRjaCubKCSTXHJ4QGaluIskA3DOD8239-qEaCphWv5w6qw7Gm-Ba2muPAm9V1udyYNc02k_ptwo1VbahAeds4qlQ-gubY9aG_i7fxtZ5kjACKRRWpDbA8S6Iy01lcYGzNumK3bIlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-IE9wQZK-pCyOdz_-0Om7PMH2TZ3vKWS5cxZpoRCP9eg3G... https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROnyI3SYPV_koPb3DEc1nGgoLTPLZIJizMfjmKf8VeWIZtd3gWldkMJOSOd677YDiWX3UgWGE5yXJY_-99FquKaRnC_UjGPXLMoZAzz13U4R79gp6EEzulMShhVnrpLtZfyzpeYJRB46SmFiN0cmv07E5xmP2LpWVvfN72WrgrM9tETxg0Jwr5Tdgf9YdwkCk1LQbWop03XdmewsbKCUGo1cmD5Jxzge27FE6Gmc5ng/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting werkzeug>=0.11.15 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1v2I0hKFkEOZm5tIVuw9FkOrbF8To05a6YtltF6iiUAQk4Z... https://secure-web.cisco.com/1v1TKMfd_P6zYl4sVFufwS7yxOhly__VEN0VpBYzb6bwG2prRecRPkdyr00F-t2RabUK6JiQYoFF64iNwnVK0AABdBXjKXjeEMwkGq156zlnHKd01qkAOXC_ZdOWYTNyaXJx4MU5yxLSSdDxbMeV9gPNN0ccQZMDQRGg51scpJQ9m2OWY1LBwgzYzG34GcUf4AUr3jDknKDuL609eDXBvacVpr9WqVUxgwXD6ZH8GSgBGVUHjV7ZIuLCt2IC0W92ZSOaz6I5BrErVTWHQ7vzUvg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fcc%2F94%2F5f7079a0e00bd6863ef8f1da638721e9da21e5bacee597595b318f71d62e%2FWerkzeug-1.0.1-py2.py3-none-any.whl Collecting markdown>=2.6.8 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1ouwCDr4R4cKi0-XwSyYm4ahcxPuYuB8MBxc3n9mOEo4Swk... https://secure-web.cisco.com/1-RFQTCupXzUz-iRFbxkS-NKtwbx7gnfDMr8q8symcKVSJCrXUwd_5opYJf4UJN6ql9vPLtWdOq_i1zDgfSCUEo0WCAUgJD671jtmMda6rCAVKK20tGULgybsilZu5Sf_khFfAkdixf76FNcS48MqkSJriH2XaA16A_ekkMdO8Zue-j3tTpgWGPqYS8jK0IbgP_uMay4FwFgfyph1rr0PED1yKTtyXzG8Oxg-Y8sa4ArgWCRCclnySKmfLLxH-FdpRRplyPVcH22nx4on4adqBg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F6e%2F33%2F1ae0f71395e618d6140fbbc9587cc3156591f748226075e0f7d6f9176522%2FMarkdown-3.3.4-py3-none-any.whl Collecting h5py (from keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1TA7UJYUXLJ0dXKzVmTGubGLTKQXheDgOOpeC1geOIXDNie... https://secure-web.cisco.com/131qMp792FRLOMfDTnyQxnXhafBfq6wIOSxbjG3m1Fg_FdFGhK52RjDXV7ZjWXftwpJPiylzWsk_BGg8fhR4bcyM-U2rtn4sficr1zdYMyttrr0LhGabXo94bNQlRm5BWzWmuIpkrzt-J6xMlCqdWtUVBEwg4elmfJiURUf-lcZQIf9AfBWpyL5lKFhmZDWRtLpykkVkFGrfKNEbrVskuiFnYL0AtLFkCHbRJNz1JQU1whng4AjyIe40AC5RALeHO776KePBsGP5RO_tXgoP-Fg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F34%2F8b%2F24796b39111b4a235051003986b1c6d43e8b9699ec5936b642231c101c40%2Fh5py-3.1.0-cp36-cp36m-macosx_10_9_x86_64.whl Collecting mock>=2.0.0 (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1lxDfiNavwwuMzZVvbuPtQHvNF6B1B5dRm0v2QBZOWHA8LL... https://secure-web.cisco.com/15zll9spxR9-xVODAIpHpRMEelwnB6CCFSqbDZakaxUxAM_3tW-BnGJ0ZQX9otv-1XbeiDYxLCP2KpwkR5xkU8HdIj02rQFgakZOKZCWCA1WvEzpUPC2IA9wOTQhHcfdVMnVC-TbdBD7vmHXEX5_y7sWv8LdRCYmvBfWtKsnzm9-ghaV8CD6F9gPaTWwUmWSpUW9i3JlBNSpWSnqalGDMKhNFg0kIZiZPSND3Huq4Ye0fOG-ku-6BmjvtT_2s5IVWQyjN5WenPbn-raMxoq3wlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F5c%2F03%2Fb7e605db4a57c0f6fba744b11ef3ddf4ddebcada35022927a2b5fc623fdf%2Fmock-4.0.3-py3-none-any.whl Collecting importlib-metadata; python_version < "3.8" (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Yxv-_U4wLPaP2lQTXtWEBjeYL89tE3QwWr3suVuYrUSF4Z... https://secure-web.cisco.com/1FXv2-9Xqlf6UO2-XDdnx4NHYzNmTe0FDsnAIkrRYlJq3_5BvYaMKG6oBGgWGELXLtD0SkDqoAN06QPlCETT2WgON2nNFxfWBRk6UPuzjBlSwDhC1VzQ36_IUQCH4es1hDAmLJuV7kLvGhonP4DcGCFWuB-xGfFrg5NDamFEW6zDG0vCq-BOJHtn2uVP_KiMBXtRt8jylBov-JqQfDlsKgapZVcMZe3JsadUVNZs36GJqlsgyCAyFZ136Ko7-KJYp3W_CAdsGWJwdqwywnYFhxQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F52%2Fd0%2Fbdb31463f2d9ca111e39b268518e9baa3542ef73ca449b711a7b4da69764%2Fimportlib_metadata-3.10.1-py3-none-any.whl Collecting cached-property; python_version < "3.8" (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1nbAjapVgyH__iocvkoD_VPrXfuBH3iORMJo7lvYVQ0JaU2... https://secure-web.cisco.com/1uvvHIogRfkxVSdiM8Ew2bQJCSVH5zpq4zRqYs8e9-Shce4jYvPLEwk-6h57FBvpfX3eW9Tp6wb584GNYcnmYsYg3moRoiHdMPvxHGDvsyLtL8qqWyrX0AtVn6ynnZKguvNUcMEiLbovgH4qzAjipahQ-pfQ0rZB1FKqvj2KIhXZJ6KWkhvpTjClapxLQTTeSSiiPYUCU4EHG6yfe9oyzZEtrP9PX8533Wn0F-mhvxmyLJIDrU7T98FU2ij_W4lugOEuE8rl3n5VmAW-lFZevLA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F48%2F19%2Ff2090f7dad41e225c7f2326e4cfe6fff49e57dedb5b53636c9551f86b069%2Fcached_property-1.5.2-py2.py3-none-any.whl Collecting zipp>=0.5 (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Pu8xE6zwqDMSDmWbyS-4FcQBbOzVDGqmyrvEfe2OPec6TS... https://secure-web.cisco.com/1S-t6Pq9hklSG64kPJ8JbEM6bQAlEI-AfoeKiveh3O7QuPljk4xBmeKFBLIGQtnpYi1Q2vCDvaqHUbiQXPycUQqWGAxdO8uq0ZXU_PAfBmVUYYvVdbHix80xsTsZQ4Vb9q-HQLUk1JbFJAllIGU5nIt7wYq-ngRR8gwGw7kBoOqclSjBvtDJVNsE-1avMSDIr9pO8WoSaj5ITN8-G_q43AvMWXBwkS--tIBYIe46FIpxqJygnxxEWG5MvSlhp1tU2AW31_YLCbARXpbGOyZd4sQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F8c%2F715c54e9e34c0c4820f616a913a7de3337d0cd79074dd1bed4dd840f16ae%2Fzipp-3.4.1-py3-none-any.whl Collecting typing-extensions>=3.6.4; python_version < "3.8" (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1VMXkBeROtu4Eyo09_0ThSvTZAvoTBfFp_yLbKGUvzbSrgs... https://secure-web.cisco.com/115oJckN0s7VM7FDbFcbn-TS618Z2BvhMz22XDzlZrFoxtmEHS1sdgy2S0GUwRnyY0ivKAXWmMmrDowMvD4_fHwknWsW2zaoR6gPoMWi4nHISV1DY-3xzJ4KqFKkdycAC-YRBGAGXqxb5VS9T2dp_1KcQG9NILrdgO7oKpKb8VTyON3M7AVCyMPO3sHHUY3bhW_t0cOwv0YmP7eFV1l5mk9ZXI1cbodGu3qLBSm40c6oSk9arPUkb848MkRUMF0MkjjJcOHsGrm7wQ4aax-AdHA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F60%2F7a%2Fe881b5abb54db0e6e671ab088d079c57ce54e8a01a3ca443f561ccadb37e%2Ftyping_extensions-3.7.4.3-py3-none-any.whl Installing collected packages: keras-preprocessing, astor, wheel, absl-py, werkzeug, protobuf, grpcio, zipp, typing-extensions, importlib-metadata, markdown, tensorboard, gast, cached-property, h5py, keras-applications, mock, tensorflow-estimator, termcolor, tensorflow Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Applications/freesurfer/7.1.0/python/lib/python3.6/site-packages/keras_preprocessing' Consider using the `--user` option or check the permissions.
Not sure what the EnvironmentError is? The myenv was set up as: conda create -n myenv python=3.6 conda activate myenv
Many thanks.
AJ
On Fri, Apr 16, 2021 at 11:38 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionMaybe you want to check your .NET core version?
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1v2FLbL8huhpL6lrOxCx0EvG1ow4BXJben8DJpt4xlZ9Kfd... https://secure-web.cisco.com/1yA0JP579_nnFgIsajBEG82WAZ8ZXFFAjhKmNhWALkdw3hWQHGEcHyIQn9f2Zja-3VCQLCFm9O0vC7xCZ_M4GHuJonItW4QLqSd4D3b7dVWPWb8b-NWodb-k9cpmqMdEGAH3pZnQ3hXuGkzltwOzrIGPZTkE_T-1ht-5GhHd-1bwYhz42vrq_kA885Iex-1TOugC-ktILkE7eYWn-UWDgTvloa6sK6PzcGTuCKH2N64-fOBxvnMYUo0COaP98cZrVV9ryDBJqEZBKm0-XQigEsA/https%3A%2F%2Fgithub.com%2Fdotnet%2Fcore%2Fissues%2F4005
On Sat, 17 Apr 2021, 09:33 AJ, ajcns1969@gmail.com wrote:
External Email - Use Cautionsorry, but I get the same error after conda create -n myenv python=3.6 conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Hqh7XyAd2HEuO0ZMrHJpnkhw2M38AzXem4G1odrBdQt8Ma... https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1_cTyh5F-B0gHPrlXS_BldRpHWa9R5M8Hwi2tUilfbdRLlX... https://secure-web.cisco.com/1RMFXu4xTNiyrlVHbqnFhCp06zcdACw-b85vgi-wBoMDkIycA4pXi8xb5Wd97atgVnp5x1tGG6PrqPcH-AtQi2iMfbdY1Hw2Sh4Z52sW5U1LhBKxPYiFJmB5wwdVjaU0Rx-TmaoQbeLMVz8tugeVp4e8dC8_kMIw50hrEk3rEpbLBo0TFyMSHe_Jn2n63vW6ywfiywtr0B0rzMLTHwI2e9NvDZRzP8YZtbnnN2N86u-WsnyGSK2flOryf3YPYw5tM4zQ3ADoIs_hoKasrRLCYmQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/19qWXR9kkMqFxXBnIFtxMDYsJgKXQ9LbrTdL4ChkS1eB9aX... https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qDSltc0yDQeHeUNdpQb6xWEJmNcsc94e747p1zYGWBjD21VPp6A5JyBE472z3_9IsJSimgpwQsjJIr5FajJz0wtLKMvndRW6qIa2Vlr-e4OGId3NHIK-kauEd8DM6nvBGLFM8zKN0ofVgT4Y1PF6YR5ILpi3vobatS3Y5I6gOgTMpRE_M3dSQDQBVszLjLxGYtvREzN4DOmouqfpE3JEbicX7a4kNtNnhdVaSAwXnw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1gOtrsPnEumF7LbD1SbW3HJaJ8EQAEV61JpLpHg2ba681MC... https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1WKgOZmkztNkF_MHC-UOpf9rE15NLfTcKriLfNlZOvB5oou... https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zkXdmAHqFwOL7PR_k1ZvURUxIX_IEZieXaC8XnUdnBue6H... https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Tm7o8PqEOezxIJXbrjD70h4RgfIo1veK9CF6AXqs-rwic1... https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1aDPvEcm0uAChtH7gleMyErZwQ3EUJi7CU-7-JqRnt7weKx... https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/14RfU1h69gWSpzmspa-ICJGbhE-T3QPFblIP_Vu-2-RDbPt... https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1-IE9wQZK-pCyOdz_-0Om7PMH2TZ3vKWS5cxZpoRCP9eg3G... https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1NhJVAyasm_ToHSyJiRGW48GU9E_ONv9DjcbHZM1gXhKs4J... https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote:
> thank you so much. I just installed conda. > (base) MacBook-Pro-4:~ AJ$ conda -V > conda 4.9.2 > Is myenv /Aplications/freesurfer/7.1.0 > thank you. > aj > > On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com > wrote: > >> External Email - Use Caution >> >> 1. Make sure you have conda installed >> 2. In your terminal, then >> >> conda create -n myenv python=3.6 >> conda activate myenv >> >> 3. Then you should be able to install TF 1.13 >> >> On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote: >> >>> External Email - Use Caution >>> >>> sorry for being non-tech, but how do I exactly do creating a conda >>> venv with Python 3.6. >>> many thanks >>> aj >>> >>> On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com >>> wrote: >>> >>>> External Email - Use Caution >>>> >>>> Hi AJ, >>>> >>>> So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. >>>> Python >=3.7 only supports TF2. Can you try creating a conda venv with >>>> Python 3.6 and try again? >>>> >>>> On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote: >>>> >>>>> External Email - Use Caution >>>>> >>>>> Thank you so much for your help. >>>>> Here's the error: >>>>> MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 >>>>> Collecting tensorflow==1.15 >>>>> Using cached *MailScanner has detected a possible fraud >>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>> https://secure-web.cisco.com/1p348GeULQEf30D-2vv-85ivJGLZiNfVGPPSmFPqkYkhaL-... >>>>> https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl >>>>> Requirement already satisfied: six>=1.10.0 in >>>>> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >>>>> (1.14.0) >>>>> Collecting keras-applications>=1.0.8 (from tensorflow==1.15) >>>>> Using cached *MailScanner has detected a possible fraud >>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>> https://secure-web.cisco.com/19qWXR9kkMqFxXBnIFtxMDYsJgKXQ9LbrTdL4ChkS1eB9aX... >>>>> https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl >>>>> Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) >>>>> Downloading *MailScanner has detected a possible fraud >>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>> https://secure-web.cisco.com/1a6h6McaXOrSv4WmGn0Pneh0Y-G9sCnUcZ3taum21sVhC-M... >>>>> https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl >>>>> (503kB) >>>>> 100% |████████████████████████████████| 512kB 5.8MB/s >>>>> Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) >>>>> Downloading *MailScanner has detected a possible fraud >>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>> https://secure-web.cisco.com/1hyAeqTdUZWP2TXZ7P3G0lyrsJW_-trO6cqrPAKFUTZ1Ppo... >>>>> https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl >>>>> (65kB) >>>>> 100% |████████████████████████████████| 71kB 13.9MB/s >>>>> Requirement already satisfied: numpy<2.0,>=1.16.0 in >>>>> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >>>>> (1.18.4) >>>>> Collecting absl-py>=0.7.0 (from tensorflow==1.15) >>>>> Using cached *MailScanner has detected a possible fraud >>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>> https://secure-web.cisco.com/1Tm7o8PqEOezxIJXbrjD70h4RgfIo1veK9CF6AXqs-rwic1... >>>>> https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl >>>>> Collecting wrapt>=1.11.1 (from tensorflow==1.15) >>>>> Using cached *MailScanner has detected a possible fraud >>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>> https://secure-web.cisco.com/1QGwdGLaHsgHRqwN9nvuVyZKG8CfJlXMnmtG3pCvgawblQx... >>>>> https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz >>>>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>>>> Referenced from: >>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>> >>>>> dyld: Symbol not found: _utimensat >>>>> Referenced from: >>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>> >>>>> Abort trap: 6 >>>>> >>>>> >>>>> >>>>> On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < >>>>> AHOOPES@mgh.harvard.edu> wrote: >>>>> >>>>>> Hi AJ, >>>>>> >>>>>> >>>>>> >>>>>> Freesurfer ships its own python distribution, so it doesn’t >>>>>> matter what you have installed on your system. Can you let us know the >>>>>> specific version of macOS you are using and send the full error report from >>>>>> pip? >>>>>> >>>>>> >>>>>> >>>>>> Thanks >>>>>> >>>>>> Andrew >>>>>> >>>>>> >>>>>> >>>>>> *From: *freesurfer-bounces@nmr.mgh.harvard.edu < >>>>>> freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < >>>>>> ajcns1969@gmail.com> >>>>>> *Date: *Friday, April 16, 2021 at 11:56 AM >>>>>> *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu >>>>>> *Subject: *Re: [Freesurfer] error installing tensorflow >>>>>> >>>>>> * External Email - Use Caution * >>>>>> >>>>>> Hi, >>>>>> >>>>>> I have python both versions of python installed: >>>>>> >>>>>> MacBook-Pro-4:~ AJ$ python3 --version >>>>>> Python 3.9.4 >>>>>> MacBook-Pro-4:~ AJ$ python --version >>>>>> Python 2.7.10 >>>>>> >>>>>> >>>>>> >>>>>> when installing fspython -m pip install tensorflow==1.13.1, I >>>>>> get the error: >>>>>> >>>>>> dyld: Symbol not found: _utimensat >>>>>> Referenced from: >>>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>>> >>>>>> Abort trap: 6 >>>>>> >>>>>> >>>>>> >>>>>> Is the issue that freesurfer is looking for python3? I am not >>>>>> sure how to get past this installation of tensorflow? >>>>>> >>>>>> Thank you for your help. >>>>>> >>>>>> AJ >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> On Fri, Apr 16, 2021 at 12:58 AM Vishnu S < >>>>>> vishnudaboss@gmail.com> wrote: >>>>>> >>>>>> * External Email - Use Caution * >>>>>> >>>>>> Can you try downgrading to python 3.6 in a conda env? Python >>>>>> 3.7 support only TF 2.0 and higher. >>>>>> >>>>>> >>>>>> >>>>>> On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote: >>>>>> >>>>>> * External Email - Use Caution * >>>>>> >>>>>> Hi, >>>>>> >>>>>> >>>>>> >>>>>> I am having trouble installing: fspython -m pip install >>>>>> tensorflow==1.13.1 >>>>>> >>>>>> Not sure what the issue is. Any help would be greatly >>>>>> appreciated. >>>>>> >>>>>> best >>>>>> >>>>>> AJ >>>>>> >>>>>> Error message while installing: >>>>>> >>>>>> >>>>>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>>>>> Referenced from: >>>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>>> >>>>>> dyld: Symbol not found: _utimensat >>>>>> Referenced from: >>>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>>> >>>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> *MailScanner has detected a possible fraud attempt from >>>>>> "secure-web.cisco.com" claiming to be* >>>>>> https://secure-web.cisco.com/1hahjVI93DmoNeXfrIoQXqdnA42GCbAOy8RpSGwLBGoqeqF... >>>>>> 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https://secure-web.cisco.com/1thz0yltdMgkYjHj_yl7NWAgTjAKR3mIya3jP_-NSm1yrX-vZ6JhjawzykczGn2QH-yZWySshjrV83ewzIv39MenpaT-wyBQ1IyccHBAqSeK7qe9kCYv0hqLHF8Jl8AOXuyxlbQgz7EEaD-Vh3D0-anBgWRHNQkRF8Rl0W7Wdr-ISk6O2knKd8StGriD11KOGguSV_P5GInqwWskvA6LkM4mEdjA5Ef6pJxtYpDvl4ixgADqF2Jkq7XwuKube-YGw72Hk3UuyF7hVEA5PxeZ4FQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> *MailScanner has detected a possible fraud attempt from >>>>>> "secure-web.cisco.com" claiming to be* >>>>>> https://secure-web.cisco.com/1hahjVI93DmoNeXfrIoQXqdnA42GCbAOy8RpSGwLBGoqeqF... >>>>>> https://secure-web.cisco.com/15Mi3hxeDDGFfvS_iDtAMO30EQeOm-pv_cV-Tx6Tvt0A-XUAU6tnccwVldP4WAeO7j2U-jezlH3TitYyMlaTcn1zsm8KuVK2Hr63TCws2ltzwsznvIHeMcR1aiNeENbpj3INJ0_LLxh3cUinqEwvaa9mdl-yOOFg8Sc6Ff9Va7pprtd8ua6EkrqQ0H9qR3wB2nXTpxmBzw_i8rdVKH-SAEQoLUNA75lgzBelEYkVnNzUZSI9lroVmv8KNK2GUF4-Dy6JPpW6kHtdYMBkiUmX1uA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> *MailScanner has detected a possible fraud attempt from >>>>> "secure-web.cisco.com" claiming to be* >>>>> https://secure-web.cisco.com/1hahjVI93DmoNeXfrIoQXqdnA42GCbAOy8RpSGwLBGoqeqF... >>>>> https://secure-web.cisco.com/1moGJSKrlAv__zKfFKWKLJ7M83P3Xw4JOHTCh6tbKrdBqMc1NsPo1m6V5H8ijpyI6MsP7ymnbc3VKfSSb8eJ2XrvGs2QEGHlvyI4QkAyVprpKW_uacCWiTURMFfN9eT-NLhF0SbFBBtgM-Y9gtk6kxPfoiNKEKtpx0oO4by6comkJhLK9quf6D1jx_Muqab0SvSIR-ViJ6TSMIdpjN-6lhbl-kFwVKlBaE5XU-m0LSmmre1T_NN_vIJsp-Vx6_IiefU9-oO-ofy1vaL2YrmngOw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> *MailScanner has detected a possible fraud attempt from >>>> "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1hahjVI93DmoNeXfrIoQXqdnA42GCbAOy8RpSGwLBGoqeqF... >>>> https://secure-web.cisco.com/1gxEq9RTXzjJyTM_I59m3P05jiMMmW-zjC4xlr5PqLfAkeeUttgmOijncAOf6omd2IK_nL_SCfnwu0l7rVodyvBZQ8UR8_jO7A0_hNudIRo_n6px8Cy6W_YRwJlkUWnN6TGyomYxaSw1-0hAdJcF0FBtACHeM1VCtO9zgmA-tirhiSifmfSkDpkY3CBHbr4gQ-Y1V-KRsopE113rvx0b3fhy2CvB3VrM8c523XSvgJVmFTcpUT7WqCLQg5Nf_k86e4HMY3uUfCmO3EcWiNL6mIA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1hahjVI93DmoNeXfrIoQXqdnA42GCbAOy8RpSGwLBGoqeqF... >>> https://secure-web.cisco.com/1vYAfyo16dc3rKqTeir4GG2Ca6Z9reqbEk9je8xLgF18VwRUjT286klvob-lwcQJobZ5eTFp2ask1_-AOUnXiHDPqcWHq_jUPm-vXFQws0M1mj-UE9qXE3QkKlf4wQ6lIxDgGibT-YSWu8C8ezW--ED6CVeVCcLGok2tM5-HIRLMPY3VhHO_1GQEmV_TXkV5TQnGnpHymYP432OWtROK3SmXY2S-X5cdRH4rZTdNSLmVveqrrHEp9svbcRXcsfOY4vZU2LrewFXJVukQdjutvWw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1hahjVI93DmoNeXfrIoQXqdnA42GCbAOy8RpSGwLBGoqeqF... >> https://secure-web.cisco.com/1mvADFrekb5mtfprKjYrFfGWCr1kU6jnqZf9tRG09B1gBtE4JnWNnCe7MaqRMdg_HdEU9DNQO-R3bHCPgDUjlYyUA9YjxSCRnwY_nSl_Kgfg6VG7eJnc5ZV1opTZkeOczbvS-bGGKvXDN_29SPq37fSjjCKFlX7QF1bavYN-2tMl8I8mz1P_0eay8LDzyWWz7HozxbqCVhcW28JPBRQIJaOI507BaNAM4M1AYD7RcLMGW6krgKuGaC07RMuebKLawar8ZVeT_0xeZNyCBa6A9sg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1hahjVI93DmoNeXfrIoQXqdnA42GCbAOy8RpSGwLBGoqeqF... https://secure-web.cisco.com/1nTsvD-T0QbZolTNc06QYMW9tulNlz71vh6y0GC3FpoIfX75y6FhmROtJ5WCUHgUJX1VRCWrR4utxTBgGkKONpbjHGoFWzXV20txwg7JFmoSi0HOsswf3UDqybpmSs51W-3TXdlhjpHm8ngffxhIhADvINE3E8RqNNYNvI-Zo3YagyLpl8YcyJeY-nJLB9GDBQ08LY0xJHzJTZ11dUHOWEvhGdRg5Va7G6mn_Xk9DJIPId7qKKGpm40pHguO-9uiXjjtbSSh-XLPeZ9-GZAjOtA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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Hi Freesurfer, Does anyone know what to do with this error when running run_samseg --input T1.filename FLAIR.filename --pallidum-separate --lesion --lesion-mask-pattern 0 1 --output /samsegOutput/
OSError: [Errno 30] Read-only file system: '/samsegOutput/'
Many thanks. AJ
On Sun, Apr 18, 2021, 21:31 AJ ajcns1969@gmail.com wrote:
I greatly appreciate your help, Vishnu.
This is the error I get now.:
(base) MacBook-Pro-4:aseg2620145_2018 AJ$ conda activate myenv
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$ fspython -m pip install tensorflow==1.13.1 --user admin
Requirement already satisfied: tensorflow==1.13.1 in /Users/AJ/.local/lib/python3.6/site-packages (1.13.1)
Requirement already satisfied: admin in /Users/AJ/.local/lib/python3.6/site-packages (0.0.1)
Requirement already satisfied: absl-py>=0.1.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.12.0)
Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0)
Requirement already satisfied: termcolor>=1.1.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.1.0)
Requirement already satisfied: wheel>=0.26 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.36.2)
Requirement already satisfied: gast>=0.2.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.4.0)
Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4)
Requirement already satisfied: tensorflow-estimator<1.14.0rc0,>=1.13.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.13.0)
Requirement already satisfied: protobuf>=3.6.1 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (3.15.8)
Requirement already satisfied: grpcio>=1.8.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.37.0)
Requirement already satisfied: keras-applications>=1.0.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.0.8)
Requirement already satisfied: astor>=0.6.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.8.1)
Requirement already satisfied: keras-preprocessing>=1.0.5 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.1.2)
Requirement already satisfied: tensorboard<1.14.0,>=1.13.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.13.1)
Requirement already satisfied: mock>=2.0.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) (4.0.3)
Requirement already satisfied: h5py in /Users/AJ/.local/lib/python3.6/site-packages (from keras-applications>=1.0.6->tensorflow==1.13.1) (3.1.0)
Requirement already satisfied: markdown>=2.6.8 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.3.4)
Requirement already satisfied: werkzeug>=0.11.15 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (1.0.1)
Requirement already satisfied: cached-property; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) (1.5.2)
Requirement already satisfied: importlib-metadata; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (4.0.0)
Requirement already satisfied: typing-extensions>=3.6.4; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.7.4.3)
Requirement already satisfied: zipp>=0.5 in /Users/AJ/.local/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.4.1)
You are using pip version 18.1, however version 21.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$ run_samseg --input 3DT1_output.nii FLAIR_reg.nii --pallidum-separate --lesion --lesion-mask-pattern 0 1 --output /samsegOutput/
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:526: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:527: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:528: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:529: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:530: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:535: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
Traceback (most recent call last):
File "/Applications/freesurfer/7.1.0//python/scripts/run_samseg", line 61, in <module>
os.makedirs(args.outputDirectory, exist_ok=True)File "/Applications/freesurfer/7.1.0//python/lib/python3.6/os.py", line 220, in makedirs
mkdir(name, mode)OSError: [Errno 30] Read-only file system: '/samsegOutput/'
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$
On Sun, Apr 18, 2021 at 9:26 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionNo instead of --admin permissions it would be --user
On Mon, 19 Apr 2021, 07:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you for your response.
Would that script be fspython -m pip install tensorflow==1.13.1 --admin permissions
On Sat, Apr 17, 2021, 20:33 Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionCan you try running the same command with the --user flag (admin permissions)?
On Sun, 18 Apr 2021, 00:40 AJ, ajcns1969@gmail.com wrote:
External Email - Use CautionThank you for your help. I think I'm getting closer to installing tensor flow. 1-as you suggested: installed .NET
(myenv) MacBook-Pro-4:~ AJ$ dotnet --info .NET SDK (reflecting any global.json): Version: 5.0.202 Commit: db7cc87d51
Runtime Environment: OS Name: Mac OS X OS Version: 10.15 OS Platform: Darwin RID: osx.10.15-x64 Base Path: /usr/local/share/dotnet/sdk/5.0.202/
Host (useful for support): Version: 5.0.5 Commit: 2f740adc14
.NET SDKs installed: 5.0.202 [/usr/local/share/dotnet/sdk]
.NET runtimes installed: Microsoft.AspNetCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.AspNetCore.App] Microsoft.NETCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.NETCore.App]
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https://secure-web.cisco.com/1G9XEDCnxN1YTZpmYbtxq6mithjtSrUKzzlUKdp7sPNqOF2juoi7YDowWfrC1UIWvrBLmJJxGMQY8n9fDrkR1LmwMMeVXd7k4qPd3uDCB5eAfLaHJF3ExaG1ykMjX2gDbHXQWwsijoqkCLddbbOv3U5Adsh5PU5Lmkp8JbTrp9VSy0Q5xWWplvncNv3L-j0Ksfw-lWW27X1rJSNtNyiaR3RHGgC0oJ0bmx0G8-olBXWxFopTlfBBhzrGOBQcJdllQHuMSp0A06p4rf-VihzzQog/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1W4JYoQY1EYhmxfnYSmfxXZG9hPZbQxsZdWLKSk2D_7dvuj... https://secure-web.cisco.com/1LSmKKFUaSRpBqvdN0yn79KX75bzxAKJUc_HFu0Y3uw5-POpZ_8opu7YjQjGVMnUIA-1EvvbrxbBtg1yVinl31BNendPrHiwFvD1IRg0hNNHKH191IA7UEFhmt4qCMN0x-ktdd8q5vxsdjcRc5c1u-1UjeDRcEZHkZ0IsMOz4S8ENlefPVjyTYb9sj8Sq5eph25ca4qtsB_gF3SS7NF4eQDdePKmymCcAEyDJezt65Y5r1vHfCDUY413I1TkK1MuZPxzU1mep96u3RQBcf_XHAg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1C8h7HxcFQTdSEeIL8GWfoLtNsTzVtChSMjR6lwymJueZi4... https://secure-web.cisco.com/1Bga0sfCt7q_J4tj0ghWdpdwkA8E3_b3eFMc_2JHyD1Pkq1feK6bI-Ym3bq8vVSRVRgKs64HrQvgLxEBwImuCaEwYCexNhbmDpmqvsxS9sPxtdTg8TbBMdvKao2ewXM6Qt5MNsSc3_zNBl8XyA0eYi6bh3_J2wpdfF-_OgtAHDrnm3QZVEydqLEZskVps60rHDoindqIfoN_mnMc8MVV4OfwYAJnz8zGeDaCgeBo7-D1ulneurMJwjkcr5b6n5ATqLvUwKi5F7i65fwal8ztNhA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1Aiq1Z0x860-LDXTTSO7GwfBSzzWU9mt5WuLpvhlYE1JtAy... https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3RixYDotrwpQoQe1SD5oBkfS-TbVHpaQRNAIAG4GOI9Y923GTU8HsGNZP8Bep11vL_5F4EgdqBbliP2P_M9PFjcTnoUK6eHPCVlbfLnwsYrbaRBLI3HyZ_KbeF3YCSc7aoCuOl4HS54QjLuboHAX3uanjFEZyXFymZ7DMyHN6j_8ANrNyx6djG90bl1S9N-5Tfmm43xE-rBlvFhyBGIS6fLh25QzaYDIKgNflARtA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1i0UQjD1TmQAj6lTN3lL2ntzDbgR_PwAIi-m4Ccnnlckvr1... https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO20VrWZ0eGJ2DItdgkqBvriGiyghm0tWtca_Kfo3IYeuQcUTrEGSxTVYqS-OZI2RVEfnxI8JP4QatZXz2MaLgipbm4c6X-whgbRjaCubKCSTXHJ4QGaluIskA3DOD8239-qEaCphWv5w6qw7Gm-Ba2muPAm9V1udyYNc02k_ptwo1VbahAeds4qlQ-gubY9aG_i7fxtZ5kjACKRRWpDbA8S6Iy01lcYGzNumK3bIlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1X3J5egZEPhONKHaP1452biEIzPLnWAAWeDhCH2JsH54hHj... https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROnyI3SYPV_koPb3DEc1nGgoLTPLZIJizMfjmKf8VeWIZtd3gWldkMJOSOd677YDiWX3UgWGE5yXJY_-99FquKaRnC_UjGPXLMoZAzz13U4R79gp6EEzulMShhVnrpLtZfyzpeYJRB46SmFiN0cmv07E5xmP2LpWVvfN72WrgrM9tETxg0Jwr5Tdgf9YdwkCk1LQbWop03XdmewsbKCUGo1cmD5Jxzge27FE6Gmc5ng/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting werkzeug>=0.11.15 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1ygUOjR1YcWoGlAjxmo4uPCyC-UI5C2BvtV6kXdDOBPaZQM... https://secure-web.cisco.com/1v1TKMfd_P6zYl4sVFufwS7yxOhly__VEN0VpBYzb6bwG2prRecRPkdyr00F-t2RabUK6JiQYoFF64iNwnVK0AABdBXjKXjeEMwkGq156zlnHKd01qkAOXC_ZdOWYTNyaXJx4MU5yxLSSdDxbMeV9gPNN0ccQZMDQRGg51scpJQ9m2OWY1LBwgzYzG34GcUf4AUr3jDknKDuL609eDXBvacVpr9WqVUxgwXD6ZH8GSgBGVUHjV7ZIuLCt2IC0W92ZSOaz6I5BrErVTWHQ7vzUvg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fcc%2F94%2F5f7079a0e00bd6863ef8f1da638721e9da21e5bacee597595b318f71d62e%2FWerkzeug-1.0.1-py2.py3-none-any.whl Collecting markdown>=2.6.8 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/11X3lMwNdlFgFpdfIj3w3v5V8DNv_VYIbEpq68c6TRVZ5o2... https://secure-web.cisco.com/1-RFQTCupXzUz-iRFbxkS-NKtwbx7gnfDMr8q8symcKVSJCrXUwd_5opYJf4UJN6ql9vPLtWdOq_i1zDgfSCUEo0WCAUgJD671jtmMda6rCAVKK20tGULgybsilZu5Sf_khFfAkdixf76FNcS48MqkSJriH2XaA16A_ekkMdO8Zue-j3tTpgWGPqYS8jK0IbgP_uMay4FwFgfyph1rr0PED1yKTtyXzG8Oxg-Y8sa4ArgWCRCclnySKmfLLxH-FdpRRplyPVcH22nx4on4adqBg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F6e%2F33%2F1ae0f71395e618d6140fbbc9587cc3156591f748226075e0f7d6f9176522%2FMarkdown-3.3.4-py3-none-any.whl Collecting h5py (from keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/13-Y0-YBBGf3H8y0Uj42_poAtgOPwa2yeoeNdmww5tnY64t... https://secure-web.cisco.com/131qMp792FRLOMfDTnyQxnXhafBfq6wIOSxbjG3m1Fg_FdFGhK52RjDXV7ZjWXftwpJPiylzWsk_BGg8fhR4bcyM-U2rtn4sficr1zdYMyttrr0LhGabXo94bNQlRm5BWzWmuIpkrzt-J6xMlCqdWtUVBEwg4elmfJiURUf-lcZQIf9AfBWpyL5lKFhmZDWRtLpykkVkFGrfKNEbrVskuiFnYL0AtLFkCHbRJNz1JQU1whng4AjyIe40AC5RALeHO776KePBsGP5RO_tXgoP-Fg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F34%2F8b%2F24796b39111b4a235051003986b1c6d43e8b9699ec5936b642231c101c40%2Fh5py-3.1.0-cp36-cp36m-macosx_10_9_x86_64.whl Collecting mock>=2.0.0 (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1pdrtFk7xo6kuJuOfiFddbdo2WDnb7SuxojXVpdfW1wfvLi... https://secure-web.cisco.com/15zll9spxR9-xVODAIpHpRMEelwnB6CCFSqbDZakaxUxAM_3tW-BnGJ0ZQX9otv-1XbeiDYxLCP2KpwkR5xkU8HdIj02rQFgakZOKZCWCA1WvEzpUPC2IA9wOTQhHcfdVMnVC-TbdBD7vmHXEX5_y7sWv8LdRCYmvBfWtKsnzm9-ghaV8CD6F9gPaTWwUmWSpUW9i3JlBNSpWSnqalGDMKhNFg0kIZiZPSND3Huq4Ye0fOG-ku-6BmjvtT_2s5IVWQyjN5WenPbn-raMxoq3wlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F5c%2F03%2Fb7e605db4a57c0f6fba744b11ef3ddf4ddebcada35022927a2b5fc623fdf%2Fmock-4.0.3-py3-none-any.whl Collecting importlib-metadata; python_version < "3.8" (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/11EYr1rjKsmCRHkF6sbfD8kxDY_FV-Fy41Vq0dawtm-PITt... https://secure-web.cisco.com/1FXv2-9Xqlf6UO2-XDdnx4NHYzNmTe0FDsnAIkrRYlJq3_5BvYaMKG6oBGgWGELXLtD0SkDqoAN06QPlCETT2WgON2nNFxfWBRk6UPuzjBlSwDhC1VzQ36_IUQCH4es1hDAmLJuV7kLvGhonP4DcGCFWuB-xGfFrg5NDamFEW6zDG0vCq-BOJHtn2uVP_KiMBXtRt8jylBov-JqQfDlsKgapZVcMZe3JsadUVNZs36GJqlsgyCAyFZ136Ko7-KJYp3W_CAdsGWJwdqwywnYFhxQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F52%2Fd0%2Fbdb31463f2d9ca111e39b268518e9baa3542ef73ca449b711a7b4da69764%2Fimportlib_metadata-3.10.1-py3-none-any.whl Collecting cached-property; python_version < "3.8" (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1KW3Qspb3AUuaPSWE4cieJ04Irx0wG1oXKlAZXICInIRn8Q... https://secure-web.cisco.com/1uvvHIogRfkxVSdiM8Ew2bQJCSVH5zpq4zRqYs8e9-Shce4jYvPLEwk-6h57FBvpfX3eW9Tp6wb584GNYcnmYsYg3moRoiHdMPvxHGDvsyLtL8qqWyrX0AtVn6ynnZKguvNUcMEiLbovgH4qzAjipahQ-pfQ0rZB1FKqvj2KIhXZJ6KWkhvpTjClapxLQTTeSSiiPYUCU4EHG6yfe9oyzZEtrP9PX8533Wn0F-mhvxmyLJIDrU7T98FU2ij_W4lugOEuE8rl3n5VmAW-lFZevLA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F48%2F19%2Ff2090f7dad41e225c7f2326e4cfe6fff49e57dedb5b53636c9551f86b069%2Fcached_property-1.5.2-py2.py3-none-any.whl Collecting zipp>=0.5 (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1tBiz_WzS4-nkgZ8A2rEHQaWE3vp-wQrbid2_a4kS1fVEfT... https://secure-web.cisco.com/1S-t6Pq9hklSG64kPJ8JbEM6bQAlEI-AfoeKiveh3O7QuPljk4xBmeKFBLIGQtnpYi1Q2vCDvaqHUbiQXPycUQqWGAxdO8uq0ZXU_PAfBmVUYYvVdbHix80xsTsZQ4Vb9q-HQLUk1JbFJAllIGU5nIt7wYq-ngRR8gwGw7kBoOqclSjBvtDJVNsE-1avMSDIr9pO8WoSaj5ITN8-G_q43AvMWXBwkS--tIBYIe46FIpxqJygnxxEWG5MvSlhp1tU2AW31_YLCbARXpbGOyZd4sQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F8c%2F715c54e9e34c0c4820f616a913a7de3337d0cd79074dd1bed4dd840f16ae%2Fzipp-3.4.1-py3-none-any.whl Collecting typing-extensions>=3.6.4; python_version < "3.8" (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1aUPP_uHQCskgFNvuf5gf-vb3HGwC3DpAj57HGs7XcYXEwK... https://secure-web.cisco.com/115oJckN0s7VM7FDbFcbn-TS618Z2BvhMz22XDzlZrFoxtmEHS1sdgy2S0GUwRnyY0ivKAXWmMmrDowMvD4_fHwknWsW2zaoR6gPoMWi4nHISV1DY-3xzJ4KqFKkdycAC-YRBGAGXqxb5VS9T2dp_1KcQG9NILrdgO7oKpKb8VTyON3M7AVCyMPO3sHHUY3bhW_t0cOwv0YmP7eFV1l5mk9ZXI1cbodGu3qLBSm40c6oSk9arPUkb848MkRUMF0MkjjJcOHsGrm7wQ4aax-AdHA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F60%2F7a%2Fe881b5abb54db0e6e671ab088d079c57ce54e8a01a3ca443f561ccadb37e%2Ftyping_extensions-3.7.4.3-py3-none-any.whl Installing collected packages: keras-preprocessing, astor, wheel, absl-py, werkzeug, protobuf, grpcio, zipp, typing-extensions, importlib-metadata, markdown, tensorboard, gast, cached-property, h5py, keras-applications, mock, tensorflow-estimator, termcolor, tensorflow Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Applications/freesurfer/7.1.0/python/lib/python3.6/site-packages/keras_preprocessing' Consider using the `--user` option or check the permissions.
Not sure what the EnvironmentError is? The myenv was set up as: conda create -n myenv python=3.6 conda activate myenv
Many thanks.
AJ
On Fri, Apr 16, 2021 at 11:38 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use CautionMaybe you want to check your .NET core version?
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1qC8cBPi4Ow2orEtTuftt6EDxGSmLfTdtASDzD55oasir1H... https://secure-web.cisco.com/1yA0JP579_nnFgIsajBEG82WAZ8ZXFFAjhKmNhWALkdw3hWQHGEcHyIQn9f2Zja-3VCQLCFm9O0vC7xCZ_M4GHuJonItW4QLqSd4D3b7dVWPWb8b-NWodb-k9cpmqMdEGAH3pZnQ3hXuGkzltwOzrIGPZTkE_T-1ht-5GhHd-1bwYhz42vrq_kA885Iex-1TOugC-ktILkE7eYWn-UWDgTvloa6sK6PzcGTuCKH2N64-fOBxvnMYUo0COaP98cZrVV9ryDBJqEZBKm0-XQigEsA/https%3A%2F%2Fgithub.com%2Fdotnet%2Fcore%2Fissues%2F4005
On Sat, 17 Apr 2021, 09:33 AJ, ajcns1969@gmail.com wrote:
> External Email - Use Caution > > sorry, but I get the same error after > conda create -n myenv python=3.6 > conda activate myenv > > (myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install > tensorflow==1.13.1 > Collecting tensorflow==1.13.1 > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1aqrr1q0T2oNtdQHczg1FWIpcasmji8vuw-U2PUMG2Ekl7f... > https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl > Requirement already satisfied: numpy>=1.13.3 in > /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) > (1.18.4) > Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1fosb7XSMk295uYrBfD2tM-v5jiXGfH3UK_WmmtgeyKELsU... > https://secure-web.cisco.com/1RMFXu4xTNiyrlVHbqnFhCp06zcdACw-b85vgi-wBoMDkIycA4pXi8xb5Wd97atgVnp5x1tGG6PrqPcH-AtQi2iMfbdY1Hw2Sh4Z52sW5U1LhBKxPYiFJmB5wwdVjaU0Rx-TmaoQbeLMVz8tugeVp4e8dC8_kMIw50hrEk3rEpbLBo0TFyMSHe_Jn2n63vW6ywfiywtr0B0rzMLTHwI2e9NvDZRzP8YZtbnnN2N86u-WsnyGSK2flOryf3YPYw5tM4zQ3ADoIs_hoKasrRLCYmQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl > Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1W4JYoQY1EYhmxfnYSmfxXZG9hPZbQxsZdWLKSk2D_7dvuj... > https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qDSltc0yDQeHeUNdpQb6xWEJmNcsc94e747p1zYGWBjD21VPp6A5JyBE472z3_9IsJSimgpwQsjJIr5FajJz0wtLKMvndRW6qIa2Vlr-e4OGId3NHIK-kauEd8DM6nvBGLFM8zKN0ofVgT4Y1PF6YR5ILpi3vobatS3Y5I6gOgTMpRE_M3dSQDQBVszLjLxGYtvREzN4DOmouqfpE3JEbicX7a4kNtNnhdVaSAwXnw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl > Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1hmcoVo5rIloPem7Y_qk6eDLrPA3KSai3jaoLTInbKgi-Xq... > https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl > Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from > tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1C8h7HxcFQTdSEeIL8GWfoLtNsTzVtChSMjR6lwymJueZi4... > https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl > Collecting gast>=0.2.0 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/12gBYiB7Db4K637dBOCIa-w9ifLxC-Q63wAeZXEOJFksGT_... > https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl > Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1fxTbiaaR99OKQvodHmd5TAQR6seGcW1gsxKo9umx45aOnI... > https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl > Requirement already satisfied: six>=1.10.0 in > /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) > (1.14.0) > Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1i0UQjD1TmQAj6lTN3lL2ntzDbgR_PwAIi-m4Ccnnlckvr1... > https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl > Collecting wheel>=0.26 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1NPSz9HUiQprFb9UcCVEwxHGv8KNhqigE0uWGEAT8AVpso8... > https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl > Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1X3J5egZEPhONKHaP1452biEIzPLnWAAWeDhCH2JsH54hHj... > https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl > Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) > Using cached *MailScanner has detected a possible fraud attempt > from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1Aiq1Z0x860-LDXTTSO7GwfBSzzWU9mt5WuLpvhlYE1JtAy... > https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz > dyld: lazy symbol binding failed: Symbol not found: _utimensat > Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 > Expected in: /usr/lib/libSystem.B.dylib > > dyld: Symbol not found: _utimensat > Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 > Expected in: /usr/lib/libSystem.B.dylib > > Abort trap: 6 > > On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote: > >> thank you so much. I just installed conda. >> (base) MacBook-Pro-4:~ AJ$ conda -V >> conda 4.9.2 >> Is myenv /Aplications/freesurfer/7.1.0 >> thank you. >> aj >> >> On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com >> wrote: >> >>> External Email - Use Caution >>> >>> 1. Make sure you have conda installed >>> 2. In your terminal, then >>> >>> conda create -n myenv python=3.6 >>> conda activate myenv >>> >>> 3. Then you should be able to install TF 1.13 >>> >>> On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote: >>> >>>> External Email - Use Caution >>>> >>>> sorry for being non-tech, but how do I exactly do creating a >>>> conda venv with Python 3.6. >>>> many thanks >>>> aj >>>> >>>> On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com >>>> wrote: >>>> >>>>> External Email - Use Caution >>>>> >>>>> Hi AJ, >>>>> >>>>> So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. >>>>> Python >=3.7 only supports TF2. Can you try creating a conda venv with >>>>> Python 3.6 and try again? >>>>> >>>>> On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote: >>>>> >>>>>> External Email - Use Caution >>>>>> >>>>>> Thank you so much for your help. >>>>>> Here's the error: >>>>>> MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 >>>>>> Collecting tensorflow==1.15 >>>>>> Using cached *MailScanner has detected a possible fraud >>>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>>> https://secure-web.cisco.com/17d037-KjJSMtCjCoYOTI9hmPxx_A48GtEzbh5zkylR7Boz... >>>>>> https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl >>>>>> Requirement already satisfied: six>=1.10.0 in >>>>>> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >>>>>> (1.14.0) >>>>>> Collecting keras-applications>=1.0.8 (from tensorflow==1.15) >>>>>> Using cached *MailScanner has detected a possible fraud >>>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>>> https://secure-web.cisco.com/1W4JYoQY1EYhmxfnYSmfxXZG9hPZbQxsZdWLKSk2D_7dvuj... >>>>>> https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl >>>>>> Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) >>>>>> Downloading *MailScanner has detected a possible fraud >>>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>>> https://secure-web.cisco.com/10wPJYtQ23TtRU9ldCJur5tsMY3kMCib5IWi1xZEewIE5wB... >>>>>> https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl >>>>>> (503kB) >>>>>> 100% |████████████████████████████████| 512kB 5.8MB/s >>>>>> Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) >>>>>> Downloading *MailScanner has detected a possible fraud >>>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>>> https://secure-web.cisco.com/1oBxPfKe1XYfwgwV4S7XA823YZZATLsU8qPZkKlU2wt4SMy... >>>>>> https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl >>>>>> (65kB) >>>>>> 100% |████████████████████████████████| 71kB 13.9MB/s >>>>>> Requirement already satisfied: numpy<2.0,>=1.16.0 in >>>>>> /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) >>>>>> (1.18.4) >>>>>> Collecting absl-py>=0.7.0 (from tensorflow==1.15) >>>>>> Using cached *MailScanner has detected a possible fraud >>>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>>> https://secure-web.cisco.com/1fxTbiaaR99OKQvodHmd5TAQR6seGcW1gsxKo9umx45aOnI... >>>>>> https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl >>>>>> Collecting wrapt>=1.11.1 (from tensorflow==1.15) >>>>>> Using cached *MailScanner has detected a possible fraud >>>>>> attempt from "secure-web.cisco.com" claiming to be* >>>>>> https://secure-web.cisco.com/1mnWVWX3406-S7IP86K77Ss5Xj1KJk6P6yhRCmt90T2pjA0... >>>>>> https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz >>>>>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>>>>> Referenced from: >>>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>>> >>>>>> dyld: Symbol not found: _utimensat >>>>>> Referenced from: >>>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>>> >>>>>> Abort trap: 6 >>>>>> >>>>>> >>>>>> >>>>>> On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew < >>>>>> AHOOPES@mgh.harvard.edu> wrote: >>>>>> >>>>>>> Hi AJ, >>>>>>> >>>>>>> >>>>>>> >>>>>>> Freesurfer ships its own python distribution, so it doesn’t >>>>>>> matter what you have installed on your system. Can you let us know the >>>>>>> specific version of macOS you are using and send the full error report from >>>>>>> pip? >>>>>>> >>>>>>> >>>>>>> >>>>>>> Thanks >>>>>>> >>>>>>> Andrew >>>>>>> >>>>>>> >>>>>>> >>>>>>> *From: *freesurfer-bounces@nmr.mgh.harvard.edu < >>>>>>> freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < >>>>>>> ajcns1969@gmail.com> >>>>>>> *Date: *Friday, April 16, 2021 at 11:56 AM >>>>>>> *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu >>>>>>> *Subject: *Re: [Freesurfer] error installing tensorflow >>>>>>> >>>>>>> * External Email - Use Caution * >>>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> I have python both versions of python installed: >>>>>>> >>>>>>> MacBook-Pro-4:~ AJ$ python3 --version >>>>>>> Python 3.9.4 >>>>>>> MacBook-Pro-4:~ AJ$ python --version >>>>>>> Python 2.7.10 >>>>>>> >>>>>>> >>>>>>> >>>>>>> when installing fspython -m pip install tensorflow==1.13.1, I >>>>>>> get the error: >>>>>>> >>>>>>> dyld: Symbol not found: _utimensat >>>>>>> Referenced from: >>>>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>>>> >>>>>>> Abort trap: 6 >>>>>>> >>>>>>> >>>>>>> >>>>>>> Is the issue that freesurfer is looking for python3? I am not >>>>>>> sure how to get past this installation of tensorflow? >>>>>>> >>>>>>> Thank you for your help. >>>>>>> >>>>>>> AJ >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Fri, Apr 16, 2021 at 12:58 AM Vishnu S < >>>>>>> vishnudaboss@gmail.com> wrote: >>>>>>> >>>>>>> * External Email - Use Caution * >>>>>>> >>>>>>> Can you try downgrading to python 3.6 in a conda env? Python >>>>>>> 3.7 support only TF 2.0 and higher. >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote: >>>>>>> >>>>>>> * External Email - Use Caution * >>>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> >>>>>>> >>>>>>> I am having trouble installing: fspython -m pip install >>>>>>> tensorflow==1.13.1 >>>>>>> >>>>>>> Not sure what the issue is. Any help would be greatly >>>>>>> appreciated. >>>>>>> >>>>>>> best >>>>>>> >>>>>>> AJ >>>>>>> >>>>>>> Error message while installing: >>>>>>> >>>>>>> >>>>>>> dyld: lazy symbol binding failed: Symbol not found: _utimensat >>>>>>> Referenced from: >>>>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>>>> >>>>>>> dyld: Symbol not found: _utimensat >>>>>>> Referenced from: >>>>>>> /Applications/freesurfer/7.1.0//python/bin/python3 >>>>>>> >>>>>>> Expected in: /usr/lib/libSystem.B.dylib >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>> *MailScanner has detected a possible fraud attempt from >>>>>>> "secure-web.cisco.com" claiming to be* >>>>>>> https://secure-web.cisco.com/1Un5h-yDjRPV6FJWfgQ96LogdMb8t_KkfyuaSiMr-xqGPMx... >>>>>>> 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/samsegOutput/ is read-only for you. Use an output directory that you have permission to write to.
Best, Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of AJ ajcns1969@gmail.com Date: Monday, April 19, 2021 at 8:53 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error installing tensorflow
External Email - Use Caution Hi Freesurfer, Does anyone know what to do with this error when running run_samseg --input T1.filename FLAIR.filename --pallidum-separate --lesion --lesion-mask-pattern 0 1 --output /samsegOutput/
OSError: [Errno 30] Read-only file system: '/samsegOutput/'
Many thanks. AJ
On Sun, Apr 18, 2021, 21:31 AJ <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote: I greatly appreciate your help, Vishnu.
This is the error I get now.:
(base) MacBook-Pro-4:aseg2620145_2018 AJ$ conda activate myenv
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$ fspython -m pip install tensorflow==1.13.1 --user admin
Requirement already satisfied: tensorflow==1.13.1 in /Users/AJ/.local/lib/python3.6/site-packages (1.13.1)
Requirement already satisfied: admin in /Users/AJ/.local/lib/python3.6/site-packages (0.0.1)
Requirement already satisfied: absl-py>=0.1.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.12.0)
Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0)
Requirement already satisfied: termcolor>=1.1.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.1.0)
Requirement already satisfied: wheel>=0.26 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.36.2)
Requirement already satisfied: gast>=0.2.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.4.0)
Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4)
Requirement already satisfied: tensorflow-estimator<1.14.0rc0,>=1.13.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.13.0)
Requirement already satisfied: protobuf>=3.6.1 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (3.15.8)
Requirement already satisfied: grpcio>=1.8.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.37.0)
Requirement already satisfied: keras-applications>=1.0.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.0.8)
Requirement already satisfied: astor>=0.6.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.8.1)
Requirement already satisfied: keras-preprocessing>=1.0.5 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.1.2)
Requirement already satisfied: tensorboard<1.14.0,>=1.13.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.13.1)
Requirement already satisfied: mock>=2.0.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) (4.0.3)
Requirement already satisfied: h5py in /Users/AJ/.local/lib/python3.6/site-packages (from keras-applications>=1.0.6->tensorflow==1.13.1) (3.1.0)
Requirement already satisfied: markdown>=2.6.8 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.3.4)
Requirement already satisfied: werkzeug>=0.11.15 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (1.0.1)
Requirement already satisfied: cached-property; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) (1.5.2)
Requirement already satisfied: importlib-metadata; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (4.0.0)
Requirement already satisfied: typing-extensions>=3.6.4; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.7.4.3)
Requirement already satisfied: zipp>=0.5 in /Users/AJ/.local/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.4.1)
You are using pip version 18.1, however version 21.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$ run_samseg --input 3DT1_output.nii FLAIR_reg.nii --pallidum-separate --lesion --lesion-mask-pattern 0 1 --output /samsegOutput/
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:526: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:527: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:528: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:529: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:530: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:535: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
Traceback (most recent call last):
File "/Applications/freesurfer/7.1.0//python/scripts/run_samseg", line 61, in <module>
os.makedirs(args.outputDirectory, exist_ok=True)
File "/Applications/freesurfer/7.1.0//python/lib/python3.6/os.py", line 220, in makedirs
mkdir(name, mode)
OSError: [Errno 30] Read-only file system: '/samsegOutput/'
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$
On Sun, Apr 18, 2021 at 9:26 PM Vishnu S <vishnudaboss@gmail.commailto:vishnudaboss@gmail.com> wrote:
External Email - Use Caution No instead of --admin permissions it would be --user
On Mon, 19 Apr 2021, 07:24 AJ, <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote:
External Email - Use Caution Thank you for your response.
Would that script be fspython -m pip install tensorflow==1.13.1 --admin permissions
On Sat, Apr 17, 2021, 20:33 Vishnu S <vishnudaboss@gmail.commailto:vishnudaboss@gmail.com> wrote:
External Email - Use Caution Can you try running the same command with the --user flag (admin permissions)?
On Sun, 18 Apr 2021, 00:40 AJ, <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote:
External Email - Use Caution Thank you for your help. I think I'm getting closer to installing tensor flow. 1-as you suggested: installed .NET
(myenv) MacBook-Pro-4:~ AJ$ dotnet --info .NET SDK (reflecting any global.json): Version: 5.0.202 Commit: db7cc87d51
Runtime Environment: OS Name: Mac OS X OS Version: 10.15 OS Platform: Darwin RID: osx.10.15-x64 Base Path: /usr/local/share/dotnet/sdk/5.0.202/
Host (useful for support): Version: 5.0.5 Commit: 2f740adc14
.NET SDKs installed: 5.0.202 [/usr/local/share/dotnet/sdk]
.NET runtimes installed: Microsoft.AspNetCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.AspNetCore.App] Microsoft.NETCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.NETCore.App]
To install additional .NET runtimes or SDKs: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://aka.ms/dotnet-downloadhttps://secure-web.cisco.com/1OxYkG-3ytzUXBmp6iwhX6GTNcJNN9ebFt06hE_vUaohhHxw1akcr8GYz9dMHjSFShk3tayfQZ7hxie3xKH-wBvyKLXSa9eM-CAr65Rb6wh5-YVoUJXGOXkv4iphdq8gJ-S_GeccsJdQsQQCrKBO8J61KZaaODZYIS8Fdd1apGSdI_ZTKf0q6T3j4fL28ET4qHARQYQEEOybeBDgMpfwDjLgGCGigsLKBNRHQg-HZazd6jsjnIhYf99CVKn7tuO-_Bp48z3tNPP3csglBVECo6A/https%3A%2F%2Faka.ms%2Fdotnet-download
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/f6/7b/5ab19bac13810661ff9e2485811553...https://secure-web.cisco.com/1CcF2y2q_HUgQ439LsQWK2Zie3vsvuCSIbTBcN6hC5UjggKTpfnqciQfitLK94Cw98fB3eTE02Se_4X7d6r9EmPPV7qNBG8aUK5IfJhLgsgtwqzKTDAMS2CCLf1lAPHtv_Eog-Er9gKcR5lxyg_5TEbEuaflWB4bFmLf6DzFSsLTNXImvgbVCBYvOImkdU_mM9szbXcNtnPoAv8vw6aBbB4BEYHazwBK3237PS1k2EgU8rQ6_HniTkyf5Mo4bN467Kp7RseIKlAN95SbyVmtqOw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/79/4c/7c3275a01e12ef9368a892926ab932...https://secure-web.cisco.com/19q916xZq2SAv6hsVsFXQmN4PFDz1V4xO9lrcrnOcAMRMlAsG944eiR9fVN9QiuOswvieotJP-xPUCfbIb2v7s1yIOl5zeg4WD63PdJ7eZXRH86JhMmV29HK4hOBKiN1URbSE8WRgPvRtDUtk5CzAna0UmwMqdZ-ITHd3yrS0MQ9aImDNqyIp-IpLtPUZ2eCUIKbuDJCuZwg3QdYpuN7HIoeq6s4AULrS2oI364b7ZDDBEii6z3ennBy2TFr3de9Sec-UTvdCxrrj6n9oCAoIcg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting astor>=0.6.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/c3/88/97eef84f48fa04fbd6750e62dcceaf...https://secure-web.cisco.com/1GZfov0hn7NAdkr_BPor4qry7T8qjxb6-lgnrP_Zlek817tEFL5I8aHTYnVPpPhwz1iPH5v5euFFPVdhAgDP8t0nty-5xYaYlVVy3eZaAnApeRXXzOxja_8LManl_95FKy3-9_g5M4cDaz86Q4HN172Brd29Rx1zSptbSINonnMywazbMTXnZClepaikxo7_Smchhm_zzLOPTd8lVWvAkwwXO96tqSKi51aV0o0uJkAObAFL6xNH53G4NMXdMbw6KZFDWcD-gBrxKyN7kDwxgBw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fc3%2F88%2F97eef84f48fa04fbd6750e62dcceafba6c63c81b7ac1420856c8dcc0a3f9%2Fastor-0.8.1-py2.py3-none-any.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/65/63/39d04c74222770ed1589c0eaba06c0...https://secure-web.cisco.com/1n1Rm9tZILMvzB6BSjUNGK8m9OZ1sYvuLUAJFQ7JWxJc7JrBZmS9MvCJHNzr11J_SaFeBMxN2xlYJ3TF11qQcs1tIt57nERIhuAT-h0Zr4aGh6yG5_fmDP7jk_or3NdmRN5J2OEpp9j1hzSUeD9Mw1fABRHF8G9RaoPf16v-D-_WKuwmLIHW8ywMAo43aCFDP_7iwXqoSlpJkQp8EeLWTgpuQ5XuSepBQUsjgaxR_5cMlBnccgRVtXAj5LiYcQ3Xvn9_om4l3Ab7XQ5L6Bjun3Q/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/92/c9/ef0fae29182d7a867d203f0eff8296...https://secure-web.cisco.com/1_zAg6j0XNd0Wu7pr0WG0qrX50QCFuLUvOZHbXSrC-M7ZdtSbn-ukmQKHeTL1_9k7WsUzhJRowGKXf9xEtEmm0G4rr7Eq46fQp4nwztAW-_IpyX59QymsvBC8x5e1rk7zej2UcHbM9l0oyH3K1NirbybXagQyM_n-Bsr9hoQOpSgAcL4Qp7tHtUWYyxA5ZquAhW84dV_VmxRwCf_hyhgFExlf18-LUQhF12xrLBARGd7Eb6XMd3PwUkVPqGAeEBnsIXdb3u7wEV7FKRovsKHQAQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/0f/39/bdd75b08a6fba41f098b6cb091b9e8...https://secure-web.cisco.com/1JNkkdPQlC1yKIriRIhp7_J7gPdZnInNt0X_J4HID6QDVmS3SD1rsTHVUS3VhuQ6gL1H0vyp3_uZJgweWQRt1Q0KCuQnERpBFeliNJ-UBBKUmzJ0qlfNs-YnZ1Vl5aowX5PTO5wdZOecSteh2GLUz4hY2gnWrQS7grP6t80R_4bs4TmjWp49r0zT0I-UbniEN17867ODtzwdRHj2J5UK5F13P5-mXbonBFgpRKCKr-pYLt4ouGQhDdzkyPhk30Bvw-hJfc03KqUOsmt3r5d1fQg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/b6/48/583c032b79ae5b3daa02225a675aeb...https://secure-web.cisco.com/1G9XEDCnxN1YTZpmYbtxq6mithjtSrUKzzlUKdp7sPNqOF2juoi7YDowWfrC1UIWvrBLmJJxGMQY8n9fDrkR1LmwMMeVXd7k4qPd3uDCB5eAfLaHJF3ExaG1ykMjX2gDbHXQWwsijoqkCLddbbOv3U5Adsh5PU5Lmkp8JbTrp9VSy0Q5xWWplvncNv3L-j0Ksfw-lWW27X1rJSNtNyiaR3RHGgC0oJ0bmx0G8-olBXWxFopTlfBBhzrGOBQcJdllQHuMSp0A06p4rf-VihzzQog/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/71/e3/19762fdfc62877ae9102edf6342d71...https://secure-web.cisco.com/1LSmKKFUaSRpBqvdN0yn79KX75bzxAKJUc_HFu0Y3uw5-POpZ_8opu7YjQjGVMnUIA-1EvvbrxbBtg1yVinl31BNendPrHiwFvD1IRg0hNNHKH191IA7UEFhmt4qCMN0x-ktdd8q5vxsdjcRc5c1u-1UjeDRcEZHkZ0IsMOz4S8ENlefPVjyTYb9sj8Sq5eph25ca4qtsB_gF3SS7NF4eQDdePKmymCcAEyDJezt65Y5r1vHfCDUY413I1TkK1MuZPxzU1mep96u3RQBcf_XHAg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/bb/48/13f49fc3fa0fdf916aa1419013bb8f...https://secure-web.cisco.com/1Bga0sfCt7q_J4tj0ghWdpdwkA8E3_b3eFMc_2JHyD1Pkq1feK6bI-Ym3bq8vVSRVRgKs64HrQvgLxEBwImuCaEwYCexNhbmDpmqvsxS9sPxtdTg8TbBMdvKao2ewXM6Qt5MNsSc3_zNBl8XyA0eYi6bh3_J2wpdfF-_OgtAHDrnm3QZVEydqLEZskVps60rHDoindqIfoN_mnMc8MVV4OfwYAJnz8zGeDaCgeBo7-D1ulneurMJwjkcr5b6n5ATqLvUwKi5F7i65fwal8ztNhA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/8a/48/a76be51647d0eb9f10e2a4511bf3ff...https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3RixYDotrwpQoQe1SD5oBkfS-TbVHpaQRNAIAG4GOI9Y923GTU8HsGNZP8Bep11vL_5F4EgdqBbliP2P_M9PFjcTnoUK6eHPCVlbfLnwsYrbaRBLI3HyZ_KbeF3YCSc7aoCuOl4HS54QjLuboHAX3uanjFEZyXFymZ7DMyHN6j_8ANrNyx6djG90bl1S9N-5Tfmm43xE-rBlvFhyBGIS6fLh25QzaYDIKgNflARtA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/0c/6f/c5fcad9177ebf85e2adff2ad247de1...https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO20VrWZ0eGJ2DItdgkqBvriGiyghm0tWtca_Kfo3IYeuQcUTrEGSxTVYqS-OZI2RVEfnxI8JP4QatZXz2MaLgipbm4c6X-whgbRjaCubKCSTXHJ4QGaluIskA3DOD8239-qEaCphWv5w6qw7Gm-Ba2muPAm9V1udyYNc02k_ptwo1VbahAeds4qlQ-gubY9aG_i7fxtZ5kjACKRRWpDbA8S6Iy01lcYGzNumK3bIlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/0d/15/4889fb23511601659d68c84c58bfa6...https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROnyI3SYPV_koPb3DEc1nGgoLTPLZIJizMfjmKf8VeWIZtd3gWldkMJOSOd677YDiWX3UgWGE5yXJY_-99FquKaRnC_UjGPXLMoZAzz13U4R79gp6EEzulMShhVnrpLtZfyzpeYJRB46SmFiN0cmv07E5xmP2LpWVvfN72WrgrM9tETxg0Jwr5Tdgf9YdwkCk1LQbWop03XdmewsbKCUGo1cmD5Jxzge27FE6Gmc5ng/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting werkzeug>=0.11.15 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/cc/94/5f7079a0e00bd6863ef8f1da638721...https://secure-web.cisco.com/1v1TKMfd_P6zYl4sVFufwS7yxOhly__VEN0VpBYzb6bwG2prRecRPkdyr00F-t2RabUK6JiQYoFF64iNwnVK0AABdBXjKXjeEMwkGq156zlnHKd01qkAOXC_ZdOWYTNyaXJx4MU5yxLSSdDxbMeV9gPNN0ccQZMDQRGg51scpJQ9m2OWY1LBwgzYzG34GcUf4AUr3jDknKDuL609eDXBvacVpr9WqVUxgwXD6ZH8GSgBGVUHjV7ZIuLCt2IC0W92ZSOaz6I5BrErVTWHQ7vzUvg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fcc%2F94%2F5f7079a0e00bd6863ef8f1da638721e9da21e5bacee597595b318f71d62e%2FWerkzeug-1.0.1-py2.py3-none-any.whl Collecting markdown>=2.6.8 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/6e/33/1ae0f71395e618d6140fbbc9587cc3...https://secure-web.cisco.com/1-RFQTCupXzUz-iRFbxkS-NKtwbx7gnfDMr8q8symcKVSJCrXUwd_5opYJf4UJN6ql9vPLtWdOq_i1zDgfSCUEo0WCAUgJD671jtmMda6rCAVKK20tGULgybsilZu5Sf_khFfAkdixf76FNcS48MqkSJriH2XaA16A_ekkMdO8Zue-j3tTpgWGPqYS8jK0IbgP_uMay4FwFgfyph1rr0PED1yKTtyXzG8Oxg-Y8sa4ArgWCRCclnySKmfLLxH-FdpRRplyPVcH22nx4on4adqBg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F6e%2F33%2F1ae0f71395e618d6140fbbc9587cc3156591f748226075e0f7d6f9176522%2FMarkdown-3.3.4-py3-none-any.whl Collecting h5py (from keras-applications>=1.0.6->tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/34/8b/24796b39111b4a235051003986b1c6...https://secure-web.cisco.com/131qMp792FRLOMfDTnyQxnXhafBfq6wIOSxbjG3m1Fg_FdFGhK52RjDXV7ZjWXftwpJPiylzWsk_BGg8fhR4bcyM-U2rtn4sficr1zdYMyttrr0LhGabXo94bNQlRm5BWzWmuIpkrzt-J6xMlCqdWtUVBEwg4elmfJiURUf-lcZQIf9AfBWpyL5lKFhmZDWRtLpykkVkFGrfKNEbrVskuiFnYL0AtLFkCHbRJNz1JQU1whng4AjyIe40AC5RALeHO776KePBsGP5RO_tXgoP-Fg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F34%2F8b%2F24796b39111b4a235051003986b1c6d43e8b9699ec5936b642231c101c40%2Fh5py-3.1.0-cp36-cp36m-macosx_10_9_x86_64.whl Collecting mock>=2.0.0 (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/5c/03/b7e605db4a57c0f6fba744b11ef3dd...https://secure-web.cisco.com/15zll9spxR9-xVODAIpHpRMEelwnB6CCFSqbDZakaxUxAM_3tW-BnGJ0ZQX9otv-1XbeiDYxLCP2KpwkR5xkU8HdIj02rQFgakZOKZCWCA1WvEzpUPC2IA9wOTQhHcfdVMnVC-TbdBD7vmHXEX5_y7sWv8LdRCYmvBfWtKsnzm9-ghaV8CD6F9gPaTWwUmWSpUW9i3JlBNSpWSnqalGDMKhNFg0kIZiZPSND3Huq4Ye0fOG-ku-6BmjvtT_2s5IVWQyjN5WenPbn-raMxoq3wlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F5c%2F03%2Fb7e605db4a57c0f6fba744b11ef3ddf4ddebcada35022927a2b5fc623fdf%2Fmock-4.0.3-py3-none-any.whl Collecting importlib-metadata; python_version < "3.8" (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/52/d0/bdb31463f2d9ca111e39b268518e9b...https://secure-web.cisco.com/1FXv2-9Xqlf6UO2-XDdnx4NHYzNmTe0FDsnAIkrRYlJq3_5BvYaMKG6oBGgWGELXLtD0SkDqoAN06QPlCETT2WgON2nNFxfWBRk6UPuzjBlSwDhC1VzQ36_IUQCH4es1hDAmLJuV7kLvGhonP4DcGCFWuB-xGfFrg5NDamFEW6zDG0vCq-BOJHtn2uVP_KiMBXtRt8jylBov-JqQfDlsKgapZVcMZe3JsadUVNZs36GJqlsgyCAyFZ136Ko7-KJYp3W_CAdsGWJwdqwywnYFhxQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F52%2Fd0%2Fbdb31463f2d9ca111e39b268518e9baa3542ef73ca449b711a7b4da69764%2Fimportlib_metadata-3.10.1-py3-none-any.whl Collecting cached-property; python_version < "3.8" (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/48/19/f2090f7dad41e225c7f2326e4cfe6f...https://secure-web.cisco.com/1uvvHIogRfkxVSdiM8Ew2bQJCSVH5zpq4zRqYs8e9-Shce4jYvPLEwk-6h57FBvpfX3eW9Tp6wb584GNYcnmYsYg3moRoiHdMPvxHGDvsyLtL8qqWyrX0AtVn6ynnZKguvNUcMEiLbovgH4qzAjipahQ-pfQ0rZB1FKqvj2KIhXZJ6KWkhvpTjClapxLQTTeSSiiPYUCU4EHG6yfe9oyzZEtrP9PX8533Wn0F-mhvxmyLJIDrU7T98FU2ij_W4lugOEuE8rl3n5VmAW-lFZevLA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F48%2F19%2Ff2090f7dad41e225c7f2326e4cfe6fff49e57dedb5b53636c9551f86b069%2Fcached_property-1.5.2-py2.py3-none-any.whl Collecting zipp>=0.5 (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/0f/8c/715c54e9e34c0c4820f616a913a7de...https://secure-web.cisco.com/1S-t6Pq9hklSG64kPJ8JbEM6bQAlEI-AfoeKiveh3O7QuPljk4xBmeKFBLIGQtnpYi1Q2vCDvaqHUbiQXPycUQqWGAxdO8uq0ZXU_PAfBmVUYYvVdbHix80xsTsZQ4Vb9q-HQLUk1JbFJAllIGU5nIt7wYq-ngRR8gwGw7kBoOqclSjBvtDJVNsE-1avMSDIr9pO8WoSaj5ITN8-G_q43AvMWXBwkS--tIBYIe46FIpxqJygnxxEWG5MvSlhp1tU2AW31_YLCbARXpbGOyZd4sQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F8c%2F715c54e9e34c0c4820f616a913a7de3337d0cd79074dd1bed4dd840f16ae%2Fzipp-3.4.1-py3-none-any.whl Collecting typing-extensions>=3.6.4; python_version < "3.8" (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/60/7a/e881b5abb54db0e6e671ab088d079c...https://secure-web.cisco.com/115oJckN0s7VM7FDbFcbn-TS618Z2BvhMz22XDzlZrFoxtmEHS1sdgy2S0GUwRnyY0ivKAXWmMmrDowMvD4_fHwknWsW2zaoR6gPoMWi4nHISV1DY-3xzJ4KqFKkdycAC-YRBGAGXqxb5VS9T2dp_1KcQG9NILrdgO7oKpKb8VTyON3M7AVCyMPO3sHHUY3bhW_t0cOwv0YmP7eFV1l5mk9ZXI1cbodGu3qLBSm40c6oSk9arPUkb848MkRUMF0MkjjJcOHsGrm7wQ4aax-AdHA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F60%2F7a%2Fe881b5abb54db0e6e671ab088d079c57ce54e8a01a3ca443f561ccadb37e%2Ftyping_extensions-3.7.4.3-py3-none-any.whl Installing collected packages: keras-preprocessing, astor, wheel, absl-py, werkzeug, protobuf, grpcio, zipp, typing-extensions, importlib-metadata, markdown, tensorboard, gast, cached-property, h5py, keras-applications, mock, tensorflow-estimator, termcolor, tensorflow Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Applications/freesurfer/7.1.0/python/lib/python3.6/site-packages/keras_preprocessing' Consider using the `--user` option or check the permissions.
Not sure what the EnvironmentError is? The myenv was set up as: conda create -n myenv python=3.6 conda activate myenv
Many thanks.
AJ
On Fri, Apr 16, 2021 at 11:38 PM Vishnu S <vishnudaboss@gmail.commailto:vishnudaboss@gmail.com> wrote:
External Email - Use Caution Maybe you want to check your .NET core version?
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://github.com/dotnet/core/issues/4005https://secure-web.cisco.com/1yA0JP579_nnFgIsajBEG82WAZ8ZXFFAjhKmNhWALkdw3hWQHGEcHyIQn9f2Zja-3VCQLCFm9O0vC7xCZ_M4GHuJonItW4QLqSd4D3b7dVWPWb8b-NWodb-k9cpmqMdEGAH3pZnQ3hXuGkzltwOzrIGPZTkE_T-1ht-5GhHd-1bwYhz42vrq_kA885Iex-1TOugC-ktILkE7eYWn-UWDgTvloa6sK6PzcGTuCKH2N64-fOBxvnMYUo0COaP98cZrVV9ryDBJqEZBKm0-XQigEsA/https%3A%2F%2Fgithub.com%2Fdotnet%2Fcore%2Fissues%2F4005
On Sat, 17 Apr 2021, 09:33 AJ, <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote:
External Email - Use Caution sorry, but I get the same error after conda create -n myenv python=3.6 conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/f6/7b/5ab19bac13810661ff9e2485811553...https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/79/4c/7c3275a01e12ef9368a892926ab932...https://secure-web.cisco.com/1RMFXu4xTNiyrlVHbqnFhCp06zcdACw-b85vgi-wBoMDkIycA4pXi8xb5Wd97atgVnp5x1tGG6PrqPcH-AtQi2iMfbdY1Hw2Sh4Z52sW5U1LhBKxPYiFJmB5wwdVjaU0Rx-TmaoQbeLMVz8tugeVp4e8dC8_kMIw50hrEk3rEpbLBo0TFyMSHe_Jn2n63vW6ywfiywtr0B0rzMLTHwI2e9NvDZRzP8YZtbnnN2N86u-WsnyGSK2flOryf3YPYw5tM4zQ3ADoIs_hoKasrRLCYmQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/71/e3/19762fdfc62877ae9102edf6342d71...https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qDSltc0yDQeHeUNdpQb6xWEJmNcsc94e747p1zYGWBjD21VPp6A5JyBE472z3_9IsJSimgpwQsjJIr5FajJz0wtLKMvndRW6qIa2Vlr-e4OGId3NHIK-kauEd8DM6nvBGLFM8zKN0ofVgT4Y1PF6YR5ILpi3vobatS3Y5I6gOgTMpRE_M3dSQDQBVszLjLxGYtvREzN4DOmouqfpE3JEbicX7a4kNtNnhdVaSAwXnw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/0f/39/bdd75b08a6fba41f098b6cb091b9e8...https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/bb/48/13f49fc3fa0fdf916aa1419013bb8f...https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/b6/48/583c032b79ae5b3daa02225a675aeb...https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/92/c9/ef0fae29182d7a867d203f0eff8296...https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/0c/6f/c5fcad9177ebf85e2adff2ad247de1...https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/65/63/39d04c74222770ed1589c0eaba06c0...https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/0d/15/4889fb23511601659d68c84c58bfa6...https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/8a/48/a76be51647d0eb9f10e2a4511bf3ff...https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote: thank you so much. I just installed conda. (base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2 Is myenv /Aplications/freesurfer/7.1.0 thank you. aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S <vishnudaboss@gmail.commailto:vishnudaboss@gmail.com> wrote:
External Email - Use Caution 1. Make sure you have conda installed 2. In your terminal, then
conda create -n myenv python=3.6 conda activate myenv
3. Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote:
External Email - Use Caution sorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6. many thanks aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S <vishnudaboss@gmail.commailto:vishnudaboss@gmail.com> wrote:
External Email - Use Caution Hi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python >=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6 and try again?
On Sat, 17 Apr 2021, 08:23 AJ, <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote:
External Email - Use Caution Thank you so much for your help. Here's the error: MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/fe/01/997a5d608162cf5371dae49e8cb68b...https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/71/e3/19762fdfc62877ae9102edf6342d71...https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/de/62/2ee9cd74c9fa2fa450877847ba560b...https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl (503kB) 100% |????????????????????????????????| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/bc/19/404708a7e54ad2798907210462fd95...https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl (65kB) 100% |????????????????????????????????| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/92/c9/ef0fae29182d7a867d203f0eff8296...https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://files.pythonhosted.org/packages/82/f7/e43cefbe88c5fd371f4cf0cf5eb3fe...https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew <AHOOPES@mgh.harvard.edumailto:AHOOPES@mgh.harvard.edu> wrote: Hi AJ,
Freesurfer ships its own python distribution, so it doesn't matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ <ajcns1969@gmail.commailto:ajcns1969@gmail.com> Date: Friday, April 16, 2021 at 11:56 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] error installing tensorflow
External Email - Use Caution Hi, I have python both versions of python installed: MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error: dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow? Thank you for your help. AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S <vishnudaboss@gmail.commailto:vishnudaboss@gmail.com> wrote:
External Email - Use Caution Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, <ajcns1969@gmail.commailto:ajcns1969@gmail.com> wrote:
External Email - Use Caution Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1 Not sure what the issue is. Any help would be greatly appreciated. best AJ Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
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External Email - Use Caution
Thanks so much Andrew and Vishnu for this. Yes, that was the problem, directory permission. Many thanks for all your help. My best AJ
On Wed, Apr 21, 2021, 11:36 Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
/samsegOutput/ is read-only for you. Use an output directory that you have permission to write to.
Best,
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < ajcns1969@gmail.com> *Date: *Monday, April 19, 2021 at 8:53 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] error installing tensorflow
External Email - Use Caution *Hi Freesurfer,
Does anyone know what to do with this error when running run_samseg --input T1.filename FLAIR.filename --pallidum-separate --lesion --lesion-mask-pattern 0 1 --output /samsegOutput/
OSError: [Errno 30] Read-only file system: '/samsegOutput/'
Many thanks.
AJ
On Sun, Apr 18, 2021, 21:31 AJ ajcns1969@gmail.com wrote:
I greatly appreciate your help, Vishnu.
This is the error I get now.:
(base) MacBook-Pro-4:aseg2620145_2018 AJ$ conda activate myenv
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$ fspython -m pip install tensorflow==1.13.1 --user admin
Requirement already satisfied: tensorflow==1.13.1 in /Users/AJ/.local/lib/python3.6/site-packages (1.13.1)
Requirement already satisfied: admin in /Users/AJ/.local/lib/python3.6/site-packages (0.0.1)
Requirement already satisfied: absl-py>=0.1.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.12.0)
Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0)
Requirement already satisfied: termcolor>=1.1.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.1.0)
Requirement already satisfied: wheel>=0.26 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.36.2)
Requirement already satisfied: gast>=0.2.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.4.0)
Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4)
Requirement already satisfied: tensorflow-estimator<1.14.0rc0,>=1.13.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.13.0)
Requirement already satisfied: protobuf>=3.6.1 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (3.15.8)
Requirement already satisfied: grpcio>=1.8.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.37.0)
Requirement already satisfied: keras-applications>=1.0.6 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.0.8)
Requirement already satisfied: astor>=0.6.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (0.8.1)
Requirement already satisfied: keras-preprocessing>=1.0.5 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.1.2)
Requirement already satisfied: tensorboard<1.14.0,>=1.13.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow==1.13.1) (1.13.1)
Requirement already satisfied: mock>=2.0.0 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) (4.0.3)
Requirement already satisfied: h5py in /Users/AJ/.local/lib/python3.6/site-packages (from keras-applications>=1.0.6->tensorflow==1.13.1) (3.1.0)
Requirement already satisfied: markdown>=2.6.8 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.3.4)
Requirement already satisfied: werkzeug>=0.11.15 in /Users/AJ/.local/lib/python3.6/site-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (1.0.1)
Requirement already satisfied: cached-property; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) (1.5.2)
Requirement already satisfied: importlib-metadata; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (4.0.0)
Requirement already satisfied: typing-extensions>=3.6.4; python_version < "3.8" in /Users/AJ/.local/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.7.4.3)
Requirement already satisfied: zipp>=0.5 in /Users/AJ/.local/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) (3.4.1)
You are using pip version 18.1, however version 21.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$ run_samseg --input 3DT1_output.nii FLAIR_reg.nii --pallidum-separate --lesion --lesion-mask-pattern 0 1 --output /samsegOutput/
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:526: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:527: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:528: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:529: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:530: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
/Users/AJ/.local/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:535: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
Traceback (most recent call last):
File "/Applications/freesurfer/7.1.0//python/scripts/run_samseg", line 61, in <module>
os.makedirs(args.outputDirectory, exist_ok=True)File "/Applications/freesurfer/7.1.0//python/lib/python3.6/os.py", line 220, in makedirs
mkdir(name, mode)OSError: [Errno 30] Read-only file system: '/samsegOutput/'
(myenv) MacBook-Pro-4:aseg2620145_2018 AJ$
On Sun, Apr 18, 2021 at 9:26 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *No instead of --admin permissions it would be --user
On Mon, 19 Apr 2021, 07:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Thank you for your response.
Would that script be fspython -m pip install tensorflow==1.13.1 --admin permissions
On Sat, Apr 17, 2021, 20:33 Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Can you try running the same command with the --user flag (admin permissions)?
On Sun, 18 Apr 2021, 00:40 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Thank you for your help. I think I'm getting closer to installing tensor flow.
1-as you suggested: installed .NET
(myenv) MacBook-Pro-4:~ AJ$ dotnet --info .NET SDK (reflecting any global.json): Version: 5.0.202 Commit: db7cc87d51
Runtime Environment: OS Name: Mac OS X OS Version: 10.15 OS Platform: Darwin RID: osx.10.15-x64 Base Path: /usr/local/share/dotnet/sdk/5.0.202/
Host (useful for support): Version: 5.0.5 Commit: 2f740adc14
.NET SDKs installed: 5.0.202 [/usr/local/share/dotnet/sdk]
.NET runtimes installed: Microsoft.AspNetCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.AspNetCore.App] Microsoft.NETCore.App 5.0.5 [/usr/local/share/dotnet/shared/Microsoft.NETCore.App]
To install additional .NET runtimes or SDKs: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1q6w7EqwDZjPb6tRL7Q_EB2g0WNlyLSPwwKYbLvcwTiCXsO... https://secure-web.cisco.com/1OxYkG-3ytzUXBmp6iwhX6GTNcJNN9ebFt06hE_vUaohhHxw1akcr8GYz9dMHjSFShk3tayfQZ7hxie3xKH-wBvyKLXSa9eM-CAr65Rb6wh5-YVoUJXGOXkv4iphdq8gJ-S_GeccsJdQsQQCrKBO8J61KZaaODZYIS8Fdd1apGSdI_ZTKf0q6T3j4fL28ET4qHARQYQEEOybeBDgMpfwDjLgGCGigsLKBNRHQg-HZazd6jsjnIhYf99CVKn7tuO-_Bp48z3tNPP3csglBVECo6A/https%3A%2F%2Faka.ms%2Fdotnet-download
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1NeLHSTe7F1PugVSatKowV30RWryvc8dvEYjyt7LUNr9T0l... https://secure-web.cisco.com/1CcF2y2q_HUgQ439LsQWK2Zie3vsvuCSIbTBcN6hC5UjggKTpfnqciQfitLK94Cw98fB3eTE02Se_4X7d6r9EmPPV7qNBG8aUK5IfJhLgsgtwqzKTDAMS2CCLf1lAPHtv_Eog-Er9gKcR5lxyg_5TEbEuaflWB4bFmLf6DzFSsLTNXImvgbVCBYvOImkdU_mM9szbXcNtnPoAv8vw6aBbB4BEYHazwBK3237PS1k2EgU8rQ6_HniTkyf5Mo4bN467Kp7RseIKlAN95SbyVmtqOw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* 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https://secure-web.cisco.com/1K756GULbDfgR0F00taLcb4hj9T7EAthMR1LOsysWb8z1C3RixYDotrwpQoQe1SD5oBkfS-TbVHpaQRNAIAG4GOI9Y923GTU8HsGNZP8Bep11vL_5F4EgdqBbliP2P_M9PFjcTnoUK6eHPCVlbfLnwsYrbaRBLI3HyZ_KbeF3YCSc7aoCuOl4HS54QjLuboHAX3uanjFEZyXFymZ7DMyHN6j_8ANrNyx6djG90bl1S9N-5Tfmm43xE-rBlvFhyBGIS6fLh25QzaYDIKgNflARtA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zlfCvWNyjTlmolvBLGGoscFNLu9RahMjuhJfx3nng5itUp... https://secure-web.cisco.com/1YVTJf1rxjJSdC0Ukoie23wrVhOi_v95crFHkMK-QtdfEO20VrWZ0eGJ2DItdgkqBvriGiyghm0tWtca_Kfo3IYeuQcUTrEGSxTVYqS-OZI2RVEfnxI8JP4QatZXz2MaLgipbm4c6X-whgbRjaCubKCSTXHJ4QGaluIskA3DOD8239-qEaCphWv5w6qw7Gm-Ba2muPAm9V1udyYNc02k_ptwo1VbahAeds4qlQ-gubY9aG_i7fxtZ5kjACKRRWpDbA8S6Iy01lcYGzNumK3bIlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/10A6_KYZCUDa-u0OaGkcVuR0t0c23p9lMTb7l5WWdJas8Kb... https://secure-web.cisco.com/1AeWCiq5XqiuH0gmYvKE9yN57oCU6LVbM_kqGmNl7mLFROnyI3SYPV_koPb3DEc1nGgoLTPLZIJizMfjmKf8VeWIZtd3gWldkMJOSOd677YDiWX3UgWGE5yXJY_-99FquKaRnC_UjGPXLMoZAzz13U4R79gp6EEzulMShhVnrpLtZfyzpeYJRB46SmFiN0cmv07E5xmP2LpWVvfN72WrgrM9tETxg0Jwr5Tdgf9YdwkCk1LQbWop03XdmewsbKCUGo1cmD5Jxzge27FE6Gmc5ng/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting werkzeug>=0.11.15 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1v5y1WzVfHV6QcKB6SHwZWEFEpH0HxLS5Tz-QIn_tRFM5Ub... https://secure-web.cisco.com/1v1TKMfd_P6zYl4sVFufwS7yxOhly__VEN0VpBYzb6bwG2prRecRPkdyr00F-t2RabUK6JiQYoFF64iNwnVK0AABdBXjKXjeEMwkGq156zlnHKd01qkAOXC_ZdOWYTNyaXJx4MU5yxLSSdDxbMeV9gPNN0ccQZMDQRGg51scpJQ9m2OWY1LBwgzYzG34GcUf4AUr3jDknKDuL609eDXBvacVpr9WqVUxgwXD6ZH8GSgBGVUHjV7ZIuLCt2IC0W92ZSOaz6I5BrErVTWHQ7vzUvg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fcc%2F94%2F5f7079a0e00bd6863ef8f1da638721e9da21e5bacee597595b318f71d62e%2FWerkzeug-1.0.1-py2.py3-none-any.whl Collecting markdown>=2.6.8 (from tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1WuzUwr3rkGfGM7f_DcYIN1gO_OYPEZ7kI8raGcoKDuyM0z... https://secure-web.cisco.com/1-RFQTCupXzUz-iRFbxkS-NKtwbx7gnfDMr8q8symcKVSJCrXUwd_5opYJf4UJN6ql9vPLtWdOq_i1zDgfSCUEo0WCAUgJD671jtmMda6rCAVKK20tGULgybsilZu5Sf_khFfAkdixf76FNcS48MqkSJriH2XaA16A_ekkMdO8Zue-j3tTpgWGPqYS8jK0IbgP_uMay4FwFgfyph1rr0PED1yKTtyXzG8Oxg-Y8sa4ArgWCRCclnySKmfLLxH-FdpRRplyPVcH22nx4on4adqBg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F6e%2F33%2F1ae0f71395e618d6140fbbc9587cc3156591f748226075e0f7d6f9176522%2FMarkdown-3.3.4-py3-none-any.whl Collecting h5py (from keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1d1YTd3I0gotTMvRpal3FLCMuyBLEwVTfhIgxHo72UTms7z... https://secure-web.cisco.com/131qMp792FRLOMfDTnyQxnXhafBfq6wIOSxbjG3m1Fg_FdFGhK52RjDXV7ZjWXftwpJPiylzWsk_BGg8fhR4bcyM-U2rtn4sficr1zdYMyttrr0LhGabXo94bNQlRm5BWzWmuIpkrzt-J6xMlCqdWtUVBEwg4elmfJiURUf-lcZQIf9AfBWpyL5lKFhmZDWRtLpykkVkFGrfKNEbrVskuiFnYL0AtLFkCHbRJNz1JQU1whng4AjyIe40AC5RALeHO776KePBsGP5RO_tXgoP-Fg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F34%2F8b%2F24796b39111b4a235051003986b1c6d43e8b9699ec5936b642231c101c40%2Fh5py-3.1.0-cp36-cp36m-macosx_10_9_x86_64.whl Collecting mock>=2.0.0 (from tensorflow-estimator<1.14.0rc0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1iUlDU3NqHdE2AvsjFQ4oJLWF5QY-9UlliXonVwoiVRc_LX... https://secure-web.cisco.com/15zll9spxR9-xVODAIpHpRMEelwnB6CCFSqbDZakaxUxAM_3tW-BnGJ0ZQX9otv-1XbeiDYxLCP2KpwkR5xkU8HdIj02rQFgakZOKZCWCA1WvEzpUPC2IA9wOTQhHcfdVMnVC-TbdBD7vmHXEX5_y7sWv8LdRCYmvBfWtKsnzm9-ghaV8CD6F9gPaTWwUmWSpUW9i3JlBNSpWSnqalGDMKhNFg0kIZiZPSND3Huq4Ye0fOG-ku-6BmjvtT_2s5IVWQyjN5WenPbn-raMxoq3wlw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F5c%2F03%2Fb7e605db4a57c0f6fba744b11ef3ddf4ddebcada35022927a2b5fc623fdf%2Fmock-4.0.3-py3-none-any.whl Collecting importlib-metadata; python_version < "3.8" (from markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1n-mtJAytEhjQi6bWXMl9-KMkaRhqfffhkgip0zCkP42jaa... https://secure-web.cisco.com/1FXv2-9Xqlf6UO2-XDdnx4NHYzNmTe0FDsnAIkrRYlJq3_5BvYaMKG6oBGgWGELXLtD0SkDqoAN06QPlCETT2WgON2nNFxfWBRk6UPuzjBlSwDhC1VzQ36_IUQCH4es1hDAmLJuV7kLvGhonP4DcGCFWuB-xGfFrg5NDamFEW6zDG0vCq-BOJHtn2uVP_KiMBXtRt8jylBov-JqQfDlsKgapZVcMZe3JsadUVNZs36GJqlsgyCAyFZ136Ko7-KJYp3W_CAdsGWJwdqwywnYFhxQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F52%2Fd0%2Fbdb31463f2d9ca111e39b268518e9baa3542ef73ca449b711a7b4da69764%2Fimportlib_metadata-3.10.1-py3-none-any.whl Collecting cached-property; python_version < "3.8" (from h5py->keras-applications>=1.0.6->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1PegozJoDsZp4GE2QSFASmpZ0KqKyvpwQW818jbU47hHCgX... https://secure-web.cisco.com/1uvvHIogRfkxVSdiM8Ew2bQJCSVH5zpq4zRqYs8e9-Shce4jYvPLEwk-6h57FBvpfX3eW9Tp6wb584GNYcnmYsYg3moRoiHdMPvxHGDvsyLtL8qqWyrX0AtVn6ynnZKguvNUcMEiLbovgH4qzAjipahQ-pfQ0rZB1FKqvj2KIhXZJ6KWkhvpTjClapxLQTTeSSiiPYUCU4EHG6yfe9oyzZEtrP9PX8533Wn0F-mhvxmyLJIDrU7T98FU2ij_W4lugOEuE8rl3n5VmAW-lFZevLA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F48%2F19%2Ff2090f7dad41e225c7f2326e4cfe6fff49e57dedb5b53636c9551f86b069%2Fcached_property-1.5.2-py2.py3-none-any.whl Collecting zipp>=0.5 (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1a8OGTIdzGjpZEq-dAOUCXhNSZVoqqKO8fwrqv3WGNIXZCw... https://secure-web.cisco.com/1S-t6Pq9hklSG64kPJ8JbEM6bQAlEI-AfoeKiveh3O7QuPljk4xBmeKFBLIGQtnpYi1Q2vCDvaqHUbiQXPycUQqWGAxdO8uq0ZXU_PAfBmVUYYvVdbHix80xsTsZQ4Vb9q-HQLUk1JbFJAllIGU5nIt7wYq-ngRR8gwGw7kBoOqclSjBvtDJVNsE-1avMSDIr9pO8WoSaj5ITN8-G_q43AvMWXBwkS--tIBYIe46FIpxqJygnxxEWG5MvSlhp1tU2AW31_YLCbARXpbGOyZd4sQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F8c%2F715c54e9e34c0c4820f616a913a7de3337d0cd79074dd1bed4dd840f16ae%2Fzipp-3.4.1-py3-none-any.whl Collecting typing-extensions>=3.6.4; python_version < "3.8" (from importlib-metadata; python_version < "3.8"->markdown>=2.6.8->tensorboard<1.14.0,>=1.13.0->tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1AtwLD7onjOFpY3xOjhHTg3bEDn70KWgFzaypmHkCCnVXra... https://secure-web.cisco.com/115oJckN0s7VM7FDbFcbn-TS618Z2BvhMz22XDzlZrFoxtmEHS1sdgy2S0GUwRnyY0ivKAXWmMmrDowMvD4_fHwknWsW2zaoR6gPoMWi4nHISV1DY-3xzJ4KqFKkdycAC-YRBGAGXqxb5VS9T2dp_1KcQG9NILrdgO7oKpKb8VTyON3M7AVCyMPO3sHHUY3bhW_t0cOwv0YmP7eFV1l5mk9ZXI1cbodGu3qLBSm40c6oSk9arPUkb848MkRUMF0MkjjJcOHsGrm7wQ4aax-AdHA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F60%2F7a%2Fe881b5abb54db0e6e671ab088d079c57ce54e8a01a3ca443f561ccadb37e%2Ftyping_extensions-3.7.4.3-py3-none-any.whl Installing collected packages: keras-preprocessing, astor, wheel, absl-py, werkzeug, protobuf, grpcio, zipp, typing-extensions, importlib-metadata, markdown, tensorboard, gast, cached-property, h5py, keras-applications, mock, tensorflow-estimator, termcolor, tensorflow Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Applications/freesurfer/7.1.0/python/lib/python3.6/site-packages/keras_preprocessing' Consider using the `--user` option or check the permissions.
Not sure what the EnvironmentError is? The myenv was set up as:
conda create -n myenv python=3.6
conda activate myenv
Many thanks.
AJ
On Fri, Apr 16, 2021 at 11:38 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Maybe you want to check your .NET core version?
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1HYyuPKJutIbOSIxdL9efTlkF6at725gF2adOlcjafsz3Rv... https://secure-web.cisco.com/1yA0JP579_nnFgIsajBEG82WAZ8ZXFFAjhKmNhWALkdw3hWQHGEcHyIQn9f2Zja-3VCQLCFm9O0vC7xCZ_M4GHuJonItW4QLqSd4D3b7dVWPWb8b-NWodb-k9cpmqMdEGAH3pZnQ3hXuGkzltwOzrIGPZTkE_T-1ht-5GhHd-1bwYhz42vrq_kA885Iex-1TOugC-ktILkE7eYWn-UWDgTvloa6sK6PzcGTuCKH2N64-fOBxvnMYUo0COaP98cZrVV9ryDBJqEZBKm0-XQigEsA/https%3A%2F%2Fgithub.com%2Fdotnet%2Fcore%2Fissues%2F4005
On Sat, 17 Apr 2021, 09:33 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *sorry, but I get the same error after
conda create -n myenv python=3.6
conda activate myenv
(myenv) MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.13.1 Collecting tensorflow==1.13.1 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1NeLHSTe7F1PugVSatKowV30RWryvc8dvEYjyt7LUNr9T0l... https://secure-web.cisco.com/1C5BUhTq5pnEX5z8UIP5qxXAPEwas1cAOBy4qpE4PlzpmVsAmga6sqAnBwspHDx5J-SE0_xc8QOQ-uZSeuGSYoRau4TkOHluhBWVTocfJOCXY75iUBxbcO9mu2Jbmp59C78Ec2dEeb9p2QukXaJlbbW3Ks_itTDaZ6944Av991ZgHaNaUB-zCeaxVO-gTN-V5Gx4G2oKuMLk5h4dqrqNrk-Lvz-k5r7uFcXXdWVYL0dDfCaWixyOJPmAOhc8U0u7fkIlolTEJj7PD8wjdzP2DIQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ff6%2F7b%2F5ab19bac13810661ff9e2485811553f1dea9a5d611ce846345aed4766bbe%2Ftensorflow-1.13.1-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: numpy>=1.13.3 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.18.4) Collecting keras-preprocessing>=1.0.5 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1wYD_od4zNR2uNULN_v7xjjhOdFcLY4ehddqgdbnJMJziPX... https://secure-web.cisco.com/1RMFXu4xTNiyrlVHbqnFhCp06zcdACw-b85vgi-wBoMDkIycA4pXi8xb5Wd97atgVnp5x1tGG6PrqPcH-AtQi2iMfbdY1Hw2Sh4Z52sW5U1LhBKxPYiFJmB5wwdVjaU0Rx-TmaoQbeLMVz8tugeVp4e8dC8_kMIw50hrEk3rEpbLBo0TFyMSHe_Jn2n63vW6ywfiywtr0B0rzMLTHwI2e9NvDZRzP8YZtbnnN2N86u-WsnyGSK2flOryf3YPYw5tM4zQ3ADoIs_hoKasrRLCYmQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F79%2F4c%2F7c3275a01e12ef9368a892926ab932b33bb13d55794881e3573482b378a7%2FKeras_Preprocessing-1.1.2-py2.py3-none-any.whl Collecting keras-applications>=1.0.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1BIkL9XoPzcOspdhU-dcDw-FbkGhrxXhoW4DGU4NgAcseS3... https://secure-web.cisco.com/1kRRYu1Ow6YxW0Khbw-X-FXQesqZx5RGeDuDDhnxlJZW2qDSltc0yDQeHeUNdpQb6xWEJmNcsc94e747p1zYGWBjD21VPp6A5JyBE472z3_9IsJSimgpwQsjJIr5FajJz0wtLKMvndRW6qIa2Vlr-e4OGId3NHIK-kauEd8DM6nvBGLFM8zKN0ofVgT4Y1PF6YR5ILpi3vobatS3Y5I6gOgTMpRE_M3dSQDQBVszLjLxGYtvREzN4DOmouqfpE3JEbicX7a4kNtNnhdVaSAwXnw/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorboard<1.14.0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1VZv3kaZ-dT5nBKzytPQcBnkygi3cc77QZQUCr6XmjmXXzy... https://secure-web.cisco.com/1DuHaJXQMeMGT1jSh18-c60sFQ1TmVw4VULDPbDgadCNTI47e26ZawLYtcu-ujZdAJteq-1pdGekw7OpGhmeWrQL-0VXiVGTtvJQcJeSIH8_mQTXOMC8ovqeq-O5wXFMPpkhKqoDxso56hVb98qERwI5BPROunenEYXJv8gr0dodc1kermpsWy3XfhSka0JBLgbXTFltKHWk7fQdx4FV1JFTnnYlLLG5f2liyk4SmlIOwFJTX8AY9lNQHKqQ-6o5GJbBE5dblg1v36BJayT5IUA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0f%2F39%2Fbdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373%2Ftensorboard-1.13.1-py3-none-any.whl Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1IhrE7k_m7YDmRgRPh5W8ZzmqV43B8lVUOOYiNMRTeqsTJw... https://secure-web.cisco.com/1XjPxKgC0iuP1Vhu3UzHno87XzlnjbF2pyl1vq5mOTETI9BrRUnazrEbHy7UK6TmPif8eyWtvGs1rzU6bI5rT6qgrv4yiNEHmZHlJY6QJkHRD0q7a7c91ysMOQCHJdrD6pn9J_1RQt_OG5JmzWa7IZ_Gn8GGO6lpS9BnycJzJdUo23nNk4VHSU4y5N_NxQA8M7ro8UNUseOABYxb5nEbYOQZZOIpR2xCQTxowIQcyBFgXG8KIkj94wp1tjh2N6NrZcJDUbHCBfN4cW82gWhMn7w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbb%2F48%2F13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873%2Ftensorflow_estimator-1.13.0-py2.py3-none-any.whl Collecting gast>=0.2.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1uteelydE8-0HDs5onbZgRi1u42Wcg6GAlQxBRCj4uSOHca... https://secure-web.cisco.com/1qzsjLCKgYcK_AJgUNXaXcKJa1CddJXYChdKQELykHZC-EUd2AJ0eoT0tAPCKXNaY_7kg4dlrEFxz5h8FUkO2aoTDKnW3snDEaCp85v58NltmX_KSMrheD50JQyF9QLFbVXdiy2Z7ExoTQSRvQ4hpG8LsWCha9I1Rn5FxTwG5Bo_-9_RB5lCUnaLuq5M1TvzOR-biLFWPHSfOTKtn7CNBBlxPIYJopCnztUgxRPAxTHQKgQaJeFBktK8_ywPY-ASFFwONEInvLk3zYIcilFsl9w/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fb6%2F48%2F583c032b79ae5b3daa02225a675aeb673e58d2cb698e78510feceb11958c%2Fgast-0.4.0-py3-none-any.whl Collecting absl-py>=0.1.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1flssGRKx6rYuw5mBITzRH7hDGtuNhOeQsgwVg39dlp09K1... https://secure-web.cisco.com/1rpEEAxTMf8PfN_WvIbiyJFdfoA7Y7rn2ipzQcDVA6q4FmsVOQLwk1U6a2My_6yulIdyLy-ZUXDICgacq6s4qJzl-rDY8RU9dg0FYqrtZu5c_9o2QwD46IglNOB2TQveCkBsM1wfZ5cN7AZgKbovSM2gtSt8WCeWH-_2Lq7m1NKBE8YBNhOs0UgXVFcvYVeaaHV-cvclJPJVNEE8PjU6HlbUr5bcZnzBRknwLCfyYoUNBkAPoCDodOr-RtRZ6MjdiTd3nOfMgU0bVBZTYaSK_CA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.13.1) (1.14.0) Collecting grpcio>=1.8.6 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zlfCvWNyjTlmolvBLGGoscFNLu9RahMjuhJfx3nng5itUp... https://secure-web.cisco.com/1fTUp4MeMKUXUrQ58sWKdjndW3CRI_jbpUzXVRRTOECaWHjErEoXBVwlkdlSmnYPwp9gvcNHegNgwFeSwqScx8tjFPxPIQDOpiiP-W03TSXPdZ2TvvTq8QIgUEWIyusohWXPWrkVMEwAYCpwVBvp_I9EziQdb91JuXf8V-Cbfau4oSXddDTd7-eEV3no4L0fkatSSJU3ALAWCdhPI1a1sEw4LWwhtmOmlYFQEkDD-1iyYuuomdTc7XtT67D2AQis_GHlb21gY9J5pdKfOSCwtYQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0c%2F6f%2Fc5fcad9177ebf85e2adff2ad247de19718ac9710bff9574a65f2b8e3c5eb%2Fgrpcio-1.37.0-cp36-cp36m-macosx_10_10_x86_64.whl Collecting wheel>=0.26 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1ivP4kWnik6qi0MWExXjHPwBwiGvee8MJfgwfsOmti4e85T... https://secure-web.cisco.com/1poNuWMz0ObVfGvCkGzut1HFmJjZJtyKmvQPp0G2K2avMAxomloSuASyioKDZKQiSoujiOuolO7yWeHkrPLW79Ckt1w4soiaAIyXpRCuESYwygaIiSLFK67tonGund-ExmYc9PN5FSXt3SMw_1RSI4MogfvUO_CAebuQYlG1JnmcogsPnmlPWtaJKd9GHVBJFkMYywN7TntZNBzekSGQJlQOTdJkrGNhzfPBLkCE8jK1sqEl9p6z_En1apFzSplcrsVmY6LOzBMYVjnVYhAoDyQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F65%2F63%2F39d04c74222770ed1589c0eaba06c05891801219272420b40311cd60c880%2Fwheel-0.36.2-py2.py3-none-any.whl Collecting protobuf>=3.6.1 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/10A6_KYZCUDa-u0OaGkcVuR0t0c23p9lMTb7l5WWdJas8Kb... https://secure-web.cisco.com/1kt2o_IwS-W8A_eig0li7rWHm0T_fyTLCmZ4sGEkgsGdU0A1p8mvCevbhgwd1fdyLOKspluQjcqSWt2ORAys988l70bLLTTDs_hxhxrU-47PtdalBKu1gNH_QgPQ7gUY6vR5Bqvfd9vLdOq-XSH3lb4MyqFnArnFW5SdkbdvxkR-nZ8UKgybzdCLvb_69OpgX8bQWuw0imxNpt9hUDUCee_dQ3TVq-W3g1oWx0xDqA8o6kw6QuC6thu0vVW1dar10cGGO69GqJaPpALUetyOZXQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F0d%2F15%2F4889fb23511601659d68c84c58bfa63857e43e8a43edd5eda0e0ed641da2%2Fprotobuf-3.15.8-cp36-cp36m-macosx_10_9_x86_64.whl Collecting termcolor>=1.1.0 (from tensorflow==1.13.1) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1O0QGIUOxye0TonKk3piM-J0yprJBk3nHTiGet0d-BJR18R... https://secure-web.cisco.com/1jQ68HtnBlnk1hEhT7dMuObUh1XtixQNeCQhh-lDzo4oD-yW_22AOK_MOFMmEzReuurBYzCjI8DMiChSdHRERo6SbL0yQ2XtN7pXMK2ZnWNzVxOSx4BNuPW9Md_zEPgLYR5aT7FnwfQKhoMhapdehT9R_ZDrqRxiSnR9sGANkjMD8hCxItIYe1LugMIQkHQzJ-Vp1LC6T20SJshoft7JQUEkhxAabbPWSBO_5zrCfBOSidJvNq-cY22h9EFRQ2yvJ3m4gg8TcKIJ5Bw9gCVFuNg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F8a%2F48%2Fa76be51647d0eb9f10e2a4511bf3ffb8cc1e6b14e9e4fab46173aa79f981%2Ftermcolor-1.1.0.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 10:36 PM AJ ajcns1969@gmail.com wrote:
thank you so much. I just installed conda.
(base) MacBook-Pro-4:~ AJ$ conda -V conda 4.9.2
Is myenv /Aplications/freesurfer/7.1.0
thank you.
aj
On Fri, Apr 16, 2021 at 10:22 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *
Make sure you have conda installed
In your terminal, then
conda create -n myenv python=3.6
conda activate myenv
- Then you should be able to install TF 1.13
On Sat, 17 Apr 2021, 08:46 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *sorry for being non-tech, but how do I exactly do creating a conda venv with Python 3.6.
many thanks
aj
On Fri, Apr 16, 2021 at 9:56 PM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Hi AJ,
So tensorflow 1.13.0 is looking for Python 3.6 as far as I know. Python
=3.7 only supports TF2. Can you try creating a conda venv with Python 3.6
and try again?
On Sat, 17 Apr 2021, 08:23 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Thank you so much for your help.
Here's the error:
MacBook-Pro-4:~ AJ$ fspython -m pip install tensorflow==1.15 Collecting tensorflow==1.15 Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1FG_sj1fMzCoMNG2vcB-pT3ug4py9dhurcUYhjmNEZ1Bwa9... https://secure-web.cisco.com/1ZvNOAlnI2lRZHzC8bF1ZCoyoP8DTiHNr8j1wTUnCTH_6rls1cn1Sa-HIOOKz42STunfJWtpRhpfYWUR_hQKpwEzbay5arD5d6sIsm-zCHNqBRHOGhG_c912RuMdn7fm8LtWxtipJ4aSJAUpgiysGWS8w8AEB4PmmBA4FCvzgCS7HWOquoWaPvoIV-puUl877869Gu2Kfi-yt92oHjOOjIdJYq_6q-JZZeRmsqjXApUoKuxETrkMNlL5XP05DG2eIQ_15EXbsChlaMEZlEtVHSg/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Ffe%2F01%2F997a5d608162cf5371dae49e8cb68baaa5773b091a3e74576ea30dae51e6%2Ftensorflow-1.15.0-cp36-cp36m-macosx_10_11_x86_64.whl Requirement already satisfied: six>=1.10.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.14.0) Collecting keras-applications>=1.0.8 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1BIkL9XoPzcOspdhU-dcDw-FbkGhrxXhoW4DGU4NgAcseS3... https://secure-web.cisco.com/1DcmYmbuovnDyI2Z0h-owN-BxOcIjVXAXtKR-NCsfl6cFq6AWJWBS4YXYdKMpUZiuJxvlniImLirgDwxswqgvM7RTyJnU_e6xefrYlCx-R_Mvz_yuKLts2pFOaj0gKRVkXxqqzhrYMJaugGjLlGvG1yFT_Oo7CW-y6szD-arokgU94mcZ6UBN4BTSwTLCzAJd5tTgnbXX5P1VrksWcvF8jjgydRzemkQ9reAB8CdMD7b4TEMvNF2BRT9yxwX8LR6X1V1WbDOdmlqkiDpYttHssA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F71%2Fe3%2F19762fdfc62877ae9102edf6342d71b28fbfd9dea3d2f96a882ce099b03f%2FKeras_Applications-1.0.8-py3-none-any.whl Collecting tensorflow-estimator==1.15.1 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/15tGK3GRxuGyzVSm01JAmFtAURSnaDL1tZcM4BPPVMWUagb... https://secure-web.cisco.com/1N2EMaYVq0NsXllEiLWsAFPAXf5YA198UHng2nrMoKsayJ7gEzGjwCrkD4acaacg4AcPDtJVjS3IxlDL-NOzP6sbeQcRBgA2kg_FT1hcjidY_clABoclxq8WNcFmnDgt3wNeoI6xRYtCf0xHj2EnCiXgVLXSXGFFgX-I9d6BJjAmIiMg_vX3JyhUOWO77cAJ_OlTT7JV02fbfAvqijtkwFmLuWcNrc_MfEfNd0LSOmLRURrH6eXS94NBI6ZGznd7jNKH0PvdlWuNp6og69tcJrA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fde%2F62%2F2ee9cd74c9fa2fa450877847ba560b260f5d0fb70ee0595203082dafcc9d%2Ftensorflow_estimator-1.15.1-py2.py3-none-any.whl (503kB) 100% |████████████████████████████████| 512kB 5.8MB/s Collecting opt-einsum>=2.3.2 (from tensorflow==1.15) Downloading *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1ralIekDP1PL_vc7zPCcv6gCAZKUM-URVgVAWCrFezCqqhL... https://secure-web.cisco.com/1FpEwtMXkNi56QvaosjmSa66qprPWMnvB6zsh7VNx7cXMaxxI_bZ5JzInsqIWxxqatws5D-9aegnNMRCn3t2tGEa2rCiSAS9lCd1FciKhcsH3xSVdkU20hA8EyidzUzzhxtBr7Qy_-Amu7LMri1PneDYx-R7DP3GvWPnca6w_SiXsXu9ukJ5Y3QMYpbWL_YzM85_9K4wUlg1PHcBVJMhxGvQFVaJnMzJr6wZYiwBEpjI7CiKHGJSddtp8eOKuqfWfJSZXSVGtU7XUz9muUfYHdA/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2Fbc%2F19%2F404708a7e54ad2798907210462fd950c3442ea51acc8790f3da48d2bee8b%2Fopt_einsum-3.3.0-py3-none-any.whl (65kB) 100% |████████████████████████████████| 71kB 13.9MB/s Requirement already satisfied: numpy<2.0,>=1.16.0 in /Applications/freesurfer/7.1.0/python/packages (from tensorflow==1.15) (1.18.4) Collecting absl-py>=0.7.0 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1flssGRKx6rYuw5mBITzRH7hDGtuNhOeQsgwVg39dlp09K1... https://secure-web.cisco.com/1CF6wIxhTxNhqjOHCO0n_o68HO5NQrPPCEHVucjzREKB9ieVQbhZP8MSkSBi-NAOcNglybTP9_CVVeV3VE8Vafk4P02rJyPpvdfcoWQ_PWqxlkozfnuKaLdAxGdiODrs4XUefw__9r0r3BQIHQgsuH6uJp7HVn2BehLwQermDhk0UUDd95FBiHkvf0JUG1_lzdsggkZLwxToi4KpEgD9JmP24z8QKWkW_1X6UfRH-q3pGNVFDG_atVYTFOcNVwiV-eZ9i8YZTJuoM6l-3EvHEuQ/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F92%2Fc9%2Fef0fae29182d7a867d203f0eff8296b60da92098cc41db33a434f4be84bf%2Fabsl_py-0.12.0-py3-none-any.whl Collecting wrapt>=1.11.1 (from tensorflow==1.15) Using cached *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1tOpXJ6nGwOIvkp-ps7gWbVSfRtwfIh2CvoTx4srgbUoWnP... https://secure-web.cisco.com/1VKtu9AcWmZQ4tg3wO1i429lGQp7kPtE0hXoQMMa0KR2z-hjOzWyCqWVpqFakWoVcoh6auhwH6aj7D46hnfK5nQbxckk9IhbIHNt0toB87Jt0z2H83vwrdUqJ1IhAmnbEXh81irpr638yRi80Iy2u36_nd5jfP7Ik3I0PKpR2Ldv34gVuZNGgbr1toe2yBmvkivaagOjctjw_-5HWD_Ycpf0owWYQRI5M1QNXpZlONuZmvsxV_Zz3djcqKrVGt-Ngnp57qfncblWSj_cPDyZEow/https%3A%2F%2Ffiles.pythonhosted.org%2Fpackages%2F82%2Ff7%2Fe43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797%2Fwrapt-1.12.1.tar.gz dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
On Fri, Apr 16, 2021 at 12:45 PM Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
Hi AJ,
Freesurfer ships its own python distribution, so it doesn’t matter what you have installed on your system. Can you let us know the specific version of macOS you are using and send the full error report from pip?
Thanks
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of AJ < ajcns1969@gmail.com> *Date: *Friday, April 16, 2021 at 11:56 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] error installing tensorflow
External Email - Use Caution *Hi,
I have python both versions of python installed:
MacBook-Pro-4:~ AJ$ python3 --version Python 3.9.4 MacBook-Pro-4:~ AJ$ python --version Python 2.7.10
when installing fspython -m pip install tensorflow==1.13.1, I get the error:
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
Is the issue that freesurfer is looking for python3? I am not sure how to get past this installation of tensorflow?
Thank you for your help.
AJ
On Fri, Apr 16, 2021 at 12:58 AM Vishnu S vishnudaboss@gmail.com wrote:
External Email - Use Caution *Can you try downgrading to python 3.6 in a conda env? Python 3.7 support only TF 2.0 and higher.
On Fri, 16 Apr 2021, 11:24 AJ, ajcns1969@gmail.com wrote:
External Email - Use Caution *Hi,
I am having trouble installing: fspython -m pip install tensorflow==1.13.1
Not sure what the issue is. Any help would be greatly appreciated.
best
AJ
Error message while installing:
dyld: lazy symbol binding failed: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3 Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: _utimensat Referenced from: /Applications/freesurfer/7.1.0//python/bin/python3
Expected in: /usr/lib/libSystem.B.dylib
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1RH8B-mspcxcCMTj4oKqYSr1GH59O3_OYduSDRxO5qS0AV24oBD5aWIo5z5zkVq11UOKmuWRg73LPL6ytL8nRQnhgqWgPYCTsEXlHi54o8I7pTV5x8yadd9zn3s4-dffSDIPttOT63H32kPqemaUJewqwqh7wsVfNVCe3KKoy1KRy7iIoHOWPMIl_GR0wAeyHOw2aDxFSUi6PLOE4HO_qfyaeNaahXjYsS3bN6k92bMiUciImOKIhwBB0-JKt-KSHZxcXcLq4Uj8dS1PecPhvUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/15Mi3hxeDDGFfvS_iDtAMO30EQeOm-pv_cV-Tx6Tvt0A-XUAU6tnccwVldP4WAeO7j2U-jezlH3TitYyMlaTcn1zsm8KuVK2Hr63TCws2ltzwsznvIHeMcR1aiNeENbpj3INJ0_LLxh3cUinqEwvaa9mdl-yOOFg8Sc6Ff9Va7pprtd8ua6EkrqQ0H9qR3wB2nXTpxmBzw_i8rdVKH-SAEQoLUNA75lgzBelEYkVnNzUZSI9lroVmv8KNK2GUF4-Dy6JPpW6kHtdYMBkiUmX1uA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1moGJSKrlAv__zKfFKWKLJ7M83P3Xw4JOHTCh6tbKrdBqMc1NsPo1m6V5H8ijpyI6MsP7ymnbc3VKfSSb8eJ2XrvGs2QEGHlvyI4QkAyVprpKW_uacCWiTURMFfN9eT-NLhF0SbFBBtgM-Y9gtk6kxPfoiNKEKtpx0oO4by6comkJhLK9quf6D1jx_Muqab0SvSIR-ViJ6TSMIdpjN-6lhbl-kFwVKlBaE5XU-m0LSmmre1T_NN_vIJsp-Vx6_IiefU9-oO-ofy1vaL2YrmngOw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1gxEq9RTXzjJyTM_I59m3P05jiMMmW-zjC4xlr5PqLfAkeeUttgmOijncAOf6omd2IK_nL_SCfnwu0l7rVodyvBZQ8UR8_jO7A0_hNudIRo_n6px8Cy6W_YRwJlkUWnN6TGyomYxaSw1-0hAdJcF0FBtACHeM1VCtO9zgmA-tirhiSifmfSkDpkY3CBHbr4gQ-Y1V-KRsopE113rvx0b3fhy2CvB3VrM8c523XSvgJVmFTcpUT7WqCLQg5Nf_k86e4HMY3uUfCmO3EcWiNL6mIA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1vYAfyo16dc3rKqTeir4GG2Ca6Z9reqbEk9je8xLgF18VwRUjT286klvob-lwcQJobZ5eTFp2ask1_-AOUnXiHDPqcWHq_jUPm-vXFQws0M1mj-UE9qXE3QkKlf4wQ6lIxDgGibT-YSWu8C8ezW--ED6CVeVCcLGok2tM5-HIRLMPY3VhHO_1GQEmV_TXkV5TQnGnpHymYP432OWtROK3SmXY2S-X5cdRH4rZTdNSLmVveqrrHEp9svbcRXcsfOY4vZU2LrewFXJVukQdjutvWw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1mvADFrekb5mtfprKjYrFfGWCr1kU6jnqZf9tRG09B1gBtE4JnWNnCe7MaqRMdg_HdEU9DNQO-R3bHCPgDUjlYyUA9YjxSCRnwY_nSl_Kgfg6VG7eJnc5ZV1opTZkeOczbvS-bGGKvXDN_29SPq37fSjjCKFlX7QF1bavYN-2tMl8I8mz1P_0eay8LDzyWWz7HozxbqCVhcW28JPBRQIJaOI507BaNAM4M1AYD7RcLMGW6krgKuGaC07RMuebKLawar8ZVeT_0xeZNyCBa6A9sg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1nTsvD-T0QbZolTNc06QYMW9tulNlz71vh6y0GC3FpoIfX75y6FhmROtJ5WCUHgUJX1VRCWrR4utxTBgGkKONpbjHGoFWzXV20txwg7JFmoSi0HOsswf3UDqybpmSs51W-3TXdlhjpHm8ngffxhIhADvINE3E8RqNNYNvI-Zo3YagyLpl8YcyJeY-nJLB9GDBQ08LY0xJHzJTZ11dUHOWEvhGdRg5Va7G6mn_Xk9DJIPId7qKKGpm40pHguO-9uiXjjtbSSh-XLPeZ9-GZAjOtA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1YmFGFzR3EkueAiUI7cHRmsLfqhphljKmbbIy68jcG8QUGwU1yTmZtpcAi_YD7EoaXcaZFt-5QF1fsYx2tdk7q9HAJaqZRRqw-FQVhT_JImfOQL9kOAyyBzL08z3USkkwcxWk6NA5V2lQPx5BAQALfw7FZbQLQ1wzhzryXQQpiYdq1kgCG0f8GoHwOC7ezVi0JvVqB-hiynwZ8EbasEx3XYwtOVPn02TlqDWXOYEVGapxWtF_arV3Jl6E6B2c8G3lNN1GvIErZCKg4NM9NlOPVA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1f7O27te6_UOTpNeI_HJbjCyerTIRX2VmFg2lP0pOAunovav43zNa3ZHnN2Sy7N1SLwZ4FE7bbml-OWY9ZkuILVAXKgQQwqM7zhXh2P7Wm7NCuPjJUQarAyUBJcKcldWLNU0zxsoLJkwYkrMHTNpbD1ypBnNxu1QyJjDfcxPWGWohk_QRuTyLy7f9yOJ-6ehNBxPn_wMB3-fw3Or7Ov2aelVKm3bh_GqGX490svYiWO7ASaBEx1ERQGPE6bAR6dVWzwv5T87Cy-wK7CECaLam5w/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1USoxCQLLFPcqno7qUvJuGSFjtNjF3l8vpIFF7qF9o4Ra0N_MLWWL7M87GKjdejHJ79f3dK3gmctxvCQaDrbrXl_m8KLo14psE6xaN66E1oOmew1I8T486NaRt5Kv-mUFBXkjjmfDNPK79kq2okFt9_VMOQuhB8C9_a_GTL2nS1opdVOVJq5rUTth7nloeTf8I-Ro_n24gJ3wSnRpKsy9qfQQ9dBMiV78r1Tydxjm1KBxEy8_OjF1Di2BqNALmYTeyEfSxW9fCtCvu3KoehbrMQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1vvZGgKZVj-CtqUphDMIwxGswN3LxWl_1r6v_VepBICX4W7vm_ne_QgDYB5CovDfKT_fWX_JH39y43RaJWM2hdaBWEah4o9EfyEHN9CRZIqvf65nVs4UK8LX_Dgru4EsQ3o9TZNDB8KZ_nUgcM9HY16aRcPvrU98OXB3_0GNwv_sy5CxMDOK3x1lW-FRYvtGpXE9an8iQ_3O1JZM3nUvYT05Wpe997m5uRCZS7vQ3LJLHqYP_rJYZS0Rg9EMsbIwXhvyYgiS3Wan-al4VYfWfvA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s... https://secure-web.cisco.com/1Un5h-yDjRPV6FJWfgQ96LogdMb8t_KkfyuaSiMr-xqGPMx62APX_aCR4Gi2niYSHKHk7U8UiofDhAk5L0eqgw6K2UXWNTjH-3j6XMMF0wOWDNwqyWKkyxbQ5EUprCzl8_TiGaCh_AKGApzOU2U0TxMnwaNNHg6X49iZ-gkZdR3FNv94-mFUUo9XqB_BchLPhsI6TZlz671XGf5E8uOdZ-OcLk42WDHVsufNn-0vQC6m8UHY8PTUkXuurOGNwIZz8gPPUr2L1YLhTEi0dGAwxBg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1L7RGRYlmU33sUQ7TFbILtkaHZlB1t3dYVZG52QJdt8165s...
freesurfer@nmr.mgh.harvard.edu