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Dear Dr. Douglas N. Greve,
Thanks to you, I could have a binary disk approximately 3mm in radius by the codes you told me (https://secure-web.cisco.com/1z0F3-vP1KDJI6B_AsTyKAaKNmMd0vO7tGkwv_YiAe4mgtF...):
mri_volsynth --dim-surf fsaverage/surf/lh.white --pdf delta --delta-crsf ${vertexno} 0 0 0 --0 delta.mgh mris_fwhm --i delta.mgh --o delta.sm3.mgh --s fsaverage --hemi lh mri_binarize --i delta.sm3.mgh --min 0.5 --o delta.sm3.bin.mgh
I have sincerely appreciated your help.
Now I'm wondering how to modulate the radius. I guess I can do it by adding --fwhm option to mris_fwhm command, for example: mris_fwhm --i delta.mgh --o delta.sm3.mgh --s fsaverage --hemi lh --fwhm 5 At the end, I will get a binary disk with 5mm in radius. Am I right? And does this mean that --fwhm 3 is default for mris_fwhm? How could you define 3mm?
Kind Regards, Andy (Junghyun) Kim
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oh, you should have used --fwhm 3 on that first command, and if you want 5mm then use --fwhm 5
On 5/19/2023 7:15 AM, Andy Kim wrote:
External Email - Use Caution
Dear Dr. Douglas N. Greve,
Thanks to you, I could have a binary disk approximately 3mm in radius by the codes you told me (*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1xywEFLDR_oeRyXfrDIuVJrFffRVWUUzwyhfbDv55ykMN9F... https://secure-web.cisco.com/1z0F3-vP1KDJI6B_AsTyKAaKNmMd0vO7tGkwv_YiAe4mgtFL1QdTiYs_dYZa0SNYmBNh1h2ge_bd6h98_TjHFMZx8lfVf63LrKeca6bpHJqS3efsPrABmWu40PwE_1bXSb2a1Mtv0R2-CjohzV52lOG68h2lN3pBTXfpuar6V01OlX-ZOuMA0aMQl0OxzxU7uGWZRbNeUFiUdR2dqlzLBm98JI_0xPxY7tVbtcYEGfmjJ4NRcdsEjFHhLRp6JVv4h241u3JIeOcZrWmJ69BHaQm7ygPDdDOpDsxQNHVOTHeJVBDigROxNKREccAKsjdVP/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg74761.html):
mri_volsynth --dim-surf fsaverage/surf/lh.white --pdf delta --delta-crsf ${vertexno} 0 0 0 --0 delta.mgh mris_fwhm --i delta.mgh --o delta.sm3.mgh --s fsaverage --hemi lh mri_binarize --i delta.sm3.mgh --min 0.5 --o delta.sm3.bin.mgh
I have sincerely appreciated your help.
Now I'm wondering how to modulate the radius. I guess I can do it by adding --fwhm option to mris_fwhm command, for example: mris_fwhm --i delta.mgh --o delta.sm3.mgh --s fsaverage --hemi lh --fwhm 5 At the end, I will get a binary disk with 5mm in radius. Am I right? And does this mean that --fwhm 3 is default for mris_fwhm? How could you define 3mm?
Kind Regards, Andy (Junghyun) Kim
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1qMxwkSOT_r5DsFOsqN8rO-pIHwMdlPfSLV82DQWvC0ujH4...
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Dear Dr. Douglas N. Greve,
I see. Thanks!
Kind Regards, Andy (Junghyun) Kim ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Saturday, May 20, 2023 7:08 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] How can I increase radius of a binary disk?
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oh, you should have used --fwhm 3 on that first command, and if you want 5mm then use --fwhm 5
On 5/19/2023 7:15 AM, Andy Kim wrote:
External Email - Use Caution
Dear Dr. Douglas N. Greve,
Thanks to you, I could have a binary disk approximately 3mm in radius by the codes you told me (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1wUlJQ4uIaCCKMh9cnv1QSFKTfG1tVIqA2Hu1BVMXjeePss...https://secure-web.cisco.com/1z0F3-vP1KDJI6B_AsTyKAaKNmMd0vO7tGkwv_YiAe4mgtFL1QdTiYs_dYZa0SNYmBNh1h2ge_bd6h98_TjHFMZx8lfVf63LrKeca6bpHJqS3efsPrABmWu40PwE_1bXSb2a1Mtv0R2-CjohzV52lOG68h2lN3pBTXfpuar6V01OlX-ZOuMA0aMQl0OxzxU7uGWZRbNeUFiUdR2dqlzLBm98JI_0xPxY7tVbtcYEGfmjJ4NRcdsEjFHhLRp6JVv4h241u3JIeOcZrWmJ69BHaQm7ygPDdDOpDsxQNHVOTHeJVBDigROxNKREccAKsjdVP/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg74761.html):
mri_volsynth --dim-surf fsaverage/surf/lh.white --pdf delta --delta-crsf ${vertexno} 0 0 0 --0 delta.mgh mris_fwhm --i delta.mgh --o delta.sm3.mgh --s fsaverage --hemi lh mri_binarize --i delta.sm3.mgh --min 0.5 --o delta.sm3.bin.mgh
I have sincerely appreciated your help.
Now I'm wondering how to modulate the radius. I guess I can do it by adding --fwhm option to mris_fwhm command, for example: mris_fwhm --i delta.mgh --o delta.sm3.mgh --s fsaverage --hemi lh --fwhm 5 At the end, I will get a binary disk with 5mm in radius. Am I right? And does this mean that --fwhm 3 is default for mris_fwhm? How could you define 3mm?
Kind Regards, Andy (Junghyun) Kim
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1OCMkZOvG7_ACXVmQOtKjEbQ0XvmN09w66Aw6m5552lzsop...https://secure-web.cisco.com/1qMxwkSOT_r5DsFOsqN8rO-pIHwMdlPfSLV82DQWvC0ujH4rKvtDULA71JCiEjh9oC7gx7kxk1mrLLic0IDmV5Wc12SZ49MW1virCcyOS9Lcg6VcL3NwdLaeQ2ERSfk7wpMfJy4GppxUquS6_4sk7oxnm_G9OHoXJ6JHFcOipSAnJAwOnXzZ5shdFCzLaPs0iUE9Qc6shQwMA0K1WJZBETPE5K9KMdlAZk2H-WPbwrkzPyuc-B-mN_egF81aOv66_iE-Apg1zkT00h9ofT-Q7xQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
freesurfer@nmr.mgh.harvard.edu
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Andy Kim -
Douglas N. Greve