hi all,
I encountered a strange problem today. I used
recon-all -all
to get surfaces of a subject. I have no problem with his/her left hemisphere. But for the right hemisphere, the numbers of vertexes and faces of pial surface are different from those of the inflated surface. I checked the headers of curavture and convexity maps also. They all tell the same information as the pial surface's header. But not the same as the header of inflated surface. I also checked the file content. The file did not seem like corrupted.
I have never had the problem with other data i have. Only on this hemisphere of the subject.
Has anyone out there experienced the same problem before?
Cheers, Forrest
Hi Forrest
that happens if something fails, or was incompletely rerun. Try running
recon-all -s <subject id> -make all
and see what it does. It should fix your problem
cheers Bruce
On Sun, 3 Apr 2011, Forrest Sheng Bao wrote:
hi all,
I encountered a strange problem today. I used
recon-all -all
to get surfaces of a subject. I have no problem with his/her left hemisphere. But for the right hemisphere, the numbers of vertexes and faces of pial surface are different from those of the inflated surface. I checked the headers of curavture and convexity maps also. They all tell the same information as the pial surface's header. But not the same as the header of inflated surface. I also checked the file content. The file did not seem like corrupted.
I have never had the problem with other data i have. Only on this hemisphere of the subject.
Has anyone out there experienced the same problem before?
Cheers, Forrest
Hi Forrest,
You can probably try running
recon-all -make all -s <subjID>
and see if that fixes the problem.
Sita.
On Sun, 3 Apr 2011, Forrest Sheng Bao wrote:
hi all,
I encountered a strange problem today. I used
recon-all -all
to get surfaces of a subject. I have no problem with his/her left hemisphere. But for the right hemisphere, the numbers of vertexes and faces of pial surface are different from those of the inflated surface. I checked the headers of curavture and convexity maps also. They all tell the same information as the pial surface's header. But not the same as the header of inflated surface. I also checked the file content. The file did not seem like corrupted.
I have never had the problem with other data i have. Only on this hemisphere of the subject.
Has anyone out there experienced the same problem before?
Cheers, Forrest
freesurfer@nmr.mgh.harvard.edu