Hi Freesurfer/HCP experts,
I am curious if there is a way to incorporate HCP data (i.e. myelin maps) into the FreeSurfer processing stream. Matthew Glasser mentioned in a post on the HCP mailing list about a month back that this is being actively worked on by FreeSurfer: http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html. http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html Are there any workflows or development versions that I can download in order to perform something like this.
Respectfully,
-Tim
Timothy Hendrickson Department of Psychiatry University of Minnesota Mobile: 507-259-3434 (texts okay)
To clarify, in that post, Matt wasn’t saying that FS was going to incorporate myelin maps. Rather, the new (v6) version of FS, with its support of data acquired with < 1 mm resolution, may eliminate the need for some of the steps that are currently the HCP Pipelines that are there to take full advantage of higher resolution structural acquisitions.
cheers, -MH
-- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu
From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Timothy Hendrickson <hendr522@umn.edumailto:hendr522@umn.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Tuesday, November 8, 2016 at 9:15 AM To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Longitudinal Stream on HCP Data
Hi Freesurfer/HCP experts,
I am curious if there is a way to incorporate HCP data (i.e. myelin maps) into the FreeSurfer processing stream. Matthew Glasser mentioned in a post on the HCP mailing list about a month back that this is being actively worked on by FreeSurfer: http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html.http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html Are there any workflows or development versions that I can download in order to perform something like this.
Respectfully,
-Tim
Timothy Hendrickson Department of Psychiatry University of Minnesota Mobile: 507-259-3434 (texts okay)
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
yes, thanks Mike, that is true as well. The new V6 works very nicely on data that is higher res than 1mm On Tue, 8 Nov 2016, Harms, Michael wrote:
To clarify, in that post, Matt wasn’t saying that FS was going to incorporate myelin maps. Rather, the new (v6) version of FS, with its support of data acquired with < 1 mm resolution, may eliminate the need for some of the steps that are currently the HCP Pipelines that are there to take full advantage of higher resolution structural acquisitions.
cheers, -MH
-- Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Timothy Hendrickson hendr522@umn.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, November 8, 2016 at 9:15 AM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Longitudinal Stream on HCP Data
Hi Freesurfer/HCP experts,
I am curious if there is a way to incorporate HCP data (i.e. myelin maps) into the FreeSurfer processing stream. Matthew Glasser mentioned in a post on the HCP mailing list about a month back that this is being actively worked on by FreeSurfer: http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html. Are there any workflows or development versions that I can download in order to perform something like this.
Respectfully,
-Tim
Timothy Hendrickson Department of Psychiatry University of Minnesota Mobile: 507-259-3434 (texts okay)
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Hi Tim
for a long time we have had a post-processing routine that uses T2 or FLAIR images for post-hoc surface deformation. This existed long before the HCP, although I did tweak it for the Wash U HCP acquisition to make it perform better. The upcoming v6 has the overall best performance with the T2s I believe
cheers Bruce
On Tue, 8 Nov 2016, Timothy Hendrickson wrote:
Hi Freesurfer/HCP experts,
I am curious if there is a way to incorporate HCP data (i.e. myelin maps) into the FreeSurfer processing stream. Matthew Glasser mentioned in a post on the HCP mailing list about a month back that this is being actively worked on by FreeSurfer: http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html. Are there any workflows or development versions that I can download in order to perform something like this.
Respectfully,
-Tim
Timothy Hendrickson Department of Psychiatry University of Minnesota Mobile: 507-259-3434 (texts okay)
freesurfer@nmr.mgh.harvard.edu