Hi all When I run selxavg3-sess with a sessid which contain more than six subjects, the procedure report some error as following: Error in ==> fast_selxavg3 at 270
??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many files
open.
>>
/nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_selxavg3.m
???
/nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files open.
>> >> >> >> >> >> >> >> >> >> >> >> ???
/freesurfer/fsfast/toolbox/fast_selxavg3.m: Too many files open.
??? /freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files open.
??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many files open.
ERROR: fast_selxavg3() failed\n
Is this a bug or my misused? My freesurfer version is stable 4.0.1. I guess some fclose(files) is missed in fast_selxavg3.m.Please help us.
Thanks very much.
Zonglei Zhen
If you type:
limit
what is the number of descriptors? Typically its 1024 or more. If its a small number, you can increase by:
unlimit descriptors
Nick
On Thu, 2008-04-17 at 11:16 +0800, Zhen Zonglei wrote:
Hi all When I run selxavg3-sess with a sessid which contain more than six subjects, the procedure report some error as following: Error in ==> fast_selxavg3 at 270
> ??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many
files open.
>
/nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_selxavg3.m
??? /nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files open.
> >> >> >> >> >> >> >> >> >> >> >>
??? /freesurfer/fsfast/toolbox/fast_selxavg3.m: Too many files
open.
??? /freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files
open.
??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many files
open.
> ------------------------------------------
ERROR: fast_selxavg3() failed\n
Is this a bug or my misused? My freesurfer version is stable MailScanner has detected a possible fraud attempt from "4.0.1." claiming to beMailScanner has detected a possible fraud attempt from "4.0.1." claiming to be 4.0.1. I guess some fclose(files) is missed in fast_selxavg3.m.Please help us.
Thanks very much.
Zonglei Zhen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks,Nick.
The limit descriptors our system is 1024. Is not enough for six subjects( six run per subject)?
Thanks again.
Zonglei Zhen
2008/4/17, Nick Schmansky nicks@nmr.mgh.harvard.edu:
If you type:
limit
what is the number of descriptors? Typically its 1024 or more. If its a small number, you can increase by:
unlimit descriptors
Nick
On Thu, 2008-04-17 at 11:16 +0800, Zhen Zonglei wrote:
Hi all When I run selxavg3-sess with a sessid which contain more than six subjects, the procedure report some error as following: Error in ==> fast_selxavg3 at 270
>> ??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many
files open.
>>
/nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_selxavg3.m
???
/nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files open.
>> >> >> >> >> >> >> >> >> >> >> >>
??? /freesurfer/fsfast/toolbox/fast_selxavg3.m: Too many files
open.
??? /freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files
open.
??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many files
open.
>> ------------------------------------------
ERROR: fast_selxavg3() failed\n
Is this a bug or my misused? My freesurfer version is stable MailScanner has detected a possible fraud attempt from "4.0.1." claiming to beMailScanner has detected a possible fraud attempt from "4.0.1." claiming to be 4.0.1. I guess some fclose(files) is missed in fast_selxavg3.m.Please help us.
Thanks very much.
Zonglei Zhen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Yes, that should be more than enough, so the problem is something completely different. Others might have something to suggest.
On Thu, 2008-04-17 at 12:23 +0800, Zhen Zonglei wrote:
Thanks,Nick.
The limit descriptors our system is 1024. Is not enough for six subjects( six run per subject)?
Thanks again.
Zonglei Zhen
2008/4/17, Nick Schmansky nicks@nmr.mgh.harvard.edu: If you type:
limit what is the number of descriptors? Typically its 1024 or more. If its a small number, you can increase by: unlimit descriptors Nick On Thu, 2008-04-17 at 11:16 +0800, Zhen Zonglei wrote: > Hi all > When I run selxavg3-sess with a sessid which contain more than six > subjects, the procedure report some error as following: > Error in ==> fast_selxavg3 at 270 > >> >> >> ??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many > files open. > >> >> >> > >> /nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_selxavg3.m > >> > >> ??? /nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files open. > >> >> >> >> >> >> >> >> >> >> >> >> >> >> > >> ??? /freesurfer/fsfast/toolbox/fast_selxavg3.m: Too many files > open. > >> ??? /freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files > open. > > >> >> ??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many files > open. > >> >> >> ------------------------------------------ > ERROR: fast_selxavg3() failed\n > > Is this a bug or my misused? My freesurfer version is stable > MailScanner has detected a possible fraud attempt from "MailScanner has detected a possible fraud attempt from "4.0.1." claiming to be4.0.1." > claiming to beMailScanner has detected a possible fraud attempt from > "MailScanner has detected a possible fraud attempt from "4.0.1." claiming to be4.0.1." claiming to be MailScanner has detected a possible fraud attempt from "4.0.1." claiming to be4.0.1. > I guess some fclose(files) is missed in fast_selxavg3.m.Please help > us. > > Thanks very much. > > Zonglei Zhen > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
But after I run unlimit descriptors, the number of descriptors is still 1024. Wjat is wrong?
2008/4/17, Zhen Zonglei zonglei.fsl@gmail.com:
Thanks,Nick.
The limit descriptors our system is 1024. Is not enough for six subjects( six run per subject)?
Thanks again.
Zonglei Zhen
2008/4/17, Nick Schmansky nicks@nmr.mgh.harvard.edu:
If you type:
limit
what is the number of descriptors? Typically its 1024 or more. If its a small number, you can increase by:
unlimit descriptors
Nick
On Thu, 2008-04-17 at 11:16 +0800, Zhen Zonglei wrote:
Hi all When I run selxavg3-sess with a sessid which contain more than six subjects, the procedure report some error as following: Error in ==> fast_selxavg3 at 270
> >> ??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many
files open.
> >>
/nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_selxavg3.m
???
/nfs/h1/r1/jliu/new_soft_test/freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files open.
> >> >> >> >> >> >> >> >> >> >> >> >>
??? /freesurfer/fsfast/toolbox/fast_selxavg3.m: Too many files
open.
??? /freesurfer/fsfast/toolbox/fast_fileexists.m: Too many files
open.
> ??? /matlab2006b/toolbox/matlab/iofun/tempname.m: Too many files
open.
> >> ------------------------------------------
ERROR: fast_selxavg3() failed\n
Is this a bug or my misused? My freesurfer version is stable MailScanner has detected a possible fraud attempt from "4.0.1." claiming to beMailScanner has detected a possible fraud attempt from "4.0.1." claiming to be 4.0.1. I guess some fclose(files) is missed in fast_selxavg3.m.Please help us.
Thanks very much.
Zonglei Zhen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Nick Schmansky -
Zhen Zonglei