thats great, however when I type in the command, the computer is not recognizing it:
[amc@amcpacs mri]$ mri_edit_with_aseg wm aseg wm mri_edit_with_aseg: Command not found.
tried this way also:
[amc@amcpacs mri]$ recon-all -subjid 1768-4 -mri_edit_with_aseg wm aseg wm ERROR: Flag -mri_edit_with_aseg unrecognized.
any ideas why?
dave
David A. Soscia Neurosciences Advanced Imaging Research Center 47 New Scotland Ave. Albany, NY 12208-3479 Building S Rm. 132 P- (518)-262-0826 C- (518)-469-8317 sosciad@mail.amc.edu
Bruce Fischl fischl@nmr.mgh.harvard.edu 08/23/05 1:45 PM >>>
yes, most of that (not fornix or optic nerve)
On Tue, 23 Aug 2005, David Soscia wrote:
Guys,
If you run the auto segmentation editor in the new program, does it do the defect editing (optical nerve, fornix, lateral ventricle, basal ganglia) for you, eliminating the time it takes to do this? If this
is
true, it is a life (and time) saver for me.
Dave
David A. Soscia Neurosciences Advanced Imaging Research Center 47 New Scotland Ave. Albany, NY 12208-3479 Building S Rm. 132 P- (518)-262-0826 C- (518)-469-8317 sosciad@mail.amc.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
is it installed in your freesurfer/bin dir? Is that in your path?
On Tue, 23 Aug 2005, David Soscia wrote:
thats great, however when I type in the command, the computer is not recognizing it:
[amc@amcpacs mri]$ mri_edit_with_aseg wm aseg wm mri_edit_with_aseg: Command not found.
tried this way also:
[amc@amcpacs mri]$ recon-all -subjid 1768-4 -mri_edit_with_aseg wm aseg wm ERROR: Flag -mri_edit_with_aseg unrecognized.
any ideas why?
dave
David A. Soscia Neurosciences Advanced Imaging Research Center 47 New Scotland Ave. Albany, NY 12208-3479 Building S Rm. 132 P- (518)-262-0826 C- (518)-469-8317 sosciad@mail.amc.edu
Bruce Fischl fischl@nmr.mgh.harvard.edu 08/23/05 1:45 PM >>>
yes, most of that (not fornix or optic nerve)
On Tue, 23 Aug 2005, David Soscia wrote:
Guys,
If you run the auto segmentation editor in the new program, does it do the defect editing (optical nerve, fornix, lateral ventricle, basal ganglia) for you, eliminating the time it takes to do this? If this
is
true, it is a life (and time) saver for me.
Dave
David A. Soscia Neurosciences Advanced Imaging Research Center 47 New Scotland Ave. Albany, NY 12208-3479 Building S Rm. 132 P- (518)-262-0826 C- (518)-469-8317 sosciad@mail.amc.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
the flag is -edit_wm_with_aseg, try this, it should work.
Jenni
thats great, however when I type in the command, the computer is not recognizing it:
[amc@amcpacs mri]$ mri_edit_with_aseg wm aseg wm mri_edit_with_aseg: Command not found.
tried this way also:
[amc@amcpacs mri]$ recon-all -subjid 1768-4 -mri_edit_with_aseg wm aseg wm ERROR: Flag -mri_edit_with_aseg unrecognized.
any ideas why?
dave
David A. Soscia Neurosciences Advanced Imaging Research Center 47 New Scotland Ave. Albany, NY 12208-3479 Building S Rm. 132 P- (518)-262-0826 C- (518)-469-8317 sosciad@mail.amc.edu
Bruce Fischl fischl@nmr.mgh.harvard.edu 08/23/05 1:45 PM >>>
yes, most of that (not fornix or optic nerve)
On Tue, 23 Aug 2005, David Soscia wrote:
Guys,
If you run the auto segmentation editor in the new program, does it do the defect editing (optical nerve, fornix, lateral ventricle, basal ganglia) for you, eliminating the time it takes to do this? If this
is
true, it is a life (and time) saver for me.
Dave
David A. Soscia Neurosciences Advanced Imaging Research Center 47 New Scotland Ave. Albany, NY 12208-3479 Building S Rm. 132 P- (518)-262-0826 C- (518)-469-8317 sosciad@mail.amc.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
mri_edit_wm_with_aseg
or
recon-all -edit_wm_with_aseg (if it's in your version of recon-all -> grep for it.)
On Tue, 23 Aug 2005, David Soscia wrote:
thats great, however when I type in the command, the computer is not recognizing it:
[amc@amcpacs mri]$ mri_edit_with_aseg wm aseg wm mri_edit_with_aseg: Command not found.
tried this way also:
[amc@amcpacs mri]$ recon-all -subjid 1768-4 -mri_edit_with_aseg wm aseg wm ERROR: Flag -mri_edit_with_aseg unrecognized.
any ideas why?
dave
David A. Soscia Neurosciences Advanced Imaging Research Center 47 New Scotland Ave. Albany, NY 12208-3479 Building S Rm. 132 P- (518)-262-0826 C- (518)-469-8317 sosciad@mail.amc.edu
Bruce Fischl fischl@nmr.mgh.harvard.edu 08/23/05 1:45 PM >>>
yes, most of that (not fornix or optic nerve)
On Tue, 23 Aug 2005, David Soscia wrote:
Guys,
If you run the auto segmentation editor in the new program, does it do the defect editing (optical nerve, fornix, lateral ventricle, basal ganglia) for you, eliminating the time it takes to do this? If this
is
true, it is a life (and time) saver for me.
Dave
David A. Soscia Neurosciences Advanced Imaging Research Center 47 New Scotland Ave. Albany, NY 12208-3479 Building S Rm. 132 P- (518)-262-0826 C- (518)-469-8317 sosciad@mail.amc.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Brian T. Quinn -
Bruce Fischl -
David Soscia -
jpacheco＠nmr.mgh.harvard.edu