To clarify, in that post, Matt wasn’t saying that FS was going to incorporate myelin maps. Rather, the new (v6) version of FS, with its support of data acquired with < 1 mm resolution, may eliminate the need for some of the steps that are currently the HCP Pipelines that are there to take full advantage of higher resolution structural acquisitions.

cheers, -MH

-- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu

From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Timothy Hendrickson <hendr522@umn.edumailto:hendr522@umn.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Tuesday, November 8, 2016 at 9:15 AM To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Longitudinal Stream on HCP Data

Hi Freesurfer/HCP experts,

I am curious if there is a way to incorporate HCP data (i.e. myelin maps) into the FreeSurfer processing stream. Matthew Glasser mentioned in a post on the HCP mailing list about a month back that this is being actively worked on by FreeSurfer: http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html.http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html Are there any workflows or development versions that I can download in order to perform something like this.

Respectfully,

-Tim

Timothy Hendrickson Department of Psychiatry University of Minnesota Mobile: 507-259-3434 (texts okay)

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Hi Tim

for a long time we have had a post-processing routine that uses T2 or FLAIR images for post-hoc surface deformation. This existed long before the HCP, although I did tweak it for the Wash U HCP acquisition to make it perform better. The upcoming v6 has the overall best performance with the T2s I believe

cheers Bruce

On Tue, 8 Nov 2016, Timothy Hendrickson wrote:

Hi Freesurfer/HCP experts,

I am curious if there is a way to incorporate HCP data (i.e. myelin maps) into the FreeSurfer processing stream. Matthew Glasser mentioned in a post on the HCP mailing list about a month back that this is being actively worked on by FreeSurfer: http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html. Are there any workflows or development versions that I can download in order to perform something like this.

Respectfully,

-Tim

Timothy Hendrickson Department of Psychiatry University of Minnesota Mobile: 507-259-3434 (texts okay)