tkmedit will re-align to scanner space. The pixel data are not affected. tkmedit is not used to process any data, only to view it, so it won't affect stats. dougt

Gabor Perlaki wrote:

Dear all,

I've some fsl niftii MPRAGE images converted by MRIConverter. They look fine in fslview and I can open them by freesurfer as well ( tkmedit -f *.nii.gz) , but when I compare the images between fslview and tkmedit they look slightly different. It seems that the orientation is the same in both viewer, but the rotation is slightly different. Why are the images slightly rotated (reoriented) viewing by tkmedit? Is it affect any statistics by freesurfer?

Thanks, Gabor

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer