I problem with a MRI set that stops recon-all very early in the process. There is a warning before : "If you find problems, please let us know", but I don't think that text is related to the error. Suggestions?
Regards
Pål G. Larsson
I think you have a problem in the voxel size. *The physical sizes are (280.00 mm, 280.00 mm, **492.00 mm**), which cannot fit in 256^3 mm^3 volume.*
----------------------------------------------------------- Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom --- Novo Netfilter 3.0 www.netfilter.com.br
2009/3/27 Pål Gunnar Larsson Pal.Gunnar.Larsson@epilepsy.no
I problem with a MRI set that stops recon-all very early in the process. There is a warning before : "If you find problems, please let us know", but I don't think that text is related to the error. Suggestions?
Regards
Pål G. Larsson
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
wow, is it really that big or did you zero-pad it? On Fri, 27 Mar 2009, Pedro Paulo de Magalhães Oliveira Junior wrote:
I think you have a problem in the voxel size. *The physical sizes are (280.00 mm, 280.00 mm, **492.00 mm**), which cannot fit in 256^3 mm^3 volume.*
Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom --- Novo Netfilter 3.0 www.netfilter.com.br
2009/3/27 Pål Gunnar Larsson Pal.Gunnar.Larsson@epilepsy.no
I problem with a MRI set that stops recon-all very early in the process. There is a warning before : "If you find problems, please let us know", but I don't think that text is related to the error. Suggestions?
Regards
Pål G. Larsson
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Pål,
the log file also says:
Original Data has (0.546875, 0.546875, 12) mm size and (512, 512, 41) voxels.
is this a structural volume? it only has 41 slices.
Nick
On Fri, 2009-03-27 at 07:57 -0400, Bruce Fischl wrote:
wow, is it really that big or did you zero-pad it? On Fri, 27 Mar 2009, Pedro Paulo de Magalhães Oliveira Junior wrote:
I think you have a problem in the voxel size. *The physical sizes are (280.00 mm, 280.00 mm, **492.00 mm**), which cannot fit in 256^3 mm^3 volume.*
Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom --- Novo Netfilter 3.0 www.netfilter.com.br
2009/3/27 Pål Gunnar Larsson Pal.Gunnar.Larsson@epilepsy.no
I problem with a MRI set that stops recon-all very early in the process. There is a warning before : "If you find problems, please let us know", but I don't think that text is related to the error. Suggestions?
Regards
Pål G. Larsson
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
can you send us the output of recon-all? On Fri, 27 Mar 2009, Pål Gunnar Larsson wrote:
I problem with a MRI set that stops recon-all very early in the process. There is a warning before : "If you find problems, please let us know", but I don't think that text is related to the error. Suggestions?
Regards
Pål G. Larsson
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Nick Schmansky -
Pedro Paulo de Magalhães Oliveira Junior -
Pål Gunnar Larsson