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Hi, I have 2 samples with schizophrenic patients. The first one was analyzed with FreeSurfer version 6, and the second one with version 7. Is it possible to compare results using two different versions? Juan Carlos Rivas, MD, PhD
El jue, 23 feb 2023 a las 9:16, freesurfer-request@nmr.mgh.harvard.edu escribió:
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Today's Topics:
- Visualizing transparent surface with non transparent annotations (Leonardo Tozzi)
- Failing to execute QDEC (vittal korann)
- Re: different clusters in mri_surfcluster output versus viewing in Freeview (Huang, Yujing)
- Re: segmenThalamicNuclei.sh exited with ERRORS (beh?et ayy?ld?z)
- Re: Extracting brain volume seperately (Douglas N. Greve)
- Re: Nuisance regressors (Douglas N. Greve)
- Please unsubscribe me (Manuela Dorado Novoa)
- Re: Hole in the insula (Douglas N. Greve)
- Re: Correlating and/or linear regressing surface overlays (Douglas N. Greve)
- Re: different clusters in mri_surfcluster output versus viewing in Freeview (Smith, Christine)
- Re: mri_easyreg tool (Iglesias Gonzalez, Juan E.)
- MGH35 template (Maffei, Chiara,PHD)
- Re: [External] Re: 7.3.2-patch issues - thalamic segmentation (Kumar, Avnish)
- Re: mri_robust_register --minsize (Reuter, Martin,Ph.D.)
- Re: [External] Re: 7.3.2-patch issues - thalamic segmentation (Aaron Tanenbaum)
Message: 1 Date: Wed, 22 Feb 2023 19:34:40 +0000 From: Leonardo Tozzi ltozzi@stanford.edu Subject: [Freesurfer] Visualizing transparent surface with non transparent annotations To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Message-ID: < BYAPR02MB5352E6F3CF76C8B3FC793BD0A9AA9@BYAPR02MB5352.namprd02.prod.outlook.com
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External Email - Use CautionDear Experts,
I would like to use Freeview to achieve the following.
I would like to visualize a transparent brain surface, with only some annotations visible. In other words, I would like the surface to be transparent, but the annotations I choose to visualize to not be transparent.
Is there a way to achieve this?
Thank you,
Leonardo Tozzi, MD, PhD Director of Computational Neuroscience & Neuroimaging Program Stanford Center for Precision Mental Health and Wellness Stanford University ltozzi@stanford.edumailto:ltozzi@stanford.edu | (650) 5615738
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Hi Juan,
It is possible, but not recommended because differing versions of FreeSurfer will introduce biases into the analysis.
-Paul
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Juan Rivas jcrn12@gmail.com Sent: Thursday, February 23, 2023 10:00 AM To: freesurfer@nmr.mgh.harvard.edu Cc: juan carlos rivas nieto Subject: Re: [Freesurfer] Freesurfer Digest, Vol 228, Issue 26
External Email - Use Caution
Hi, I have 2 samples with schizophrenic patients. The first one was analyzed with FreeSurfer version 6, and the second one with version 7. Is it possible to compare results using two different versions? Juan Carlos Rivas, MD, PhD
El jue, 23 feb 2023 a las 9:16, <freesurfer-request@nmr.mgh.harvard.edumailto:freesurfer-request@nmr.mgh.harvard.edu> escribió: Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visit MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1cNeKOSCv3wTRW7YJdo3QUKmDB2ind2BwutfXTr5lU1Bn-4npaTtBCpkVXzFXcQiPYJxM0uAhZrCoK3rhUDsSQdeYroem7n_7mgCd7G8ieWUu4B5Y9qWpUhzbwC8--4RlM2Xs0AysG0rRBIxErFTf6zpq9UwFzmulN2JN-9eweV6_dB24gO9-lYK-SyLe5jGn6gg8ktEJcxZwQS-ffZJ-aKbe-E_sVxW9eEHnx7J83-deE-XVXAk5YB7fl3smbMsBf3k0vbCcySBOVh00gMxmp0ZiQqd8IL2z5bnIzPw5n6oRRk_4BIYt7WsCDNOeIhJLlcl4EIBDexdJkqPri-_ngg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edumailto:freesurfer-request@nmr.mgh.harvard.edu
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Today's Topics:
1. Visualizing transparent surface with non transparent annotations (Leonardo Tozzi) 2. Failing to execute QDEC (vittal korann) 3. Re: different clusters in mri_surfcluster output versus viewing in Freeview (Huang, Yujing) 4. Re: segmenThalamicNuclei.sh exited with ERRORS (beh?et ayy?ld?z) 5. Re: Extracting brain volume seperately (Douglas N. Greve) 6. Re: Nuisance regressors (Douglas N. Greve) 7. Please unsubscribe me (Manuela Dorado Novoa) 8. Re: Hole in the insula (Douglas N. Greve) 9. Re: Correlating and/or linear regressing surface overlays (Douglas N. Greve) 10. Re: different clusters in mri_surfcluster output versus viewing in Freeview (Smith, Christine) 11. Re: mri_easyreg tool (Iglesias Gonzalez, Juan E.) 12. MGH35 template (Maffei, Chiara,PHD) 13. Re: [External] Re: 7.3.2-patch issues - thalamic segmentation (Kumar, Avnish) 14. Re: mri_robust_register --minsize (Reuter, Martin,Ph.D.) 15. Re: [External] Re: 7.3.2-patch issues - thalamic segmentation (Aaron Tanenbaum)
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Message: 1 Date: Wed, 22 Feb 2023 19:34:40 +0000 From: Leonardo Tozzi <ltozzi@stanford.edumailto:ltozzi@stanford.edu> Subject: [Freesurfer] Visualizing transparent surface with non transparent annotations To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Message-ID: <BYAPR02MB5352E6F3CF76C8B3FC793BD0A9AA9@BYAPR02MB5352.namprd02.prod.outlook.commailto:BYAPR02MB5352E6F3CF76C8B3FC793BD0A9AA9@BYAPR02MB5352.namprd02.prod.outlook.com>
Content-Type: text/plain; charset="us-ascii"
External Email - Use Caution
Dear Experts,
I would like to use Freeview to achieve the following.
I would like to visualize a transparent brain surface, with only some annotations visible. In other words, I would like the surface to be transparent, but the annotations I choose to visualize to not be transparent.
Is there a way to achieve this?
Thank you,
Leonardo Tozzi, MD, PhD Director of Computational Neuroscience & Neuroimaging Program Stanford Center for Precision Mental Health and Wellness Stanford University ltozzi@stanford.edumailto:ltozzi@stanford.edu<mailto:ltozzi@stanford.edumailto:ltozzi@stanford.edu> | (650) 5615738
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freesurfer@nmr.mgh.harvard.edu
-
Juan Rivas -
Wighton, Paul