im trying something novel with a veryb young brain, i ran freesurfer standard stream and got decent results and then did some manual editing to fix a skull struip problem and reran and now it is detecting a large defect, is there a way i can look at the data to see what topological defect it is finding and where ?
greg
Hi Greg
there is a ?h.defect_labels file that gets created in curvature format I believe that you can overlay (the overlay is the defect number of each connected component). I think Doug might have something even better, but I can't remember
cheers Bruce
On Mon, 17 Feb 2014, Gregory Kirk wrote:
im trying something novel with a veryb young brain, i ran freesurfer standard stream and got decent results and then did some manual editing to fix a skull struip problem and reran and now it is detecting a large defect, is there a way i can look at the data to see what topological defect it is finding and where ?
greg _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Greg, use the defect-seg script to create segmentations and labels. See the help for more info. doug
On 2/17/14 1:42 PM, Bruce Fischl wrote:
Hi Greg
there is a ?h.defect_labels file that gets created in curvature format I believe that you can overlay (the overlay is the defect number of each connected component). I think Doug might have something even better, but I can't remember
cheers Bruce
On Mon, 17 Feb 2014, Gregory Kirk wrote:
im trying something novel with a veryb young brain, i ran freesurfer standard stream and got decent results and then did some manual editing to fix a skull struip problem and reran and now it is detecting a large defect, is there a way i can look at the data to see what topological defect it is finding and where ?
greg _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Gregory Kirk