External Email - Use Caution
Dear freesurfer team
I have uninstalled the previous versions of freesurfer on my mac (Sonoma 14.1), and have installed a new version 7.4.1 based on the step by step freesurfer installation info on the website. I have set the freesurfer home directory as follows:
export FREESURFER_HOME=/Applications/freesurfer/7.4.1/
export SUBJECTS_DIR=path/to/my/data
source $FREESURFER_HOME/SetUpFreeSurfer.sh
and the license is in the /Applications/freesurfer/7.4.1. But when I run a freesurfer command I get the following error:
ERROR: FreeSurfer license file /Applications/freesurfer/7.2.0/license.txt not found.
QObject::killTimer: Timers cannot be stopped from another thread
QObject::~QObject: Timers cannot be stopped from another thread
/Applications/freesurfer/7.4.1//bin/freeview: line 2: 2938 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"
Could you help me with this issue?
thanks so much.
Best,
Atena
Hi Atena,
Can you check if you have environment variable FS_LICENSE set?
echo $FS_LICENSE
Set FS_LICENSE to your license file in 7.4.1,
export FS_LICENSE=<path-to-license-file>
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Atena Akbari Sent: Friday, November 17, 2023 6:06 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] license issue with the updated version
External Email - Use Caution Dear freesurfer team
I have uninstalled the previous versions of freesurfer on my mac (Sonoma 14.1), and have installed a new version 7.4.1 based on the step by step freesurfer installation info on the website. I have set the freesurfer home directory as follows:
export FREESURFER_HOME=/Applications/freesurfer/7.4.1/
export SUBJECTS_DIR=path/to/my/data
source $FREESURFER_HOME/SetUpFreeSurfer.sh
and the license is in the /Applications/freesurfer/MailScanner has detected a possible fraud attempt from "7.4.1" claiming to be MailScanner warning: numerical links are often malicious: 7.4.1.http://7.4.1. But when I run a freesurfer command I get the following error:
ERROR: FreeSurfer license file /Applications/freesurfer/7.2.0/license.txt not found.
QObject::killTimer: Timers cannot be stopped from another thread
QObject::~QObject: Timers cannot be stopped from another thread
/Applications/freesurfer/7.4.1//bin/freeview: line 2: 2938 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"
Could you help me with this issue?
thanks so much.
Best,
Atena
External Email - Use Caution
Thanks a lot, Yujing, I updated the FS_LICENSE accordingly, but when I want to load a surface in freeview I get the following error:
QObject::killTimer: Timers cannot be stopped from another thread QObject::~QObject: Timers cannot be stopped from another thread
also, with tkregister2 or tkregisterfv I don't get the GUI, it gives me the "MRIread failed" error. I appreciate your help.
All the best, Atena
On Sat, Nov 18, 2023 at 1:00 PM Huang, Yujing YHUANG43@mgh.harvard.edu wrote:
Hi Atena,
Can you check if you have environment variable FS_LICENSE set?
echo $FS_LICENSE
Set FS_LICENSE to your license file in 7.4.1,
export FS_LICENSE=<path-to-license-file>
Best,
Yujing
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Atena Akbari *Sent:* Friday, November 17, 2023 6:06 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] license issue with the updated version
External Email - Use Caution *Dear freesurfer team
I have uninstalled the previous versions of freesurfer on my mac (Sonoma 14.1), and have installed a new version 7.4.1 based on the step by step freesurfer installation info on the website. I have set the freesurfer home directory as follows:
export FREESURFER_HOME=/Applications/freesurfer/7.4.1/
export SUBJECTS_DIR=path/to/my/data
source $FREESURFER_HOME/SetUpFreeSurfer.sh
and the license is in the /Applications/freesurfer/*MailScanner has detected a possible fraud attempt from "7.4.1" claiming to be* * MailScanner warning: numerical links are often malicious:* 7.4.1. http://7.4.1. But when I run a freesurfer command I get the following error:
ERROR: FreeSurfer license file /Applications/freesurfer/7.2.0/license.txt not found.
QObject::killTimer: Timers cannot be stopped from another thread
QObject::~QObject: Timers cannot be stopped from another thread
/Applications/freesurfer/7.4.1//bin/freeview: line 2: 2938 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"
Could you help me with this issue?
thanks so much.
Best,
Atena _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1zqU3GLsVIY0xt4g_U_sVeUZlGM0AK4LuIi3tMD23u7k9o9... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1FS2W3Ked5KnVBVcy1_V77W_0hRtD5Y3ayHccRVbabdim2U... < https://secure-web.cisco.com/1FS2W3Ked5KnVBVcy1_V77W_0hRtD5Y3ayHccRVbabdim2U... .
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