What I need are the ?h.Yeo.annot files for the individual subjects, similar to the default ?h.aparc.annot and ?h.aparc.2009.annot files. Will mri_label2labe give me that directly?

Thanks, -Jeff

-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Monday, March 10, 2014 9:50 AM To: Jeff Eriksen Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] applying Yeo atlas to individual brains

Hi Jeff

you should be able to use mri_label2label to map the Yeo atlas from fsaverage to any subject.

cheers Bruce On Mon, 10 Mar 2014, Jeff Eriksen wrote:

Our lab has a need to apply the Yeo atlas to individual brains. As I understand it, Yeo atlas is only currently available for the FSAverage brain. Any plans to incorporate Yeo on to the default FS segmentation, or have it available as an option?

-Jeff Eriksen

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

yes, that is the option. If you run it with --help, it will actually give you an example. doug

On 3/10/14 7:23 PM, Thomas Yeo wrote:

Hi Jeff,

I am a little unsure myself since I usually work with data mapped to fsaverage space. I think you might want to use mri_surf2surf, since there's a "--sval-annot" option. It's hard for me to check now because I am away at a conference.

Can someone chime in if mri_surf2surf is wrong?

Thanks, Thomas

On Mon, Mar 10, 2014 at 10:59 AM, Jeff Eriksen eriksenj@ohsu.edu wrote:

...

What I need are the ?h.Yeo.annot files for the individual subjects, similar to the default ?h.aparc.annot and ?h.aparc.2009.annot files. Will mri_label2labe give me that directly?

Thanks, -Jeff

-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Monday, March 10, 2014 9:50 AM To: Jeff Eriksen Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] applying Yeo atlas to individual brains

Hi Jeff

you should be able to use mri_label2label to map the Yeo atlas from fsaverage to any subject.

cheers Bruce On Mon, 10 Mar 2014, Jeff Eriksen wrote:

...

Our lab has a need to apply the Yeo atlas to individual brains. As I understand it, Yeo atlas is only currently available for the FSAverage brain. Any plans to incorporate Yeo on to the default FS segmentation, or have it available as an option?

-Jeff Eriksen

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

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