External Email - Use Caution
Dear Freesurfer experts,
I’m running Freeview on a centos7 computer and having the issue of loading surface data and 1mm volume data. The error message is *Segmentation fault (core dumped).* This issue remains no matter I work locally or remotely. However, 2mm volume data can be visualized successfully in either way.
I've tried running glxgears, which gave me a pop-up window showing 3 interlocking wheels (red/green/blue).
Below is the graphic card information obtained from lspci | grep VGA if helps.
01:00.0 VGA compatible controller: NVIDIA Corporation GP102GL [Quadro P6000] (rev a1)
42:00.0 VGA compatible controller: ASPEED Technology, Inc. ASPEED Graphics Family (rev 41)
Thanks in advance for your help.
Best,
Wen
Would it be possible to send us the volume and the surface files so that we can try to replicate the issue?
Thanks, Ruopeng
On Mar 14, 2022, at 12:01 PM, Wen Wen <wenw2011@gmail.commailto:wenw2011@gmail.com> wrote:
External Email - Use Caution
Dear Freesurfer experts, I’m running Freeview on a centos7 computer and having the issue of loading surface data and 1mm volume data. The error message is Segmentation fault (core dumped). This issue remains no matter I work locally or remotely. However, 2mm volume data can be visualized successfully in either way.
I've tried running glxgears, which gave me a pop-up window showing 3 interlocking wheels (red/green/blue). Below is the graphic card information obtained from lspci | grep VGA if helps. 01:00.0 VGA compatible controller: NVIDIA Corporation GP102GL [Quadro P6000] (rev a1) 42:00.0 VGA compatible controller: ASPEED Technology, Inc. ASPEED Graphics Family (rev 41)
Thanks in advance for your help.
Best, Wen _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Ruopeng, Thank you for your reply. Please see attached. Visualizing problems happen exclusively for the 1mm volume file and surface data. wen
Shen268_1mm_Proportion.nii https://secure-web.cisco.com/1INuC1Gy5DH8hktfH_Yp0EXhs-4BQpXSdN2jZVykM9XT_jmfBQNNgqIfDfTUtdbTlCTEqHTPoxUTrsp5ufh3xOHQzD4D4AbCa49yBmUuA3RkilP9VUg3i8jWcdTbOnWAVXXnbUbKriSEldyTtQW5iT2Wd4vtkZpTGAupU3V5ZLiTGLpya5kBt4eO_cJx3UOmSAwHMWz8gzhr8YlSzqUrfaMwvdrz6wKH2IKHYeORRd6pu5yJ9M8qWAUewQtvMcuGMs9qEbcioPWgT7SiTuJeOqgJk1Y3PrJCZdPU_wgC5qmiDy7M8qa6M-wILVQC32rO6YYI9inTrO3UgBLfQiAe8OB2kBJ3lHsxm4z-B_xxQ9yM/https%3A%2F%2Fdrive.google.com%2Ffile%2Fd%2F1iCIv06uB9Dc8VlJKJYePfmKUVnuEl_Bu%2Fview%3Fusp%3Ddrive_web Shen268_2mm_Proportion.nii https://secure-web.cisco.com/1FXTuIa0daKp78vhjZMbi0w5F3sQTfyxSD0H3xIOKnrAkcJp9wo7FX-kP-1dO8juGUqSEUyWlJyKfT1KVqVTdp8rGLGZ-oqBOYwUft8uTY_EEE-Q0ngzvS1YKL1LtdsoyMUievNftxPvZQU_xKKBZ07BF70pp2HLaVkAh6BjnS9ugR_TuIANp9rj3Y5OqKseImCfVfAjtWMATEgKxO8_iLnB-3fh06c-MY8ChTmIjL6rDv7EwVr3Fb2dVllxfvTv6y1hgUcQC917HOTwb5f2Hz4C1bWK_-GI1_PCR2K7KPoF4TJ3H-RrCiol3jUYjqI5tNCjzmVp0L6WgOluxnQ6VZ_gQ70YaA5MlebHEUQHtizs/https%3A%2F%2Fdrive.google.com%2Ffile%2Fd%2F13lbaAEKguS36kAvX72SK3WjbZPnxSGRT%2Fview%3Fusp%3Ddrive_web
On Mon, Mar 14, 2022 at 1:56 PM Wang, Ruopeng RWANG4@mgh.harvard.edu wrote:
Would it be possible to send us the volume and the surface files so that we can try to replicate the issue?
Thanks, Ruopeng
On Mar 14, 2022, at 12:01 PM, Wen Wen wenw2011@gmail.com wrote:
External Email - Use CautionDear Freesurfer experts,
I’m running Freeview on a centos7 computer and having the issue of loading surface data and 1mm volume data. The error message is *Segmentation fault (core dumped).* This issue remains no matter I work locally or remotely. However, 2mm volume data can be visualized successfully in either way.
I've tried running glxgears, which gave me a pop-up window showing 3 interlocking wheels (red/green/blue).
Below is the graphic card information obtained from lspci | grep VGA if helps.
01:00.0 VGA compatible controller: NVIDIA Corporation GP102GL [Quadro P6000] (rev a1)
42:00.0 VGA compatible controller: ASPEED Technology, Inc. ASPEED Graphics Family (rev 41)
Thanks in advance for your help.
Best,
Wen _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1Y8BUJM5qosiD-yGPogGiiCKNmXfiYb4ihCCFU8knqE28xP...
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1Y8BUJM5qosiD-yGPogGiiCKNmXfiYb4ihCCFU8knqE28xP... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1jv6qCKlFli7ZwxPR_90-schP9jCL5HVbSwa6nL4WeHa1hC... < https://secure-web.cisco.com/1jv6qCKlFli7ZwxPR_90-schP9jCL5HVbSwa6nL4WeHa1hC... . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
I had no problem loading these files. Maybe it’s the surface file? Can you also send the surface file?
On Mar 14, 2022, at 8:20 PM, Wen Wen <wenw2011@gmail.commailto:wenw2011@gmail.com> wrote:
External Email - Use Caution
Hi Ruopeng, Thank you for your reply. Please see attached. Visualizing problems happen exclusively for the 1mm volume file and surface data. wen
[https://secure-web.cisco.com/1EXdkNdS1UJpjIQHepGhXm8n5zPlYSwGsDoueRqNPJU4fIy...] Shen268_1mm_Proportion.niihttps://secure-web.cisco.com/1INuC1Gy5DH8hktfH_Yp0EXhs-4BQpXSdN2jZVykM9XT_jmfBQNNgqIfDfTUtdbTlCTEqHTPoxUTrsp5ufh3xOHQzD4D4AbCa49yBmUuA3RkilP9VUg3i8jWcdTbOnWAVXXnbUbKriSEldyTtQW5iT2Wd4vtkZpTGAupU3V5ZLiTGLpya5kBt4eO_cJx3UOmSAwHMWz8gzhr8YlSzqUrfaMwvdrz6wKH2IKHYeORRd6pu5yJ9M8qWAUewQtvMcuGMs9qEbcioPWgT7SiTuJeOqgJk1Y3PrJCZdPU_wgC5qmiDy7M8qa6M-wILVQC32rO6YYI9inTrO3UgBLfQiAe8OB2kBJ3lHsxm4z-B_xxQ9yM/https%3A%2F%2Fdrive.google.com%2Ffile%2Fd%2F1iCIv06uB9Dc8VlJKJYePfmKUVnuEl_Bu%2Fview%3Fusp%3Ddrive_web[X] [https://secure-web.cisco.com/1EXdkNdS1UJpjIQHepGhXm8n5zPlYSwGsDoueRqNPJU4fIy...] Shen268_2mm_Proportion.niihttps://secure-web.cisco.com/1FXTuIa0daKp78vhjZMbi0w5F3sQTfyxSD0H3xIOKnrAkcJp9wo7FX-kP-1dO8juGUqSEUyWlJyKfT1KVqVTdp8rGLGZ-oqBOYwUft8uTY_EEE-Q0ngzvS1YKL1LtdsoyMUievNftxPvZQU_xKKBZ07BF70pp2HLaVkAh6BjnS9ugR_TuIANp9rj3Y5OqKseImCfVfAjtWMATEgKxO8_iLnB-3fh06c-MY8ChTmIjL6rDv7EwVr3Fb2dVllxfvTv6y1hgUcQC917HOTwb5f2Hz4C1bWK_-GI1_PCR2K7KPoF4TJ3H-RrCiol3jUYjqI5tNCjzmVp0L6WgOluxnQ6VZ_gQ70YaA5MlebHEUQHtizs/https%3A%2F%2Fdrive.google.com%2Ffile%2Fd%2F13lbaAEKguS36kAvX72SK3WjbZPnxSGRT%2Fview%3Fusp%3Ddrive_web[X]
On Mon, Mar 14, 2022 at 1:56 PM Wang, Ruopeng <RWANG4@mgh.harvard.edumailto:RWANG4@mgh.harvard.edu> wrote: Would it be possible to send us the volume and the surface files so that we can try to replicate the issue?
Thanks, Ruopeng
On Mar 14, 2022, at 12:01 PM, Wen Wen <wenw2011@gmail.commailto:wenw2011@gmail.com> wrote:
External Email - Use Caution
Dear Freesurfer experts, I’m running Freeview on a centos7 computer and having the issue of loading surface data and 1mm volume data. The error message is Segmentation fault (core dumped). This issue remains no matter I work locally or remotely. However, 2mm volume data can be visualized successfully in either way.
I've tried running glxgears, which gave me a pop-up window showing 3 interlocking wheels (red/green/blue). Below is the graphic card information obtained from lspci | grep VGA if helps. 01:00.0 VGA compatible controller: NVIDIA Corporation GP102GL [Quadro P6000] (rev a1) 42:00.0 VGA compatible controller: ASPEED Technology, Inc. ASPEED Graphics Family (rev 41)
Thanks in advance for your help.
Best, Wen _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1Y8BUJM5qosiD-yGPogGiiCKNmXfiYb4ihCCFU8knqE28xPmvlvYGHrwSnNOG1A9Huz_rnfqQXy4v-Q-a86bCHxV8WWoRUaw77ia_PJr3IBUIYujt0MOxGAchvm3t1R9JyxA7Ub18Sp5_PTUSykURJlsFJaI2X2O5hCqpufCxQWXK2BIwLTpcVsy4-tKM2GxFzJNRITMfwchVOEWDQb1_4qlOSCfoy3j2ztNtZ20-nujPWBSc1jneC_ihFhJLi3xP_-NqbJoJq3mjvt6V-sN2IxQPLuYwlRH3fawu0PSrGZjbdyo2gJXN-xrD4zt7jb7cLrysQ2t4oIf8aqDX0fJs6kGF3BIABix2hWaAqFe9m9M/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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Wang, Ruopeng -
Wen Wen