Hello,
I got this error while trying to generate the stats table on qdec on my own data:
What I don't understand is for the 1st error, where it says it can't locate aseg.stats for 240, the aseg.stats file is in subject 240's file. But what is the reason for the 2nd error?
asegstats2table --meas volume --tablefile /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis/qdec/stats_tables/aseg.volume.stats.dat --subjects 240 239 165 178 168 169 176 170 177 180 181 187 199 203 206 151 210 208 209 211 212 242 215 219 220 226 229 244 243 249 254 248 255 250 252 246 261 262 265 268 273 279 280 282 283 291 292 294 297 298 299 300 289 Building the table.. SUBJECTS_DIR : /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis ERROR: cannot find /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis/240/stats/aseg.stats Use --skip flag if you want to continue in such cases ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWTkUtilities.cxx, line 230 vtkKWQdecApp (0xbc320e8): Script: vtkTemp3 GenerateStatsDataTables Returned Error on line 1:
Any help would be greatly appreciated.
Thanks, Fatima
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Fatima,
Do the aseg.stats files exist? The second error concerning vtk will go away once the first error (the missing aseg.stats file) is fixed (run recon-all -s 240 -segstats).
Nick
On Fri, 2012-03-30 at 12:39 +0200, Ahmed, F, Me wrote:
Hello,
I got this error while trying to generate the stats table on qdec on my own data:
What I don’t understand is for the 1st error, where it says it can’t locate aseg.stats for 240, the aseg.stats file is in subject 240’s file. But what is the reason for the 2nd error?
asegstats2table --meas volume --tablefile /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis/qdec/stats_tables/aseg.volume.stats.dat --subjects 240 239 165 178 168 169 176 170 177 180 181 187 199 203 206 151 210 208 209 211 212 242 215 219 220 226 229 244 243 249 254 248 255 250 252 246 261 262 265 268 273 279 280 282 283 291 292 294 297 298 299 300 289 Building the table.. SUBJECTS_DIR : /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis ERROR: cannot find /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis/240/stats/aseg.stats Use --skip flag if you want to continue in such cases ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWTkUtilities.cxx, line 230 vtkKWQdecApp (0xbc320e8): Script: vtkTemp3 GenerateStatsDataTables Returned Error on line 1:
Any help would be greatly appreciated.
Thanks, Fatima
E-pos vrywaringsklousule
Hierdie e-pos mag vertroulike inligting bevat en mag regtens geprivilegeerd wees en is slegs bedoel vir die persoon aan wie dit geadresseer is. Indien u nie die bedoelde ontvanger is nie, word u hiermee in kennis gestel dat u hierdie dokument geensins mag gebruik, versprei of kopieer nie. Stel ook asseblief die sender onmiddellik per telefoon in kennis en vee die e-pos uit. Die Universiteit aanvaar nie aanspreeklikheid vir enige skade, verlies of uitgawe wat voortspruit uit hierdie e-pos en/of die oopmaak van enige lêers aangeheg by hierdie e-pos nie.
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This e-mail may contain confidential information and may be legally privileged and is intended only for the person to whom it is addressed. If you are not the intended recipient, you are notified that you may not use, distribute or copy this document in any manner whatsoever. Kindly also notify the sender immediately by telephone, and delete the e-mail. The University does not accept liability for any damage, loss or expense arising from this e-mail and/or accessing any files attached to this e-mail.
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Nick Schmansky